Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13129016
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13129016 DET1 and DDB1 associated 1 [Homo sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13129016 DET1 and DDB1 associated 1 [Homo sapiens] 211 1e-55
gi|115298663 SCL/TAL1 interrupting locus isoform 1 [Homo sapiens] 33 0.037
gi|115298661 SCL/TAL1 interrupting locus isoform 2 [Homo sapiens] 33 0.037
gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo... 29 0.70
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 29 0.91
gi|116256358 secretory carrier membrane protein 1 [Homo sapiens] 28 1.2
gi|149944496 UBX domain containing 7 [Homo sapiens] 28 1.6
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 28 2.0
gi|239746922 PREDICTED: similar to cancer/testis antigen family ... 28 2.0
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 27 3.5
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 27 3.5
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 27 3.5
gi|23397429 eukaryotic translation initiation factor 3, subunit ... 27 3.5
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 27 3.5
gi|148746195 trichohyalin [Homo sapiens] 27 4.5
gi|145275198 ADAMTS-like 3 precursor [Homo sapiens] 27 4.5
gi|34304381 inversin isoform a [Homo sapiens] 27 4.5
gi|34304379 inversin isoform b [Homo sapiens] 27 4.5
gi|148728188 integrin, alpha E precursor [Homo sapiens] 26 5.9
gi|239752405 PREDICTED: similar to cancer/testis antigen family ... 26 5.9
gi|14149789 hypothetical protein LOC84070 [Homo sapiens] 26 5.9
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 26 5.9
gi|110349721 titin isoform novex-3 [Homo sapiens] 26 7.7
gi|110349719 titin isoform N2-A [Homo sapiens] 26 7.7
gi|110349717 titin isoform novex-2 [Homo sapiens] 26 7.7
gi|110349713 titin isoform novex-1 [Homo sapiens] 26 7.7
gi|110349715 titin isoform N2-B [Homo sapiens] 26 7.7
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 26 7.7
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 26 7.7
gi|31377697 glycosyltransferase 25 domain containing 1 [Homo sap... 26 7.7
>gi|13129016 DET1 and DDB1 associated 1 [Homo sapiens]
Length = 102
Score = 211 bits (536), Expect = 1e-55
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLH 60
MADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLH
Sbjct: 1 MADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLH 60
Query: 61 QQWDKKNAAKKRDQEQVELEGESSAPPRKVARTDSPDMHEDT 102
QQWDKKNAAKKRDQEQVELEGESSAPPRKVARTDSPDMHEDT
Sbjct: 61 QQWDKKNAAKKRDQEQVELEGESSAPPRKVARTDSPDMHEDT 102
>gi|115298663 SCL/TAL1 interrupting locus isoform 1 [Homo sapiens]
Length = 1288
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 11 YNKSNFSRFH-ADSVCKASNRRPS---VYLPTREYPSEQIIVTEKTNILLRYLHQQWDKK 66
+ S FH S C N P+ +YL Y + +++VTEKT I L Y H + +KK
Sbjct: 16 FPSSRMVPFHFPPSKCALWNPTPTGDFIYLHLSYYRNPKLVVTEKT-IRLAYRHAKQNKK 74
Query: 67 NAA--------KKRDQEQVELEGESSAPPRKV 90
N++ D+E V L + P R+V
Sbjct: 75 NSSCFLLGSLTADEDEEGVTLTVDRFDPGREV 106
>gi|115298661 SCL/TAL1 interrupting locus isoform 2 [Homo sapiens]
Length = 1287
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 11 YNKSNFSRFH-ADSVCKASNRRPS---VYLPTREYPSEQIIVTEKTNILLRYLHQQWDKK 66
+ S FH S C N P+ +YL Y + +++VTEKT I L Y H + +KK
Sbjct: 16 FPSSRMVPFHFPPSKCALWNPTPTGDFIYLHLSYYRNPKLVVTEKT-IRLAYRHAKQNKK 74
Query: 67 NAA--------KKRDQEQVELEGESSAPPRKV 90
N++ D+E V L + P R+V
Sbjct: 75 NSSCFLLGSLTADEDEEGVTLTVDRFDPGREV 106
>gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo
sapiens]
Length = 1980
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 64 DKKNAAKKRDQEQVELEGESSAPPRKVARTDSPD 97
+++N KKR Q+++ EGE P KV +++S D
Sbjct: 490 ERRNRRKKRKQKELS-EGEEKGDPEKVFKSESED 522
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 57 RYLHQQWDKKNAAKKRDQEQVELEG-ESSAPPRKVARTDSP 96
++ ++ +KN KKRD+E+ E G + P K+ R ++P
Sbjct: 613 KHAERERQQKNQKKKRDEEEEEASGLKEELIPEKLERVENP 653
>gi|116256358 secretory carrier membrane protein 1 [Homo sapiens]
Length = 338
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 7 GLPVYNKSNFSRFHADSVCK---ASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQW 63
GL YN + SR K N +P++ PT E+P+ I E L +Q
Sbjct: 33 GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQE 92
Query: 64 DKKNAAKKRDQEQVELEGES 83
+ + A + D+ + E++ S
Sbjct: 93 ELERKAAELDRREREMQNLS 112
>gi|149944496 UBX domain containing 7 [Homo sapiens]
Length = 489
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 62 QWDKKNAAKKRDQ------EQVELEGESSAPPRKVARTDS-PDMHEDT 102
+W + + + DQ E +L+G SS+PP+K AR++S D ED+
Sbjct: 241 EWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDS 288
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 22 DSVCKASNRRPSVYLPTREYPSEQIIVTEKTNI---LLRYLHQQWDK--KNAAKKRDQEQ 76
+ + + + P+ P E S + TE+ + +Y H++WD+ ++AA K ++E+
Sbjct: 210 EELAEEAAEEPAKEEPAAEEESAEEPATEEAAAPEEVTKYQHEKWDEEAQDAAGKEEKEE 269
Query: 77 VELEGESSAPPRK 89
E + E+ K
Sbjct: 270 KEKDAENKVKNSK 282
>gi|239746922 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 2 [Homo sapiens]
Length = 294
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 22 DSVCKASNRRPSVYLPTREYPSEQIIVTEKTNI---LLRYLHQQWDK--KNAAKKRDQEQ 76
+ + + + P+ P E S + TE+ + +Y H++WD+ ++AA K ++E+
Sbjct: 220 EELAEEAAEEPAKEEPAAEEESAEEPATEEAAAPEEVTKYQHEKWDEEAQDAAGKEEKEE 279
Query: 77 VELEGESSAPPRK 89
E + E+ K
Sbjct: 280 KEKDAENKVKNSK 292
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 64 DKKNAAKKRDQEQVELEGESSAPPRKVARTDSP 96
DK+++ + ++ + EL+ + APPR+ + SP
Sbjct: 43 DKRSSGQAGNKSERELQARTPAPPRERGESSSP 75
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 64 DKKNAAKKRDQEQVELEGESSAPPRKVARTDSP 96
DK+++ + ++ + EL+ + APPR+ + SP
Sbjct: 43 DKRSSGQAGNKSERELQARTPAPPRERGESSSP 75
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 64 DKKNAAKKRDQEQVELEGESSAPPRKVARTDSP 96
DK+++ + ++ + EL+ + APPR+ + SP
Sbjct: 43 DKRSSGQAGNKSERELQARTPAPPRERGESSSP 75
>gi|23397429 eukaryotic translation initiation factor 3, subunit M
[Homo sapiens]
Length = 374
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 6 KGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDK 65
K PV S + C A P+ R++ S+ + TEK + LLR L++
Sbjct: 115 KNTPVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVD 174
Query: 66 KNAAKKRDQEQVELEGESSAPPRKVARTDS 95
+ + VEL G + AR D+
Sbjct: 175 CKKSDAASKVMVELLGSYTEDNASQARVDA 204
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 46 IIVTEKTNILLRYLHQQWDKKNAAKKRDQEQVELEGESSAPPRKVARTDSPDMHEDT 102
I V++ T R LH+ + K+A KKR + Q + S+ P + D + E+T
Sbjct: 1480 IFVSKFTEFDARKLHKLY--KHAIKKRQESQQNSDQNSNLNPHVIRNPDVERLKENT 1534
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 18 RFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQV 77
++ A+ + +R S P RE Q+ E+ R+L ++ +K+ ++R + +
Sbjct: 770 QWQAEEKSERGRQRLSARPPLREQRERQLRAEERQQREQRFLPEEEEKEQRRRQRREREK 829
Query: 78 ELE 80
EL+
Sbjct: 830 ELQ 832
>gi|145275198 ADAMTS-like 3 precursor [Homo sapiens]
Length = 1691
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 31 RPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKN 67
RP++ P REYP + + Q W+ KN
Sbjct: 1005 RPALREPMREYPGMDHSEANSLGVTWHKMRQMWNNKN 1041
>gi|34304381 inversin isoform a [Homo sapiens]
Length = 1065
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 50 EKTNILLRYLHQQWDKKNAAKKRDQEQVELEGE 82
++ N+L++ H+Q K AAKKR++E E E
Sbjct: 577 DRKNLLMK--HEQLRKDAAAKKREEENKRKEAE 607
>gi|34304379 inversin isoform b [Homo sapiens]
Length = 895
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 50 EKTNILLRYLHQQWDKKNAAKKRDQEQVELEGE 82
++ N+L++ H+Q K AAKKR++E E E
Sbjct: 577 DRKNLLMK--HEQLRKDAAAKKREEENKRKEAE 607
>gi|148728188 integrin, alpha E precursor [Homo sapiens]
Length = 1179
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 5 LKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTRE----YPSEQIIVTEKTNILLRYLH 60
L+GL V +R A +VC S R Y + + +I ++K N+ +
Sbjct: 1013 LRGLQVVAVKKLTRTQASTVCTWSQERACAYSSVQHVEEWHSVSCVIASDKENVTVA-AE 1071
Query: 61 QQWDKKNAAKKRDQEQVELEGESS 84
WD K D ++++ GE S
Sbjct: 1072 ISWDHSEELLK-DVTELQILGEIS 1094
>gi|239752405 PREDICTED: similar to cancer/testis antigen family
147, member B1 [Homo sapiens]
Length = 290
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 57 RYLHQQWDK--KNAAKKRDQEQVELEGESSAPPRK 89
+Y H++WD+ ++AA K ++E+ E + E+ K
Sbjct: 254 KYQHEKWDEEAQDAAGKEEKEEKEKDAENKVKNSK 288
>gi|14149789 hypothetical protein LOC84070 [Homo sapiens]
Length = 893
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 50 EKTNILLRYLHQ----QWDKKNAAKKRDQEQVELEGESSAPPRK 89
+K LL HQ QW+ ++ A+++ + V+LE E +P R+
Sbjct: 504 QKKWALLEQEHQEKLRQWNLEDLAREQQRRWVQLEKEQESPRRE 547
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 58 YLHQQWDKKNAAKKRDQEQVELEGESSAPPRKV 90
Y +++K + +K+DQ V +E E P R++
Sbjct: 69 YTISPYNRKGSFRKQDQTHVNMEREQKPPERRM 101
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 36 LPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQ 76
+P Y +++I E + LRY +QW++ + K Q++
Sbjct: 1662 IPRGTYRAKEIAAPELEPLHLRYGQEQWEEGDLYDKEKQQK 1702
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 36 LPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQ 76
+P Y +++I E + LRY +QW++ + K Q++
Sbjct: 1662 IPRGTYRAKEIAAPELEPLHLRYGQEQWEEGDLYDKEKQQK 1702
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 36 LPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQ 76
+P Y +++I E + LRY +QW++ + K Q++
Sbjct: 1616 IPRGTYRAKEIAAPELEPLHLRYGQEQWEEGDLYDKEKQQK 1656
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 36 LPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQ 76
+P Y +++I E + LRY +QW++ + K Q++
Sbjct: 1616 IPRGTYRAKEIAAPELEPLHLRYGQEQWEEGDLYDKEKQQK 1656
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 36 LPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQ 76
+P Y +++I E + LRY +QW++ + K Q++
Sbjct: 1616 IPRGTYRAKEIAAPELEPLHLRYGQEQWEEGDLYDKEKQQK 1656
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 43 SEQIIVTEKTNILLRYL--HQQWDKKNAAKKRD-QEQV--ELEGESSAPPR 88
+E+I+ TE + L HQQ K+ +AKKRD Q+Q+ +GE P R
Sbjct: 1266 AEKILDTENLFEAQQLLLHHQQKTKRISAKKRDVQQQIAQAQQGEGGLPDR 1316
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 43 SEQIIVTEKTNILLRYL--HQQWDKKNAAKKRD-QEQV--ELEGESSAPPR 88
+E+I+ TE + L HQQ K+ +AKKRD Q+Q+ +GE P R
Sbjct: 1259 AEKILDTENLFEAQQLLLHHQQKTKRISAKKRDVQQQIAQAQQGEGGLPDR 1309
>gi|31377697 glycosyltransferase 25 domain containing 1 [Homo
sapiens]
Length = 622
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 13 KSNFS--RFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQ--WDKKNA 68
K++FS HA SV P + PT + + +T+++ H + WD+ +
Sbjct: 538 KAHFSLRNLHAFSV------EPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKS 591
Query: 69 AKKRDQEQVELEGESS 84
K R+Q+ + E ++S
Sbjct: 592 QKMREQQALSREAKNS 607
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,029,548
Number of Sequences: 37866
Number of extensions: 147198
Number of successful extensions: 474
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 35
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.