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Search of human proteins with 46255017
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46255017 hypothetical protein LOC84985 isoform b [Homo
sapiens]
(367 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens] 736 0.0
gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens] 689 0.0
gi|30425394 hypothetical protein LOC128876 [Homo sapiens] 240 2e-63
gi|157311635 FAM83H [Homo sapiens] 166 4e-41
gi|156564372 hypothetical protein LOC113828 [Homo sapiens] 161 8e-40
gi|61676089 hypothetical protein LOC222584 [Homo sapiens] 158 6e-39
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 158 8e-39
gi|115392150 hypothetical protein LOC644815 [Homo sapiens] 157 1e-38
gi|153251792 hypothetical protein LOC54854 [Homo sapiens] 142 5e-34
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 34 0.18
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 32 0.69
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 32 0.90
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 32 0.90
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 32 0.90
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 32 0.90
gi|203098098 shroom family member 3 protein [Homo sapiens] 32 1.2
gi|30520348 phospholipase D6 [Homo sapiens] 32 1.2
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 31 1.5
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 31 1.5
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 31 1.5
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 31 1.5
gi|120953251 neuron navigator 3 [Homo sapiens] 31 1.5
gi|13994287 BTE-binding protein 4 [Homo sapiens] 31 2.0
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 30 2.6
gi|148612825 Rap GTPase interactor [Homo sapiens] 30 3.4
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 30 3.4
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 30 3.4
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 30 3.4
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 30 3.4
>gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens]
Length = 367
Score = 736 bits (1899), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV
Sbjct: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
Query: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS
Sbjct: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
Query: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE
Sbjct: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
Query: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI
Sbjct: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
Query: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK
Sbjct: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
Query: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQNKTKTKKQTT 360
SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQNKTKTKKQTT
Sbjct: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQNKTKTKKQTT 360
Query: 361 LWFLMAF 367
LWFLMAF
Sbjct: 361 LWFLMAF 367
>gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]
Length = 434
Score = 689 bits (1778), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV
Sbjct: 1 MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEV 60
Query: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS
Sbjct: 61 DFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHS 120
Query: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE
Sbjct: 121 WASAEKPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILE 180
Query: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI
Sbjct: 181 AANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQI 240
Query: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK
Sbjct: 241 REKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLK 300
Query: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP 344
SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP
Sbjct: 301 SPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHP 344
>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
Length = 747
Score = 240 bits (612), Expect = 2e-63
Identities = 138/346 (39%), Positives = 204/346 (58%), Gaps = 14/346 (4%)
Query: 8 GKIRKRLEDVKSQWVRPARA-DFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSV 66
G +R R+E++K W R + +E+ARLA DALL+ G AY RV+S+E E+ FLS++
Sbjct: 17 GPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEERELPFLSAL 76
Query: 67 EAQYIQAQAREPPCPPDTLGGAEAGPKGLDS-SSLQSGTYFPVASEGSEPALLHSWASAE 125
+ Y+ + R P + G +GP L S + SGTYFP+AS+ P L W
Sbjct: 77 DVDYMTSHVRGGPELSEAQGQEASGPDRLSLLSEVTSGTYFPMASDIDPPDLDLGWPEVP 136
Query: 126 KPYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKR 185
+ + A V+FQ K NI+DL+R ++ V+ ++MD+FTD+E+ CD++EA+++R
Sbjct: 137 QATGFSPTQAVVHFQRDKAKNIKDLLRFLFSQAHTVVAVVMDIFTDMELLCDLMEASSRR 196
Query: 186 GVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFI 245
GV V +LL Q ++ F EMC K+ ++ HL N+ +RS G+ YC+K+GR+F GQ EKF+
Sbjct: 197 GVPVYLLLAQEHLRHFLEMCYKMDLNGEHLPNMRVRSTCGDTYCSKAGRRFTGQALEKFV 256
Query: 246 ISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGL------ 299
+ D V++GSYSFTWLC H +++ + G+ VE FD EFR LYA S+PV G
Sbjct: 257 LIDCEQVVAGSYSFTWLCSQAHTSMVLQLRGRIVEDFDREFRCLYAESQPVEGFCGGEDP 316
Query: 300 KSPRLVAPVPPGAAPANGRLSSSSGSASDRTS-----SNPFSGRSA 340
SPR + P PP A + S + S TS +P GRS+
Sbjct: 317 LSPRALRP-PPVALAFRPDVPSPTSSLPSSTSLSSIKQSPLMGRSS 361
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 166 bits (419), Expect = 4e-41
Identities = 99/267 (37%), Positives = 150/267 (56%), Gaps = 9/267 (3%)
Query: 33 ESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAGP 92
E RLA DAL +GGSEAY R L+ EG DFL E +++ R P
Sbjct: 26 EYYRLAVDALAEGGSEAYSRFLATEGAPDFLCPEELEHVSRHLRPPQYVTREPPEGSLLD 85
Query: 93 KGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHNN--IRDL 150
+D SS GTY+PV S+ + P L W + + + T Q ++ I+D
Sbjct: 86 VDMDGSS---GTYWPVNSDQAVPELDLGWPLT---FGFQGTEVTTLVQPPPPDSPSIKDE 139
Query: 151 VRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQI 210
RR I QV+ ++MD+FTDV++ ++LEAA +R V V +LLD+ + F +M DK ++
Sbjct: 140 ARRMIRSAQQVVAVVMDMFTDVDLLSEVLEAAARR-VPVYILLDEMNAQHFLDMADKCRV 198
Query: 211 SDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNI 270
+ H+ + +R+V G Y ++G+ F G ++EKF++ D V+SGSYSF W +HR++
Sbjct: 199 NLHHVDFLRVRTVAGPTYYCRTGKSFKGHVKEKFLLVDCAVVMSGSYSFMWSFEKIHRSL 258
Query: 271 LSKFTGQAVELFDEEFRHLYASSKPVM 297
F G+ V FDEEFR L+A S+P++
Sbjct: 259 AHVFQGELVSSFDEEFRILFAQSEPLV 285
>gi|156564372 hypothetical protein LOC113828 [Homo sapiens]
Length = 500
Score = 161 bits (408), Expect = 8e-40
Identities = 108/284 (38%), Positives = 157/284 (55%), Gaps = 12/284 (4%)
Query: 22 VRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQA--QAREPP 79
V A+A F E R A +ALL GG +AY L +E DFLSS E Q ++A E
Sbjct: 18 VTEAQAAFYYCERRRAALEALLGGGEQAYRERLKEEQLRDFLSSPERQALRAAWSPYEDA 77
Query: 80 CPP-DTLGGAEAGPKGLDSSSLQSG---TYFPVASEGSEPALLHSWASAEKPYLKEKSSA 135
P + G ++A K + +SG Y+P S+ P L W + + + S
Sbjct: 78 VPAANARGKSKAKAKAPAPAPAESGESLAYWPDRSDTEVPPLDLGWT--DTGFYRGVSRV 135
Query: 136 TVYFQTVKHN---NIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVL 192
T++ K +++ +VR+ I + +V+ ++MD+FTD +IF DI++AA KR V V ++
Sbjct: 136 TLFTHPPKDEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYII 195
Query: 193 LDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFV 252
LD+ GVK F EMC +Q++D ++NI +RSV G + GR G + +F++ D V
Sbjct: 196 LDEAGVKYFLEMCQDLQLTDFRIRNIRVRSVTGVGFYMPMGR-IKGTLSSRFLMVDGDKV 254
Query: 253 LSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPV 296
+GSY FTW HV RN+L TGQ VE FD EFR LYA S+ V
Sbjct: 255 ATGSYRFTWSSSHVDRNLLLLLTGQNVEPFDTEFRELYAISEEV 298
>gi|61676089 hypothetical protein LOC222584 [Homo sapiens]
Length = 1011
Score = 158 bits (400), Expect = 6e-39
Identities = 108/322 (33%), Positives = 159/322 (49%), Gaps = 24/322 (7%)
Query: 36 RLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGL 95
R+A D L++ G EAY L QE DFL+ E YI ++ A++ G
Sbjct: 29 RVAIDILIEHGLEAYQEFLVQERVSDFLAEEEINYILKNVQKV---------AQSTAHGT 79
Query: 96 DSS---SLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHN------N 146
D S +L SGTY+PV S+ P L W PY+ + + H
Sbjct: 80 DDSCDDTLSSGTYWPVESDVEAPNLDLGW-----PYVMPGLLGGTHIDLLFHPPRAHLLT 134
Query: 147 IRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCD 206
I++ +R+ I +V+ ++MD+FTDV+IF +I+EA+ RGV V +LLD+ F M +
Sbjct: 135 IKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEAST-RGVSVYILLDESNFNHFLNMTE 193
Query: 207 KVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHV 266
K S L+NI +R+V+G+ Y +K+G KF G++ +KF++ D + V+ GSYS+ W
Sbjct: 194 KQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKA 253
Query: 267 HRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSA 326
H +++ TGQ VE FDEEFR LYA S A NG S S
Sbjct: 254 HLSMVQIITGQLVESFDEEFRTLYARSCVPSSFAQEESARVKHGKALWENGTYQHSVSSL 313
Query: 327 SDRTSSNPFSGRSAGSHPVPES 348
+ +S GR H + S
Sbjct: 314 ASVSSQRNLFGRQDKIHKLDSS 335
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 158 bits (399), Expect = 8e-39
Identities = 100/280 (35%), Positives = 149/280 (53%), Gaps = 10/280 (3%)
Query: 32 NESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDTLGGAEAG 91
+ES RLA + L+ GG EA+ L +E FL+ E I +A E P A A
Sbjct: 59 SESRRLALEELVAGGPEAFAAFLRRERLARFLNPDEVHAI-LRAAERPGEEGAAAAAAAE 117
Query: 92 PKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKHNN----- 146
S SGTYFP S+ P L W + + + + +FQ
Sbjct: 118 DSFGSSHDCSSGTYFPEQSDLEPPLLELGWPAFYQGAYRGATRVETHFQPRGAGEGGPYG 177
Query: 147 IRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCD 206
+D +R+ + +V+ ++MDVFTD++IF D+ E K+GV V +LLDQ + F +MC
Sbjct: 178 CKDALRQQLRSAREVIAVVMDVFTDIDIFRDLQEICRKQGVAVYILLDQALLSQFLDMCM 237
Query: 207 KVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHV 266
+++ K +++R++ G IY A+SG K G++ EKF + D V +GSYSFTW G +
Sbjct: 238 DLKVHPEQEKLMTVRTITGNIYYARSGTKIIGKVHEKFTLIDGIRVATGSYSFTWTDGKL 297
Query: 267 HRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSPRLVA 306
+ + L +GQ VE FD EFR LYA SKP+ SP+L++
Sbjct: 298 NSSNLVILSGQVVEHFDLEFRILYAQSKPI----SPKLLS 333
>gi|115392150 hypothetical protein LOC644815 [Homo sapiens]
Length = 823
Score = 157 bits (398), Expect = 1e-38
Identities = 106/317 (33%), Positives = 165/317 (52%), Gaps = 23/317 (7%)
Query: 14 LEDVKSQW-VRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYI- 71
L+D W ++ +F +E RLA +AL+ G +A++ VL +E DFLS +E + I
Sbjct: 9 LDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELKRIL 68
Query: 72 -----------QAQAREPPCPPDTLG---GAEA-GPKG--LDSSSLQSGTYFPVASEGSE 114
+ P P+ G G EA G G +++ L S Y+P S+ S
Sbjct: 69 ETIEVYDPGSEDPRGTGPSQGPEDNGVGDGEEASGADGVPIEAEPLPSLEYWPQKSDRSI 128
Query: 115 PALLHSWASAEKPYLKEKSSATVYFQTVKHN--NIRDLVRRCITRTSQVLVILMDVFTDV 172
P L W + + A+VY Q +I+++VR+ I++ +V+ ++MD+FTDV
Sbjct: 129 PQLDLGWPDTIA--YRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVIAVVMDMFTDV 186
Query: 173 EIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKS 232
+IF D+L+A KR V V +++D+ VK F MC++ + HLKN+ +RS G + +S
Sbjct: 187 DIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERACMHLGHLKNLRVRSSGGTEFFTRS 246
Query: 233 GRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYAS 292
KF G + +KF+ D + GSYSFTW RN++S +GQ VE+FD +F+ LY
Sbjct: 247 ATKFKGALAQKFMFVDGDRAVCGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLM 306
Query: 293 SKPVMGLKSPRLVAPVP 309
S V P P P
Sbjct: 307 SHSVSLKGIPMEKEPEP 323
>gi|153251792 hypothetical protein LOC54854 [Homo sapiens]
Length = 478
Score = 142 bits (358), Expect = 5e-34
Identities = 100/326 (30%), Positives = 163/326 (50%), Gaps = 7/326 (2%)
Query: 25 ARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCPPDT 84
A F +E RLA +ALL G+EA+ + +E FLS+ E Q + A A +
Sbjct: 21 ASPGFLYSEGQRLALEALLSKGAEAFQTCVQREELWPFLSADEVQGLAAAAEDWTVAKQE 80
Query: 85 LGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQTVKH 144
G G D + S +Y+P SE P L W K + A +Y Q
Sbjct: 81 PSGMAEGATTTDVDA-GSLSYWPGQSEQPAPVLRLGWPVDSA--WKGITRAQLYTQPPGE 137
Query: 145 NN--IRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQ 202
+++LVR I +++ ++MDVFTD ++ D+++AA +R V V +LLD+ + F
Sbjct: 138 GQPPLKELVRLEIQAAHKLVAVVMDVFTDPDLLLDLVDAATRRWVPVYLLLDRQQLPAFL 197
Query: 203 EMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWL 262
E+ ++ ++ + +N+ +R V G + ++ R+ +G +REKF++ D V+SGSYSFTW
Sbjct: 198 ELAQQLGVNPWNTENVDVRVVRGCSFQSRWRRQVSGTVREKFVLLDGERVISGSYSFTWS 257
Query: 263 CGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGL--KSPRLVAPVPPGAAPANGRLS 320
+HR +++ TG+ V+ F EFR LYA+S P+ + P ++ + G +P
Sbjct: 258 DARLHRGLVTLLTGEIVDAFSLEFRTLYAASCPLPPAPPQKPSVIGGLQRGRSPHRVSRR 317
Query: 321 SSSGSASDRTSSNPFSGRSAGSHPVP 346
S AS P + R A P
Sbjct: 318 RSVAPASPPPPDGPLAHRLAACRVSP 343
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 34.3 bits (77), Expect = 0.18
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 282 FDEEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSG 337
FDE F H + + P + KSP PVP + P++G SSSS S++ +S P G
Sbjct: 269 FDEFFHHPFLDASPSVR-KSP----PVPVPSYPSSGSGSSSSSSSTSHLASPPSLG 319
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 32.3 bits (72), Expect = 0.69
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 295 PVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPES 348
P LK P L+ PP A+ A+ +S S S + +P S RSA P P S
Sbjct: 66 PAASLKPPALL---PPSASRASLDSQTSPDSPSSTPTPSPVSRRSASPEPAPRS 116
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 32.0 bits (71), Expect = 0.90
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 299 LKSPRLVAPVPPGAAP--ANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQNKTKTK 356
+K+ P P AAP ANG+ +SSS S+S +SS+ A + P KT K
Sbjct: 192 VKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATP------KKTVPK 245
Query: 357 KQ 358
KQ
Sbjct: 246 KQ 247
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 32.0 bits (71), Expect = 0.90
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 301 SPRLVAPVPP---GAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVP 346
SP + PV P A+P LSSSS S+S SS+ FS S+ S P P
Sbjct: 829 SPSPIPPVEPLMSAASPGPPTLSSSSSSSS---SSSSFSSSSSSSSPSP 874
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 32.0 bits (71), Expect = 0.90
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 301 SPRLVAPVPP---GAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVP 346
SP + PV P A+P LSSSS S+S SS+ FS S+ S P P
Sbjct: 1030 SPSPIPPVEPLMSAASPGPPTLSSSSSSSS---SSSSFSSSSSSSSPSP 1075
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 32.0 bits (71), Expect = 0.90
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 301 SPRLVAPVPP---GAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVP 346
SP + PV P A+P LSSSS S+S SS+ FS S+ S P P
Sbjct: 1030 SPSPIPPVEPLMSAASPGPPTLSSSSSSSS---SSSSFSSSSSSSSPSP 1075
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 62 FLSSVEAQYIQAQAREPPCPPDTLGGAEAGP--KGLDSSSLQSGTYFPVASEGSEPALLH 119
F S A YIQ + + P E GP + S+ LQ G P A EGS A
Sbjct: 1081 FQQSALADYIQRKTGKRPTSAAGCSLQEPGPLRERAQSAYLQPG---PAALEGSGLASAS 1137
Query: 120 SWASAEKPYLKEKSSATVYFQTV 142
S +S +P L+ + AT+ TV
Sbjct: 1138 SLSSLREPSLQPRREATLLPATV 1160
>gi|30520348 phospholipase D6 [Homo sapiens]
Length = 252
Score = 31.6 bits (70), Expect = 1.2
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 238 GQIREKFIISDWRFVLSGSYSFTWLCGHVHR-NILSKFTGQAVELFDEEFRHLYASSKPV 296
G + KF I D R +++GS ++T +R N+L + V LF EEF ++ P
Sbjct: 153 GYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFNPT 212
Query: 297 MGLKSP--RLVAPVPPGAAPANGRLSS 321
P + P + A GRL S
Sbjct: 213 KYTFFPPKKSHGSCAPPVSRAGGRLLS 239
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 299 LKSPRLVAPVPPGAAP--ANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPE 347
L P LVA PG AP A S+S+G+ + T++ P G A P P+
Sbjct: 543 LMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQ 593
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 299 LKSPRLVAPVPPGAAP--ANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPE 347
L P LVA PG AP A S+S+G+ + T++ P G A P P+
Sbjct: 543 LMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQ 593
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 299 LKSPRLVAPVPPGAAP--ANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPE 347
L P LVA PG AP A S+S+G+ + T++ P G A P P+
Sbjct: 543 LMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQ 593
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 299 LKSPRLVAPVPPGAAP--ANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPE 347
L P LVA PG AP A S+S+G+ + T++ P G A P P+
Sbjct: 549 LMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQ 599
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 81 PPDTLGGAEA-GPKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPY----LKEKSSA 135
PP+ G E KG SSS +G P ++ G PA SA KP+ + K SA
Sbjct: 284 PPNYANGNEKDSSKGPQSSSGVNGNVQPPSTAGQPPASAIPSPSASKPWRSKSMNVKHSA 343
Query: 136 TVYFQTVKHNN 146
T TVK ++
Sbjct: 344 TSTMLTVKQSS 354
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 310 PGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQNK 352
PGAAP +SSS +AS +P SGR+ G+ P +K ++
Sbjct: 91 PGAAPGGASPASSSSAAS-----SPSSGRAPGAAPSAAAKSHR 128
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 302 PRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQ 350
P + P P G+ PA ++S + + R +GRSAG PE+ Q
Sbjct: 125 PWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQ 173
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 30.4 bits (67), Expect = 2.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 306 APVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPVPESKQNKTKTKKQTTL 361
A VPPG G SSSGS+ S SG S+ S S + K+K+Q L
Sbjct: 193 ASVPPGGLGGGGGGGSSSGSSGGGGGSGSGSGGSSSS-----SSSSSKKSKEQKAL 243
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 75 AREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEP 115
A+ PP + GG++AGP DSS L + P+ E +P
Sbjct: 877 AQAPPGRQPSRGGSQAGPPHTDSSCLLTPPSTPLGPEPGDP 917
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 30.0 bits (66), Expect = 3.4
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 280 ELFDEEFRHLYASSKPVMGL--KSPRLVAPVPPGAAPANG--RLSSSSGSASDRTSSNPF 335
EL E+ + L + V G S + PG+AP+ G RLSSSS S S +SS+
Sbjct: 659 ELAQEKKKELEKRLQDVSGQLSSSKKPARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGS 718
Query: 336 SGRSAGS 342
S S+ S
Sbjct: 719 SSDSSDS 725
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 3.4
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 287 RHLYASSKP----VMGLKSPRLVAPVPPGAAP------ANGRLSSSSGSASDRTSSNPFS 336
R + A+S P + +P + P GAAP A SSSS S+S +SS S
Sbjct: 45 RSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSS 104
Query: 337 GRSAGSHPVPES 348
S+ S P P S
Sbjct: 105 SSSSSSSPPPAS 116
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 3.4
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 287 RHLYASSKP----VMGLKSPRLVAPVPPGAAP------ANGRLSSSSGSASDRTSSNPFS 336
R + A+S P + +P + P GAAP A SSSS S+S +SS S
Sbjct: 45 RSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSS 104
Query: 337 GRSAGSHPVPES 348
S+ S P P S
Sbjct: 105 SSSSSSSPPPAS 116
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 284 EEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSH 343
+ +R Y+ + +SP+ +P P + ++ R S S S R SS S RS+ +H
Sbjct: 112 QNYRQAYSPRRGRSRSRSPKRRSPSP--RSRSHSRNSDKSSSDRSRRSS---SSRSSSNH 166
Query: 344 PVPESKQNKTKTKKQTT 360
ES + K+ +K+++
Sbjct: 167 SRVESSKRKSAKEKKSS 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,223,961
Number of Sequences: 37866
Number of extensions: 651824
Number of successful extensions: 3681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 3582
Number of HSP's gapped (non-prelim): 107
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.