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Search of human proteins with 131887988
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|131887988 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A5 isoform 1 [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|131887988 family with sequence similarity 19 (chemokine (C-C ... 274 2e-74
gi|53933210 family with sequence similarity 19 (chemokine (C-C m... 199 4e-52
gi|30425496 family with sequence similarity 19 (chemokine (C-C m... 103 5e-23
gi|32698882 family with sequence similarity 19 (chemokine (C-C m... 101 1e-22
gi|53988383 family with sequence similarity 19 (chemokine (C-C m... 101 1e-22
gi|33300649 family with sequence similarity 19 (chemokine (C-C m... 99 7e-22
gi|50962799 family with sequence similarity 19 (chemokine (C-C m... 97 5e-21
gi|52486734 family with sequence similarity 19 (chemokine (C-C m... 55 1e-08
gi|54873613 agrin [Homo sapiens] 30 0.42
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 29 1.2
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 29 1.2
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 29 1.2
gi|4557679 jagged 1 precursor [Homo sapiens] 28 1.6
gi|148277014 fucosyltransferase 3 [Homo sapiens] 28 2.1
gi|148277012 fucosyltransferase 3 [Homo sapiens] 28 2.1
gi|148277010 fucosyltransferase 3 [Homo sapiens] 28 2.1
gi|4503809 fucosyltransferase 3 [Homo sapiens] 28 2.1
gi|24041035 notch 2 preproprotein [Homo sapiens] 28 2.7
gi|239750748 PREDICTED: hypothetical protein XP_002347523 [Homo ... 28 2.7
gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo ... 28 2.7
gi|28558988 thyroid peroxidase isoform d [Homo sapiens] 27 3.6
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 27 3.6
gi|110735443 delta-like 1 [Homo sapiens] 27 4.7
gi|28558982 thyroid peroxidase isoform a [Homo sapiens] 27 4.7
gi|28558984 thyroid peroxidase isoform b [Homo sapiens] 27 4.7
gi|28558990 thyroid peroxidase isoform e [Homo sapiens] 27 4.7
gi|239745542 PREDICTED: similar to hCG1793095 [Homo sapiens] 27 4.7
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 27 6.1
gi|239756213 PREDICTED: similar to hCG2042717 [Homo sapiens] 27 6.1
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 27 6.1
>gi|131887988 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A5 isoform 1 [Homo sapiens]
Length = 132
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MAPSPRTGSRQDATALPSMSSTFWAFMILASLLIAYCSQLAAGTCEIVTLDRDSSQPRRT 60
MAPSPRTGSRQDATALPSMSSTFWAFMILASLLIAYCSQLAAGTCEIVTLDRDSSQPRRT
Sbjct: 1 MAPSPRTGSRQDATALPSMSSTFWAFMILASLLIAYCSQLAAGTCEIVTLDRDSSQPRRT 60
Query: 61 IARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCT 120
IARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCT
Sbjct: 61 IARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCT 120
Query: 121 QPGGRIKTTTVS 132
QPGGRIKTTTVS
Sbjct: 121 QPGGRIKTTTVS 132
>gi|53933210 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A5 isoform 2 [Homo sapiens]
Length = 125
Score = 199 bits (507), Expect = 4e-52
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 39 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 98
QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD
Sbjct: 32 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 91
Query: 99 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132
MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS
Sbjct: 92 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
>gi|30425496 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A2 [Homo sapiens]
Length = 131
Score = 103 bits (256), Expect = 5e-23
Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 43 GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPC 102
GTCE+V L R ++ + QT +C+C GQ+AGTTRA P+CVDA I++ K WC M PC
Sbjct: 42 GTCEVVALHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVEQKWWCHMQPC 101
Query: 103 LEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132
LEGE C +L +R GW+C+ G ++KTT V+
Sbjct: 102 LEGEECKVLPDRKGWSCSS-GNKVKTTRVT 130
>gi|32698882 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A4 [Homo sapiens]
Length = 140
Score = 101 bits (252), Expect = 1e-22
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 39 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 98
Q+ GTCE+V + R ++ R QT +C+C GQ+AGTTRA+P+CV+A I+ K WC
Sbjct: 47 QIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCH 106
Query: 99 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132
M PCLEGE C +L + SGW+C+ G ++KTT V+
Sbjct: 107 MNPCLEGEDCKVLPDYSGWSCSS-GNKVKTTKVT 139
>gi|53988383 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A4 [Homo sapiens]
Length = 140
Score = 101 bits (252), Expect = 1e-22
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 39 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 98
Q+ GTCE+V + R ++ R QT +C+C GQ+AGTTRA+P+CV+A I+ K WC
Sbjct: 47 QIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCH 106
Query: 99 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132
M PCLEGE C +L + SGW+C+ G ++KTT V+
Sbjct: 107 MNPCLEGEDCKVLPDYSGWSCSS-GNKVKTTKVT 139
>gi|33300649 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 1 [Homo sapiens]
Length = 133
Score = 99.4 bits (246), Expect = 7e-22
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 24 WAFMILASLLIAYCSQLAA-GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRAR 82
W + LA+L + L GTCE++ R ++ R QT +C+C GQ+AGTTRA+
Sbjct: 24 WTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAK 83
Query: 83 PACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132
P+CVDA I+ + WC M PCL GE C +L + SGW+C+ G ++KTT V+
Sbjct: 84 PSCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSCSS-GHKVKTTKVT 132
>gi|50962799 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A1 [Homo sapiens]
Length = 133
Score = 96.7 bits (239), Expect = 5e-21
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 43 GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPC 102
GTCE++ R ++ R QT +C+C G++AGTTR RP+CVDA I+ K WC+M PC
Sbjct: 42 GTCEVIAAHRCCNKNRIEERSQTVKCSCLPGKVAGTTRNRPSCVDASIVIGKWWCEMEPC 101
Query: 103 LEGEGCDLLINRSGWTCTQPGGRIKTTTV 131
LEGE C L + SGW C G +IKTT +
Sbjct: 102 LEGEECKTLPDNSGWMCA-TGNKIKTTRI 129
>gi|52486734 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 2 [Homo sapiens]
Length = 169
Score = 55.5 bits (132), Expect = 1e-08
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 24 WAFMILASLLIAYCSQLAA-GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRAR 82
W + LA+L + L GTCE++ R ++ R QT +C+C GQ+AGTTRA+
Sbjct: 24 WTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAK 83
Query: 83 PACVD 87
P+CVD
Sbjct: 84 PSCVD 88
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 30.4 bits (67), Expect = 0.42
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 72 KGQIAGTTRARPACVDARIIKTK--------QWCDMLPCLEGEGCDLLINRSGWTCTQPG 123
K A TTR P +R+ + + CD PC G C G+TC+ P
Sbjct: 1300 KTTAAPTTRRPPTTAPSRVPGRRPPAPQQPPKPCDSQPCFHGGTCQDWALGGGFTCSCPA 1359
Query: 124 GR 125
GR
Sbjct: 1360 GR 1361
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 63 RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 120
+ + RCACR G + + CV R C P G C+L G C
Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262
Query: 121 QPGGRIK 127
GR K
Sbjct: 263 HSCGRCK 269
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 63 RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 120
+ + RCACR G + + CV R C P G C+L G C
Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262
Query: 121 QPGGRIK 127
GR K
Sbjct: 263 HSCGRCK 269
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 63 RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 120
+ + RCACR G + + CV R C P G C+L G C
Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262
Query: 121 QPGGRIK 127
GR K
Sbjct: 263 HSCGRCK 269
>gi|4557679 jagged 1 precursor [Homo sapiens]
Length = 1218
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 76 AGTTRARPACVDARIIKT---KQWCDMLPCLEGEGCDLLIN 113
A A+P CV+A+ K +CD LP G+ CD+ IN
Sbjct: 413 ANECEAKP-CVNAKSCKNLIASYYCDCLPGWMGQNCDININ 452
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 85 CVDARIIKTKQWCDMLPCLEGEG 107
C++ RI +K WC PCL +G
Sbjct: 885 CLNGRIACSKVWCGPRPCLLHKG 907
>gi|148277014 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 4 SPRTGSRQDATAL-PSMSSTFWAFMILASLLIAYCSQLAAGTCEI-VTLDR 52
+P SRQD T P++ W + + ++ CS++ GT + +T DR
Sbjct: 47 APSGSSRQDTTPTRPTLLILLWTWPFHIPVALSRCSEMVPGTADCHITADR 97
>gi|148277012 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 4 SPRTGSRQDATAL-PSMSSTFWAFMILASLLIAYCSQLAAGTCEI-VTLDR 52
+P SRQD T P++ W + + ++ CS++ GT + +T DR
Sbjct: 47 APSGSSRQDTTPTRPTLLILLWTWPFHIPVALSRCSEMVPGTADCHITADR 97
>gi|148277010 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 4 SPRTGSRQDATAL-PSMSSTFWAFMILASLLIAYCSQLAAGTCEI-VTLDR 52
+P SRQD T P++ W + + ++ CS++ GT + +T DR
Sbjct: 47 APSGSSRQDTTPTRPTLLILLWTWPFHIPVALSRCSEMVPGTADCHITADR 97
>gi|4503809 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 4 SPRTGSRQDATAL-PSMSSTFWAFMILASLLIAYCSQLAAGTCEI-VTLDR 52
+P SRQD T P++ W + + ++ CS++ GT + +T DR
Sbjct: 47 APSGSSRQDTTPTRPTLLILLWTWPFHIPVALSRCSEMVPGTADCHITADR 97
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 40 LAAGTCEIVTLDRDSSQPRRTIARQTARCA-------CRKGQIAGTTRARPACVDARIIK 92
L GTC + + D R ARC CRKG+ T + P C
Sbjct: 1314 LNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCPSPRD 1373
Query: 93 TKQWCDMLPCLEGEGC 108
+ C PC G C
Sbjct: 1374 CESGCASSPCQHGGSC 1389
>gi|239750748 PREDICTED: hypothetical protein XP_002347523 [Homo
sapiens]
Length = 260
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 96 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 127
W ++ LEG C++ + SG QPGG ++
Sbjct: 120 WVFLVAILEGVQCEVQLVESGGGLVQPGGSLR 151
>gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo
sapiens]
Length = 172
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 96 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 127
W ++ LEG C++ + SG QPGG ++
Sbjct: 7 WVFLVAILEGVQCEVQLVESGGGLVQPGGSLR 38
>gi|28558988 thyroid peroxidase isoform d [Homo sapiens]
Length = 889
Score = 27.3 bits (59), Expect = 3.6
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 11 QDATALPSMSSTFWAFMILASLLIAYCSQLAAGT-CEIVTLDRDSSQPRRTIARQTARCA 69
+D+ LP ++ W M LA+LLI + L + C S+ P T
Sbjct: 795 KDSGRLPRVT---WISMSLAALLIGGFAGLTSTVICRWTRTGTKSTLPISETGGGTPELR 851
Query: 70 CRKGQIAGTTRARPACVDA 88
C K Q GT+ R A D+
Sbjct: 852 CGKHQAVGTSPQRAAAQDS 870
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 27.3 bits (59), Expect = 3.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 84 ACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGW 117
+C + Q CD + C +G GC ++ GW
Sbjct: 2153 SCSNLTWCTNPQGCDRILCRQGLGCGTTCSKCGW 2186
>gi|110735443 delta-like 1 [Homo sapiens]
Length = 723
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 73 GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGG 124
GQ + T RP A CD PC G C L N ++CT P G
Sbjct: 308 GQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLEN--SYSCTCPPG 357
>gi|28558982 thyroid peroxidase isoform a [Homo sapiens]
Length = 933
Score = 26.9 bits (58), Expect = 4.7
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 12 DATALPSMSSTFWAFMILASLLIAYCSQLAAGT-CEIVTLDRDSSQPRRTIARQTARCAC 70
D+ LP ++ W M LA+LLI + L + C S+ P T C
Sbjct: 840 DSGRLPRVT---WISMSLAALLIGGFAGLTSTVICRWTRTGTKSTLPISETGGGTPELRC 896
Query: 71 RKGQIAGTTRARPACVDA 88
K Q GT+ R A D+
Sbjct: 897 GKHQAVGTSPQRAAAQDS 914
>gi|28558984 thyroid peroxidase isoform b [Homo sapiens]
Length = 876
Score = 26.9 bits (58), Expect = 4.7
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 12 DATALPSMSSTFWAFMILASLLIAYCSQLAAGT-CEIVTLDRDSSQPRRTIARQTARCAC 70
D+ LP ++ W M LA+LLI + L + C S+ P T C
Sbjct: 783 DSGRLPRVT---WISMSLAALLIGGFAGLTSTVICRWTRTGTKSTLPISETGGGTPELRC 839
Query: 71 RKGQIAGTTRARPACVDA 88
K Q GT+ R A D+
Sbjct: 840 GKHQAVGTSPQRAAAQDS 857
>gi|28558990 thyroid peroxidase isoform e [Homo sapiens]
Length = 760
Score = 26.9 bits (58), Expect = 4.7
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 12 DATALPSMSSTFWAFMILASLLIAYCSQLAAGT-CEIVTLDRDSSQPRRTIARQTARCAC 70
D+ LP ++ W M LA+LLI + L + C S+ P T C
Sbjct: 667 DSGRLPRVT---WISMSLAALLIGGFAGLTSTVICRWTRTGTKSTLPISETGGGTPELRC 723
Query: 71 RKGQIAGTTRARPACVDA 88
K Q GT+ R A D+
Sbjct: 724 GKHQAVGTSPQRAAAQDS 741
>gi|239745542 PREDICTED: similar to hCG1793095 [Homo sapiens]
Length = 148
Score = 26.9 bits (58), Expect = 4.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 96 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 127
W ++ L+G C++ + SG QPGG +K
Sbjct: 7 WVFLVAILQGVHCEVQLVESGRGLAQPGGYLK 38
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 26.6 bits (57), Expect = 6.1
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 29 LASLLIAYCSQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDA 88
LAS A+ + AG +V PR +AR A CAC AG T +P A
Sbjct: 50 LASRARAWRRRRQAGCLRVV--------PRPGVARAAACCAC---ACAGRTNRQPRPFQA 98
Query: 89 RII 91
R++
Sbjct: 99 RLL 101
>gi|239756213 PREDICTED: similar to hCG2042717 [Homo sapiens]
Length = 256
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 95 QWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 127
+W ++ LEG C++ + SG +PGG ++
Sbjct: 30 RWVFLVAILEGVQCEVQLVESGGGLVKPGGSLR 62
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 26.6 bits (57), Expect = 6.1
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 29 LASLLIAYCSQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDA 88
LAS A+ + AG +V PR +AR A CAC AG T +P A
Sbjct: 50 LASRARAWRRRRQAGCLRVV--------PRPGVARAAACCAC---ACAGRTNRQPRPFQA 98
Query: 89 RII 91
R++
Sbjct: 99 RLL 101
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.131 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,036,251
Number of Sequences: 37866
Number of extensions: 182257
Number of successful extensions: 590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 51
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.