Guide to the Human Genome
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Name: PPP1CA Sequence: fasta or formatted (286aa) NCBI GI: 45827798
Description:

protein phosphatase 1, catalytic subunit, alpha isoform 2

Referenced in:

Myosin
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [330aa] protein phosphatase 1, catalytic subunit, alpha isoform 1
alt prot [341aa] protein phosphatase 1, catalytic subunit, alpha isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         14           2
 C cysteine            3.8         11           2
 D aspartate           8.0         23           1
 E glutamate           5.6         16           1
 F phenylalanine       6.3         18           2
 G glycine             8.4         24           2
 H histidine           2.1          6           1
 I isoleucine          5.6         16           2
 K lysine              6.6         19           2
 L leucine            10.8         31           3
 M methionine          2.1          6           2
 N asparagine          4.5         13           1
 P proline             4.9         14           2
 Q glutamine           3.5         10           1
 R arginine            5.2         15           2
 S serine              5.2         15           1
 T threonine           2.8          8           1
 V valine              3.8         11           2
 W tryptophan          1.0          3           1
 Y tyrosine            4.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, catalytic subunit, alpha isof... 
PPP1CA                0.964   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CA                0.948   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CC                0.851   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CB                0.844   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.844   protein phosphatase 1, catalytic subunit, beta isofor...
PPP2CB                0.426   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.426   protein phosphatase 2, catalytic subunit, beta isofor...
PPP2CA                0.419   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP4C                 0.417   protein phosphatase 4, catalytic subunit 
PPP6C                 0.389   protein phosphatase 6, catalytic subunit isoform a ...
PPP6C                 0.389   protein phosphatase 6, catalytic subunit isoform b [H...
PPP6C                 0.324   protein phosphatase 6, catalytic subunit isoform c ...
PPP3CA                0.318   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.318   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CA                0.317   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CC                0.315   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP3CB                0.313   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.313   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.313   protein phosphatase 3, catalytic subunit, beta isofo...
PPP5C                 0.311   protein phosphatase 5, catalytic subunit 
PPEF1                 0.199   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.182   protein phosphatase with EF hand calcium-binding dom...
PPEF2                 0.152   serine/threonine protein phosphatase with EF-hand mo...
LOC100128362          0.144   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.144   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.144   PREDICTED: similar to protein phosphatase 2, cataly...
PPEF1                 0.128   protein phosphatase with EF hand calcium-binding dom...
ZNF317                0.009   zinc finger protein 317 
TK2                   0.005   thymidine kinase 2, mitochondrial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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