Guide to the Human Genome
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Name: FAM186B Sequence: fasta or formatted (893aa) NCBI GI: 14149789
Description:

hypothetical protein LOC84070

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         52           3
 C cysteine            0.8          7           1
 D aspartate           3.8         34           2
 E glutamate          10.0         89           4
 F phenylalanine       2.4         21           1
 G glycine             3.2         29           2
 H histidine           2.5         22           1
 I isoleucine          3.7         33           2
 K lysine              7.5         67           3
 L leucine            11.4        102           3
 M methionine          3.1         28           2
 N asparagine          1.9         17           1
 P proline             6.3         56           2
 Q glutamine           8.2         73           2
 R arginine            7.8         70           2
 S serine              8.2         73           3
 T threonine           5.4         48           4
 V valine              4.3         38           2
 W tryptophan          1.9         17           1
 Y tyrosine            1.9         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84070 
FAM186A               0.076   family with sequence similarity 186, member A [Homo...
GCC2                  0.019   GRIP and coiled-coil domain-containing 2 
LOC100133758          0.019   PREDICTED: hypothetical protein, partial 
LOC440243             0.018   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283685             0.017   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.017   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283767             0.017   golgi autoantigen, golgin subfamily a-like 
LOC400352             0.017   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.017   PREDICTED: similar to Putative golgin subfamily A m...
LOC727832             0.016   golgi autoantigen, golgin subfamily a-like 
LOC651807             0.016   PREDICTED: hypothetical protein 
TCHH                  0.016   trichohyalin 
CEP250                0.014   centrosomal protein 2 
WDR87                 0.014   NYD-SP11 protein 
LOC645202             0.013   PREDICTED: hypothetical protein LOC645202 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
NES                   0.012   nestin 
TCHP                  0.012   trichoplein 
TCHP                  0.012   trichoplein 
ITSN1                 0.011   intersectin 1 isoform ITSN-s 
ITSN1                 0.011   intersectin 1 isoform ITSN-l 
WDR67                 0.011   WD repeat domain 67 isoform 1 
SAFB2                 0.011   scaffold attachment factor B2 
AKAP13                0.011   A-kinase anchor protein 13 isoform 1 
AKAP13                0.011   A-kinase anchor protein 13 isoform 3 
AKAP13                0.011   A-kinase anchor protein 13 isoform 2 
CCDC11                0.011   coiled-coil domain containing 11 
CEP164                0.011   centrosomal protein 164kDa 
ACIN1                 0.010   apoptotic chromatin condensation inducer 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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