Guide to the Human Genome
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Name: PPP6C Sequence: fasta or formatted (305aa) NCBI GI: 4506029
Description:

protein phosphatase 6, catalytic subunit isoform b

Referenced in:

Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [342aa] protein phosphatase 6, catalytic subunit isoform a
alt prot [283aa] protein phosphatase 6, catalytic subunit isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         16           2
 C cysteine            3.9         12           1
 D aspartate           7.5         23           1
 E glutamate           5.6         17           2
 F phenylalanine       4.9         15           1
 G glycine             5.6         17           2
 H histidine           2.3          7           1
 I isoleucine          5.6         17           1
 K lysine              4.9         15           1
 L leucine             9.8         30           3
 M methionine          1.6          5           1
 N asparagine          4.3         13           2
 P proline             5.2         16           2
 Q glutamine           3.3         10           1
 R arginine            5.6         17           1
 S serine              3.3         10           1
 T threonine           6.6         20           3
 V valine              7.5         23           1
 W tryptophan          2.0          6           1
 Y tyrosine            5.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 6, catalytic subunit isoform b [H... 
PPP6C                 0.969   protein phosphatase 6, catalytic subunit isoform a ...
PPP6C                 0.902   protein phosphatase 6, catalytic subunit isoform c ...
PPP4C                 0.618   protein phosphatase 4, catalytic subunit 
PPP2CB                0.565   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.565   protein phosphatase 2, catalytic subunit, beta isofor...
PPP2CA                0.559   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP1CA                0.390   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CA                0.390   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CC                0.388   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CB                0.375   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.375   protein phosphatase 1, catalytic subunit, beta isofor...
PPP1CA                0.362   protein phosphatase 1, catalytic subunit, alpha isof...
PPP3CA                0.306   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.306   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CA                0.301   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CB                0.300   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.300   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.300   protein phosphatase 3, catalytic subunit, beta isofo...
PPP3CC                0.291   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP5C                 0.291   protein phosphatase 5, catalytic subunit 
LOC100128362          0.254   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.251   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.251   PREDICTED: similar to protein phosphatase 2, cataly...
PPEF1                 0.159   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.143   protein phosphatase with EF hand calcium-binding dom...
PPEF2                 0.127   serine/threonine protein phosphatase with EF-hand mo...
PPEF1                 0.098   protein phosphatase with EF hand calcium-binding dom...
LCK                   0.008   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.008   lymphocyte-specific protein tyrosine kinase precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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