Guide to the Human Genome
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Name: GLT25D1 Sequence: fasta or formatted (622aa) NCBI GI: 31377697
Description:

glycosyltransferase 25 domain containing 1

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         58           3
 C cysteine            1.0          6           1
 D aspartate           6.3         39           2
 E glutamate           7.1         44           2
 F phenylalanine       3.7         23           2
 G glycine             3.7         23           1
 H histidine           3.1         19           1
 I isoleucine          2.9         18           2
 K lysine              4.5         28           1
 L leucine            11.1         69           6
 M methionine          3.4         21           1
 N asparagine          2.9         18           2
 P proline             7.1         44           2
 Q glutamine           3.2         20           2
 R arginine            8.5         53           3
 S serine              5.9         37           1
 T threonine           3.7         23           2
 V valine              6.8         42           2
 W tryptophan          2.1         13           1
 Y tyrosine            3.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycosyltransferase 25 domain containing 1 
GLT25D2               0.655   glycosyltransferase 25 domain containing 2 
CERCAM                0.511   cerebral endothelial cell adhesion molecule 1 [Homo...
PLOD2                 0.038   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD1                 0.036   lysyl hydroxylase 1 precursor 
PLOD3                 0.035   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...
PLOD2                 0.034   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
ARID3A                0.006   AT rich interactive domain 3A (BRIGHT- like) protein ...
RARRES1               0.006   retinoic acid receptor responder (tazarotene induced...
RARRES1               0.006   retinoic acid receptor responder (tazarotene induced...
LOC147645             0.006   PREDICTED: hypothetical protein 
LOC147645             0.006   PREDICTED: hypothetical protein 
LOC147645             0.006   PREDICTED: hypothetical protein 
UCN                   0.006   urocortin preproprotein 
IGSF9                 0.005   immunoglobulin superfamily, member 9 isoform a [Hom...
MRGPRE                0.005   MAS-related GPR, member E 
SYMPK                 0.004   symplekin 
TRPM5                 0.004   transient receptor potential cation channel, subfami...
ATAD3B                0.004   AAA-ATPase  TOB3 
MTDH                  0.004   metadherin 
LGALS3BP              0.004   galectin 3 binding protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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