Guide to the Human Genome
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Name: PPP6C Sequence: fasta or formatted (342aa) NCBI GI: 183603929
Description:

protein phosphatase 6, catalytic subunit isoform a

Referenced in:

Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [283aa] protein phosphatase 6, catalytic subunit isoform c
alt prot [305aa] protein phosphatase 6, catalytic subunit isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         19           2
 C cysteine            4.1         14           1
 D aspartate           6.7         23           1
 E glutamate           5.3         18           2
 F phenylalanine       5.6         19           1
 G glycine             6.4         22           2
 H histidine           2.3          8           1
 I isoleucine          5.3         18           1
 K lysine              4.7         16           1
 L leucine             9.9         34           3
 M methionine          1.5          5           1
 N asparagine          3.8         13           2
 P proline             7.0         24           3
 Q glutamine           2.9         10           1
 R arginine            5.6         19           1
 S serine              3.8         13           1
 T threonine           5.8         20           3
 V valine              7.3         25           1
 W tryptophan          1.8          6           1
 Y tyrosine            4.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 6, catalytic subunit isoform a ... 
PPP6C                 0.859   protein phosphatase 6, catalytic subunit isoform b [H...
PPP6C                 0.773   protein phosphatase 6, catalytic subunit isoform c ...
PPP4C                 0.521   protein phosphatase 4, catalytic subunit 
PPP2CB                0.476   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.476   protein phosphatase 2, catalytic subunit, beta isofor...
PPP2CA                0.471   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP1CA                0.335   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CA                0.335   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CC                0.334   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CB                0.330   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.330   protein phosphatase 1, catalytic subunit, beta isofor...
PPP1CA                0.321   protein phosphatase 1, catalytic subunit, alpha isof...
PPP3CA                0.270   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.270   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CA                0.265   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CB                0.265   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.265   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.265   protein phosphatase 3, catalytic subunit, beta isofo...
PPP3CC                0.258   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP5C                 0.258   protein phosphatase 5, catalytic subunit 
LOC100128362          0.224   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.223   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.223   PREDICTED: similar to protein phosphatase 2, cataly...
PPEF1                 0.141   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.127   protein phosphatase with EF hand calcium-binding dom...
PPEF2                 0.114   serine/threonine protein phosphatase with EF-hand mo...
PPEF1                 0.087   protein phosphatase with EF hand calcium-binding dom...
MDFI                  0.011   MyoD family inhibitor 
ROBO3                 0.009   roundabout, axon guidance receptor, homolog 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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