Guide to the Human Genome
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Name: FAM83E Sequence: fasta or formatted (478aa) NCBI GI: 153251792
Description:

hypothetical protein LOC54854

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         50           4
 C cysteine            0.8          4           1
 D aspartate           5.2         25           1
 E glutamate           4.8         23           2
 F phenylalanine       2.5         12           1
 G glycine             9.2         44           3
 H histidine           1.0          5           1
 I isoleucine          1.3          6           1
 K lysine              2.5         12           2
 L leucine            11.3         54           3
 M methionine          1.0          5           1
 N asparagine          0.8          4           1
 P proline            10.3         49           4
 Q glutamine           5.2         25           2
 R arginine            9.2         44           3
 S serine              8.6         41           2
 T threonine           4.2         20           3
 V valine              7.1         34           2
 W tryptophan          2.9         14           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54854 
FAM83G                0.197   hypothetical protein LOC644815 
FAM83F                0.196   hypothetical protein LOC113828 
FAM83D                0.185   hypothetical protein LOC81610 
FAM83H                0.168   FAM83H 
FAM83C                0.154   hypothetical protein LOC128876 
FAM83B                0.150   hypothetical protein LOC222584 
FAM83A                0.126   hypothetical protein LOC84985 isoform a 
FAM83A                0.123   hypothetical protein LOC84985 isoform b 
LOC100292845          0.023   PREDICTED: hypothetical protein 
LOC100289230          0.023   PREDICTED: hypothetical protein XP_002342600 
LOC100293375          0.019   PREDICTED: hypothetical protein 
FLJ36031              0.018   hypothetical protein LOC168455 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
DMWD                  0.018   dystrophia myotonica-containing WD repeat motif prot...
SAMD1                 0.018   sterile alpha motif domain containing 1 
ESX1                  0.017   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
HCN4                  0.016   hyperpolarization activated cyclic nucleotide-gated p...
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
SETD1A                0.016   SET domain containing 1A 
MYO15A                0.015   myosin XV 
LOC100288243          0.015   PREDICTED: hypothetical protein 
LOC100288243          0.015   PREDICTED: hypothetical protein XP_002342233 
FMNL2                 0.015   formin-like 2 
SCRIB                 0.014   scribble isoform b 
SCRIB                 0.014   scribble isoform a 
LOC100130360          0.013   PREDICTED: hypothetical protein 
ZFHX4                 0.013   zinc finger homeodomain 4 
CAMK2B                0.013   calcium/calmodulin-dependent protein kinase II beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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