Guide to the Human Genome
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Name: LOC100128362 Sequence: fasta or formatted (254aa) NCBI GI: 239741140
Description:

PREDICTED: similar to protein phosphatase 2, catalytic subunit, alpha

Not currently referenced in the text

Other entries for this name:
alt mRNA {254aa} PREDICTED: similar to protein phosphatase 2, catalytic subunit, a...
alt prot {384aa} PREDICTED: similar to protein phosphatase 2, catalytic subunit, a...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         16           3
 C cysteine            3.9         10           1
 D aspartate           4.7         12           2
 E glutamate           4.7         12           2
 F phenylalanine       1.6          4           1
 G glycine             8.7         22           2
 H histidine           5.9         15           2
 I isoleucine          3.9         10           1
 K lysine              3.9         10           1
 L leucine            11.0         28           3
 M methionine          1.6          4           1
 N asparagine          3.5          9           1
 P proline             6.3         16           2
 Q glutamine           3.5          9           1
 R arginine            5.5         14           2
 S serine              8.7         22           3
 T threonine           4.3         11           1
 V valine              6.7         17           2
 W tryptophan          1.6          4           1
 Y tyrosine            3.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein phosphatase 2, cataly... 
LOC100128362          1.000   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.963   PREDICTED: similar to protein phosphatase 2, cataly...
PPP2CA                0.486   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP2CB                0.480   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.480   protein phosphatase 2, catalytic subunit, beta isofor...
PPP4C                 0.352   protein phosphatase 4, catalytic subunit 
PPP6C                 0.330   protein phosphatase 6, catalytic subunit isoform c ...
PPP6C                 0.305   protein phosphatase 6, catalytic subunit isoform b [H...
PPP6C                 0.305   protein phosphatase 6, catalytic subunit isoform a ...
PPP1CA                0.189   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CC                0.188   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CA                0.188   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CB                0.182   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.182   protein phosphatase 1, catalytic subunit, beta isofor...
PPP1CA                0.162   protein phosphatase 1, catalytic subunit, alpha isof...
PPP3CA                0.160   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.160   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.160   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CB                0.150   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.150   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.150   protein phosphatase 3, catalytic subunit, beta isofo...
PPP3CC                0.143   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP5C                 0.119   protein phosphatase 5, catalytic subunit 
PPEF1                 0.059   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.049   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.045   protein phosphatase with EF hand calcium-binding dom...
PPEF2                 0.037   serine/threonine protein phosphatase with EF-hand mo...
LOC100292848          0.010   PREDICTED: hypothetical protein 
LOC100289782          0.010   PREDICTED: hypothetical protein XP_002347588 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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