Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PPP1CB Sequence: fasta or formatted (327aa) NCBI GI: 46249376
Description:

protein phosphatase 1, catalytic subunit, beta isoform 1

Referenced in:

Myosin
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt mRNA [327aa] protein phosphatase 1, catalytic subunit, beta isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         15           2
 C cysteine            4.3         14           2
 D aspartate           7.0         23           1
 E glutamate           6.4         21           1
 F phenylalanine       5.8         19           2
 G glycine             8.0         26           2
 H histidine           1.5          5           1
 I isoleucine          5.8         19           1
 K lysine              5.8         19           2
 L leucine            11.3         37           3
 M methionine          2.1          7           2
 N asparagine          4.0         13           1
 P proline             5.5         18           2
 Q glutamine           3.4         11           1
 R arginine            6.4         21           2
 S serine              4.6         15           1
 T threonine           4.0         13           1
 V valine              4.9         16           2
 W tryptophan          0.9          3           1
 Y tyrosine            3.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, catalytic subunit, beta isofo... 
PPP1CB                1.000   protein phosphatase 1, catalytic subunit, beta isofor...
PPP1CA                0.881   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CA                0.868   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CC                0.862   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CA                0.742   protein phosphatase 1, catalytic subunit, alpha isof...
PPP2CB                0.403   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.403   protein phosphatase 2, catalytic subunit, beta isofor...
PPP4C                 0.400   protein phosphatase 4, catalytic subunit 
PPP2CA                0.398   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP6C                 0.354   protein phosphatase 6, catalytic subunit isoform b [H...
PPP6C                 0.351   protein phosphatase 6, catalytic subunit isoform a ...
PPP6C                 0.302   protein phosphatase 6, catalytic subunit isoform c ...
PPP3CA                0.298   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.298   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CA                0.296   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CC                0.290   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP3CB                0.290   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.290   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.290   protein phosphatase 3, catalytic subunit, beta isofo...
PPP5C                 0.277   protein phosphatase 5, catalytic subunit 
PPEF1                 0.184   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.167   protein phosphatase with EF hand calcium-binding dom...
LOC100128362          0.143   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.141   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.141   PREDICTED: similar to protein phosphatase 2, cataly...
PPEF2                 0.140   serine/threonine protein phosphatase with EF-hand mo...
PPEF1                 0.117   protein phosphatase with EF hand calcium-binding dom...
ZNF317                0.008   zinc finger protein 317 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press