Guide to the Human Genome
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Name: PLD6 Sequence: fasta or formatted (252aa) NCBI GI: 30520348
Description:

phospholipase D6

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         25           5
 C cysteine            2.8          7           1
 D aspartate           3.2          8           2
 E glutamate           6.0         15           2
 F phenylalanine       4.0         10           2
 G glycine             6.7         17           2
 H histidine           3.2          8           2
 I isoleucine          2.8          7           1
 K lysine              2.4          6           2
 L leucine            13.1         33           2
 M methionine          1.2          3           1
 N asparagine          2.4          6           2
 P proline             6.0         15           2
 Q glutamine           4.8         12           1
 R arginine            9.9         25           4
 S serine              6.7         17           2
 T threonine           5.2         13           2
 V valine              6.0         15           2
 W tryptophan          2.4          6           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase D6 
SNX26                 0.029   sorting nexin 26 
PLD4                  0.022   phospholipase D4 
PLD3                  0.016   phospholipase D3 
PLD3                  0.016   phospholipase D3 
SLIT3                 0.014   slit homolog 3 
FAM83A                0.014   hypothetical protein LOC84985 isoform b 
FAM83A                0.014   hypothetical protein LOC84985 isoform a 
FAM83H                0.012   FAM83H 
KDM4B                 0.010   jumonji domain containing 2B 
FAM83D                0.010   hypothetical protein LOC81610 
SCN2B                 0.010   sodium channel, voltage-gated, type II, beta 
LAMA1                 0.010   laminin, alpha 1 precursor 
FLT3                  0.010   fms-related tyrosine kinase 3 
FLT3LG                0.008   fms-related tyrosine kinase 3 ligand 
PARG                  0.008   poly (ADP-ribose) glycohydrolase 
PROM1                 0.006   prominin 1 isoform 2 
PROM1                 0.006   prominin 1 isoform 4 
PROM1                 0.006   prominin 1 isoform 5 
PROM1                 0.006   prominin 1 isoform 6 
PROM1                 0.006   prominin 1 isoform 7 
PROM1                 0.006   prominin 1 isoform 2 
PROM1                 0.006   prominin 1 isoform 1 
UBE3A                 0.006   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.006   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.006   ubiquitin protein ligase E3A isoform 2 
LOC389857             0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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