Guide to the Human Genome
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Name: STIL Sequence: fasta or formatted (1287aa) NCBI GI: 115298661
Description:

SCL/TAL1 interrupting locus isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1288aa} SCL/TAL1 interrupting locus isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         60           2
 C cysteine            2.7         35           2
 D aspartate           4.5         58           2
 E glutamate           6.7         86           3
 F phenylalanine       3.4         44           2
 G glycine             4.0         52           2
 H histidine           3.4         44           2
 I isoleucine          4.5         58           2
 K lysine              5.7         73           3
 L leucine             9.7        125           5
 M methionine          2.2         28           2
 N asparagine          6.3         81           2
 P proline             8.4        108           2
 Q glutamine           5.4         69           2
 R arginine            3.7         47           1
 S serine             11.5        148           4
 T threonine           5.1         65           2
 V valine              5.7         74           2
 W tryptophan          0.5          6           1
 Y tyrosine            2.0         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SCL/TAL1 interrupting locus isoform 2 
STIL                  0.998   SCL/TAL1 interrupting locus isoform 1 
RERE                  0.010   atrophin-1 like protein isoform b 
RERE                  0.010   atrophin-1 like protein isoform a 
RERE                  0.010   atrophin-1 like protein isoform a 
C13orf23              0.006   hypothetical protein LOC80209 isoform 2 
C13orf23              0.006   hypothetical protein LOC80209 isoform 1 
HELZ                  0.005   helicase with zinc finger domain 
MED15                 0.005   mediator complex subunit 15 isoform b 
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 
SHANK2                0.005   SH3 and multiple ankyrin repeat domains 2 isoform 1...
INPP5D                0.004   SH2 containing inositol phosphatase isoform a 
SHANK1                0.004   SH3 and multiple ankyrin repeat domains 1 
INPP5D                0.004   SH2 containing inositol phosphatase isoform b 
SNCAIP                0.004   synuclein alpha interacting protein 
RBM42                 0.004   RNA binding motif protein 42 
THAP5                 0.004   THAP domain containing 5 isoform 2 
THAP5                 0.004   THAP domain containing 5 isoform 1 
LMOD3                 0.004   leiomodin 3 (fetal) 
TCF12                 0.003   transcription factor 12 isoform a 
TCF12                 0.003   transcription factor 12 isoform a 
PHC3                  0.003   polyhomeotic like 3 
DDA1                  0.003   DET1 and DDB1 associated 1 
SEC23IP               0.003   Sec23-interacting protein p125 
SIN3A                 0.003   transcriptional co-repressor Sin3A 
SIN3A                 0.003   transcriptional co-repressor Sin3A 
SIN3A                 0.003   transcriptional co-repressor Sin3A 
UBN2                  0.003   ubinuclein 2 
LOC100293878          0.003   PREDICTED: similar to hCG1779533 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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