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Search of human proteins with 108773787
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|108773787 retinoblastoma 1 [Homo sapiens]
(928 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|108773787 retinoblastoma 1 [Homo sapiens] 1852 0.0
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 194 2e-49
gi|34577079 retinoblastoma-like protein 1 isoform a [Homo sapiens] 181 3e-45
gi|34577077 retinoblastoma-like protein 1 isoform b [Homo sapiens] 181 3e-45
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 49 3e-05
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 49 3e-05
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 42 0.003
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 42 0.003
gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f... 42 0.003
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 41 0.006
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ... 40 0.010
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 40 0.010
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 40 0.013
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 40 0.013
gi|61743942 abl-interactor 1 isoform a [Homo sapiens] 40 0.013
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 39 0.017
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 39 0.017
gi|33188449 serine/arginine-rich protein-specific kinase 2 isofo... 39 0.022
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 39 0.022
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 39 0.022
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 39 0.022
gi|46048439 N-acetyltransferase 6 [Homo sapiens] 39 0.029
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 39 0.029
gi|195947369 junction-mediating and regulatory protein [Homo sap... 38 0.038
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 38 0.038
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens] 38 0.038
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens] 38 0.038
gi|158534059 formin binding protein 4 [Homo sapiens] 38 0.050
gi|149944526 additional sex combs like 3 [Homo sapiens] 38 0.050
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 37 0.065
>gi|108773787 retinoblastoma 1 [Homo sapiens]
Length = 928
Score = 1852 bits (4797), Expect = 0.0
Identities = 928/928 (100%), Positives = 928/928 (100%)
Query: 1 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTAL 60
MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTAL
Sbjct: 1 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTAL 60
Query: 61 CQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTEL 120
CQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTEL
Sbjct: 61 CQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTEL 120
Query: 121 QKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS 180
QKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS
Sbjct: 121 QKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS 180
Query: 181 ISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYK 240
ISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYK
Sbjct: 181 ISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYK 240
Query: 241 TAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFM 300
TAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFM
Sbjct: 241 TAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFM 300
Query: 301 NSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKS 360
NSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKS
Sbjct: 301 NSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKS 360
Query: 361 NLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVK 420
NLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVK
Sbjct: 361 NLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVK 420
Query: 421 DIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDN 480
DIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDN
Sbjct: 421 DIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDN 480
Query: 481 IFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG 540
IFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG
Sbjct: 481 IFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG 540
Query: 541 NLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNH 600
NLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNH
Sbjct: 541 NLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNH 600
Query: 601 TAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYL 660
TAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYL
Sbjct: 601 TAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYL 660
Query: 661 RLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK 720
RLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK
Sbjct: 661 RLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK 720
Query: 721 FKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLS 780
FKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLS
Sbjct: 721 FKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLS 780
Query: 781 PIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFG 840
PIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFG
Sbjct: 781 PIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFG 840
Query: 841 TSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQK 900
TSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQK
Sbjct: 841 TSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQK 900
Query: 901 LAEMTSTRTRMQKQKMNDSMDTSNKEEK 928
LAEMTSTRTRMQKQKMNDSMDTSNKEEK
Sbjct: 901 LAEMTSTRTRMQKQKMNDSMDTSNKEEK 928
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 194 bits (494), Expect = 2e-49
Identities = 176/700 (25%), Positives = 298/700 (42%), Gaps = 98/700 (14%)
Query: 23 PPPPPPP-----EEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQKLKIPDHVRERAWLT 77
PPPPPPP +E+ E D ED + F LC +L + + R AW +
Sbjct: 10 PPPPPPPAAAASDEEEEDDGEAEDAAPPAESPTPQIQQRFDELCSRLNMDEAARAEAWDS 69
Query: 78 WEKVSSVDGVLGGYIQKKKELWGICIFIAAV----------DLDEMSFTFTELQKNIEIS 127
+ +S + G + W C A ++ + T + K E S
Sbjct: 70 YRSMSESYTLEGNDLH-----WLACALYVACRKSVPTVSKGTVEGNYVSLTRILKCSEQS 124
Query: 128 VHKFFNLLKEIDTSTKVD----NAMSRLLKKYDVLFALFSKLERTCELIYL----TQPSS 179
+ +FFN +K+ + + RL + + V +F K E + I+ QP
Sbjct: 125 LIEFFNKMKKWEDMANLPPHFRERTERLERNFTVSAVIFKKYEPIFQDIFKYPQEEQPRQ 184
Query: 180 SISTE-----INSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPML 234
+ + + W+ F+ AKG + DDLV S+ L+LC LD L
Sbjct: 185 QRGRKQRRQPCTVSEIFHFCWVLFIYAKGNFPMISDDLVNSYHLLLCALD----LVYGNA 240
Query: 235 LKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFK 294
L+ + ++ +P ++ A+ +K + IIE LC H+ + E K +
Sbjct: 241 LQCSNRKELV----NPNFKGLSEDFHAKDSKPSSDPPCIIEKLCSLHDGLVLEAKGIKEH 296
Query: 295 NFIPFMNSL--------------GLVTSNGLPE-VENLSKRYEEIYLKNKDLDARLFLDH 339
+ P++ L G + E + ++K YEE L +LD R+FL
Sbjct: 297 FWKPYIRKLYEKKLLKGKEENLTGFLEPGNFGESFKAINKAYEEYVLSVGNLDERIFLGE 356
Query: 340 DKTLQTDSI-----------------------DSFETQRTPRKSNLDEEVNVI----PPH 372
D + ++ F+ + R S V I P
Sbjct: 357 DAEEEIGTLSRCLNAGSGTETAERVQMKNILQQHFDKSKALRISTPLTGVRYIKENSPCV 416
Query: 373 TPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFA- 431
TPV T +++ +L +L + PSE L C+ +P ++I R+K++ I+ + F
Sbjct: 417 TPVSTATHSLSRLHTMLTGLRNAPSEKLEQILRTCSRDPTQAIANRLKEMFEIYSQHFQP 476
Query: 432 -KAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACA 490
+ EI S+ ++ LYY+V+ES+++ E++RL + S +L + FH SLLAC
Sbjct: 477 DEDFSNCAKEIASKHFRFAEMLYYKVLESVIEQEQKRLGDMDLSGILEQDAFHRSLLACC 536
Query: 491 LEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHL 550
LEVV +Y +FP+I + ++ + FYKVIE FI+AE L RE++KHL
Sbjct: 537 LEVVTFSYKPPG----------NFPFITEIFDVPLYHFYKVIEVFIRAEDGLCREVVKHL 586
Query: 551 ERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNHTAADMYLSPV 610
+ E +I++ LAW +SPL++ I+ +++R + E P NL + A L+P
Sbjct: 587 NQIEEQILDHLAWKPESPLWEKIRDNENRVPTCE--EVMPPQNLERADEICIAGSPLTPR 644
Query: 611 RSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLF 650
R + + T + + + T + + P +T LF
Sbjct: 645 RVTEVRADTGGLGRSITSPTTLYDRY-SSPPASTTRRRLF 683
Score = 94.0 bits (232), Expect = 6e-19
Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 18/211 (8%)
Query: 596 LQNNHTAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVY 655
LQ A +SP +K+G + V S++N +P K++SLSLF++KVY
Sbjct: 799 LQVPGQVAIQQISPGGQQQKQGQS--VTSSSN------------RPRKTSSLSLFFRKVY 844
Query: 656 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVK 715
LA +RL LC +L EL IWT F+ ++ ELM DRHLDQ++MC++Y + KV
Sbjct: 845 HLAAVRLRDLCAKL-DISDELRKKIWTCFEFSIIQCPELMMDRHLDQLLMCAIYVMAKVT 903
Query: 716 NIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTR 775
D F+ I+ Y+ P A + ++ VLIK + +S Q T + + ++R
Sbjct: 904 KEDKSFQNIMRCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRTSR 963
Query: 776 --PPTLSPIPHIP-RSPYKFPSSPLRIPGGN 803
P + +P P P +P R+ G N
Sbjct: 964 DSSPVMRSSSTLPVPQPSSAPPTPTRLTGAN 994
Score = 47.0 bits (110), Expect = 8e-05
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 27/135 (20%)
Query: 744 IKEEEYDSIIVFYNSVFMQRLKTNILQY--ASTRPPTLSPIPHIPRSPYKFPSSPLRI-- 799
++EEE +I FYN+++++++KT ++Y A+ P LSP P + SP RI
Sbjct: 997 MEEEERGDLIQFYNNIYIKQIKTFAMKYSQANMDAPPLSPYPFVR------TGSPRRIQL 1050
Query: 800 -PGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFGTSEKFQKINQMVCNSDRV 858
+YISP K+ T ++PR +I S S++ ++IN M+ +
Sbjct: 1051 SQNHPVYISPHKN----------ETMLSPREKIFYYFSNS--PSKRLREINSMIRTGETP 1098
Query: 859 LKRSA----EGSNPP 869
K+ +GS P
Sbjct: 1099 TKKRGILLEDGSESP 1113
>gi|34577079 retinoblastoma-like protein 1 isoform a [Homo sapiens]
Length = 1068
Score = 181 bits (459), Expect = 3e-45
Identities = 157/565 (27%), Positives = 257/565 (45%), Gaps = 91/565 (16%)
Query: 116 TFTELQKNIEISVHKFFNLLKE-IDTST---KVDNAMSRLLKKYDVLFALFSKLERTCEL 171
+ T + ++ ++S+ +FF+ +K+ +D S + + RL + ++V +F K E
Sbjct: 86 SLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKYEPIFLD 145
Query: 172 IYLTQ-------PSSSISTEINSAL--VLKVSWITFLLAKGEVLQMEDDLVISFQLMLCV 222
I+ P S I ++ + W F+ KG + DDLV S+ L+LC
Sbjct: 146 IFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSYHLLLCC 205
Query: 223 LDYFIK---LSPPM--LLKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVL 277
LD + P LL +K + + T E II VL
Sbjct: 206 LDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFTAS-------------EEPPCIIAVL 252
Query: 278 CKEHECNIDEVKNV---YFKNFIPFMNSLGLVTSNGLPEVEN-------LSKRYEEIYLK 327
C+ H+ + E K + YFK +I + ++ L ++ + ++K YEE L
Sbjct: 253 CELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSKAVNKEYEEYVLT 312
Query: 328 NKDLDARLFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNV---IPPH------------ 372
D D R+FL D + + F T+ TP L + NV + H
Sbjct: 313 VGDFDERIFLGADAEEEIGTPRKF-TRDTP-LGKLTAQANVEYNLQQHFEKKRSFAPSTP 370
Query: 373 --------------TPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKR 418
TPV + ++ +L I+ + PS+ LI+ F +C NP E+I+K
Sbjct: 371 LTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCVRNPVENIMKI 430
Query: 419 VKDIGYIFKEKFAKAVGQ---GCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSK 475
+K IG F + + ++ + ++ R KL LYY+++E+++ E RL + S
Sbjct: 431 LKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQETRRLHGMDMSV 490
Query: 476 LLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESF 535
LL +IFH SL+AC LE+V+ YS + +FPWI+ VLNL+ F FYKVIE
Sbjct: 491 LLEQDIFHRSLMACCLEIVLFAYS----------SPRTFPWIIEVLNLQPFYFYKVIEVV 540
Query: 536 IKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLP 595
I++E L+R+M+KHL E +I+ESLAW DS L++ ++ S ++ + E P N
Sbjct: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCE--EVIFPNNFE 598
Query: 596 LQNNHTAAD----MYLSPVRSPKKK 616
N M +SP+ P+ K
Sbjct: 599 TGNGGNVQGHLPLMPMSPLMHPRVK 623
Score = 117 bits (292), Expect = 6e-26
Identities = 100/332 (30%), Positives = 151/332 (45%), Gaps = 70/332 (21%)
Query: 594 LPLQNNHTAADMYLSPVRSPKKK---GSTTRVNSTANAETQATSAFQTQKPLKSTSLSLF 650
+PL N SPV S + N T E +T +P ++ SL+LF
Sbjct: 735 IPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGI---NRPKRTGSLALF 791
Query: 651 YKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYG 710
Y+KVY LA +RL LC +L + EL IWT F+ TL + +LM+DRHLDQ+++C+ Y
Sbjct: 792 YRKVYHLASVRLRDLCLKLDVSN-ELRRKIWTCFEFTLVHCPDLMKDRHLDQLLLCAFYI 850
Query: 711 ICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK------------------------- 745
+ KV + F+ I+ +Y++ P A ++ VL+K
Sbjct: 851 MAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNINDDFEMIDCDLE 910
Query: 746 -------------EEEYDSIIVFYNSVFMQRLKTNILQYASTR------PPTLSPIPHIP 786
+EE +I FYN++++ R+K+ L+Y P LSP PHI
Sbjct: 911 DATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDAPPLSPFPHIK 970
Query: 787 RSPYKFPSSPLRI-PGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFGTSEKF 845
+ P SP RI +IYI SP+K GL TPRS +L S S+
Sbjct: 971 QQ----PGSPRRISQQHSIYI----SPHKNGSGL------TPRSALLYKFNGS--PSKSL 1014
Query: 846 QKINQMVCNSDRVLKRS--AEGSNPPKPLKKL 875
+ IN M+ ++ K+ A S+ P K++
Sbjct: 1015 KDINNMIRQGEQRTKKRVIAIDSDAESPAKRV 1046
>gi|34577077 retinoblastoma-like protein 1 isoform b [Homo sapiens]
Length = 1014
Score = 181 bits (459), Expect = 3e-45
Identities = 157/565 (27%), Positives = 257/565 (45%), Gaps = 91/565 (16%)
Query: 116 TFTELQKNIEISVHKFFNLLKE-IDTST---KVDNAMSRLLKKYDVLFALFSKLERTCEL 171
+ T + ++ ++S+ +FF+ +K+ +D S + + RL + ++V +F K E
Sbjct: 86 SLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKYEPIFLD 145
Query: 172 IYLTQ-------PSSSISTEINSAL--VLKVSWITFLLAKGEVLQMEDDLVISFQLMLCV 222
I+ P S I ++ + W F+ KG + DDLV S+ L+LC
Sbjct: 146 IFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSYHLLLCC 205
Query: 223 LDYFIK---LSPPM--LLKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVL 277
LD + P LL +K + + T E II VL
Sbjct: 206 LDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFTAS-------------EEPPCIIAVL 252
Query: 278 CKEHECNIDEVKNV---YFKNFIPFMNSLGLVTSNGLPEVEN-------LSKRYEEIYLK 327
C+ H+ + E K + YFK +I + ++ L ++ + ++K YEE L
Sbjct: 253 CELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSKAVNKEYEEYVLT 312
Query: 328 NKDLDARLFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNV---IPPH------------ 372
D D R+FL D + + F T+ TP L + NV + H
Sbjct: 313 VGDFDERIFLGADAEEEIGTPRKF-TRDTP-LGKLTAQANVEYNLQQHFEKKRSFAPSTP 370
Query: 373 --------------TPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKR 418
TPV + ++ +L I+ + PS+ LI+ F +C NP E+I+K
Sbjct: 371 LTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCVRNPVENIMKI 430
Query: 419 VKDIGYIFKEKFAKAVGQ---GCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSK 475
+K IG F + + ++ + ++ R KL LYY+++E+++ E RL + S
Sbjct: 431 LKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQETRRLHGMDMSV 490
Query: 476 LLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESF 535
LL +IFH SL+AC LE+V+ YS + +FPWI+ VLNL+ F FYKVIE
Sbjct: 491 LLEQDIFHRSLMACCLEIVLFAYS----------SPRTFPWIIEVLNLQPFYFYKVIEVV 540
Query: 536 IKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLP 595
I++E L+R+M+KHL E +I+ESLAW DS L++ ++ S ++ + E P N
Sbjct: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCE--EVIFPNNFE 598
Query: 596 LQNNHTAAD----MYLSPVRSPKKK 616
N M +SP+ P+ K
Sbjct: 599 TGNGGNVQGHLPLMPMSPLMHPRVK 623
Score = 111 bits (277), Expect = 4e-24
Identities = 91/293 (31%), Positives = 133/293 (45%), Gaps = 66/293 (22%)
Query: 594 LPLQNNHTAADMYLSPVRSPKKK---GSTTRVNSTANAETQATSAFQTQKPLKSTSLSLF 650
+PL N SPV S + N T E +T +P ++ SL+LF
Sbjct: 735 IPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGI---NRPKRTGSLALF 791
Query: 651 YKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYG 710
Y+KVY LA +RL LC +L + EL IWT F+ TL + +LM+DRHLDQ+++C+ Y
Sbjct: 792 YRKVYHLASVRLRDLCLKLDVSN-ELRRKIWTCFEFTLVHCPDLMKDRHLDQLLLCAFYI 850
Query: 711 ICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK------------------------- 745
+ KV + F+ I+ +Y++ P A ++ VL+K
Sbjct: 851 MAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNINDDFEMIDCDLE 910
Query: 746 -------------EEEYDSIIVFYNSVFMQRLKTNILQYASTR------PPTLSPIPHIP 786
+EE +I FYN++++ R+K+ L+Y P LSP PHI
Sbjct: 911 DATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDAPPLSPFPHIK 970
Query: 787 RSPYKFPSSPLRI-PGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGES 838
+ P SP RI +IYI SP+K GL TPRS +L S
Sbjct: 971 QQ----PGSPRRISQQHSIYI----SPHKNGSGL------TPRSALLYKFNGS 1009
>gi|55956904 mitogen-activated protein kinase kinase kinase 4
isoform a [Homo sapiens]
Length = 1608
Score = 48.5 bits (114), Expect = 3e-05
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 6 PRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPE 40
P A T AAA EPP PPPPPPP +PE +S PE
Sbjct: 11 PPAFAVTPAAAMEEPPPPPPPPPPPPEPETESEPE 45
>gi|55956902 mitogen-activated protein kinase kinase kinase 4
isoform b [Homo sapiens]
Length = 1558
Score = 48.5 bits (114), Expect = 3e-05
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 6 PRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPE 40
P A T AAA EPP PPPPPPP +PE +S PE
Sbjct: 11 PPAFAVTPAAAMEEPPPPPPPPPPPPEPETESEPE 45
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 41.6 bits (96), Expect = 0.003
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 3 PKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGP 39
P P + AA +PPAPPPPPPP P ++ P
Sbjct: 113 PPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAP 149
Score = 31.2 bits (69), Expect = 4.7
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 10 AATAAAAAAEPPAP-------------PPPPPPEEDPEQDSGPEDLP 43
AA AAA AA PPAP PP PPP P E P
Sbjct: 103 AAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAP 149
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 41.6 bits (96), Expect = 0.003
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 3 PKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGP 39
P P + AA +PPAPPPPPPP P ++ P
Sbjct: 113 PPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAP 149
Score = 31.2 bits (69), Expect = 4.7
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 10 AATAAAAAAEPPAP-------------PPPPPPEEDPEQDSGPEDLP 43
AA AAA AA PPAP PP PPP P E P
Sbjct: 103 AAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAP 149
>gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f
[Homo sapiens]
Length = 194
Score = 41.6 bits (96), Expect = 0.003
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDF 57
P K +K A AAAA A PAP P P P + E+ DL +++EF + ++ +F
Sbjct: 3 PKKDVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKI---DLSAIKIEFSKEQQDEF 55
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 40.8 bits (94), Expect = 0.006
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 3 PKTPRKTAATAAAAAAEPP----APPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFT 58
P TP K T PP PPPPPPP +DPE P D +F P +
Sbjct: 532 PATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYA 591
Query: 59 AL 60
+
Sbjct: 592 GI 593
Score = 31.2 bits (69), Expect = 4.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 2 PPKTPRKTAATAAAAAAE-PPAPPPPPPPEEDPEQDS 37
P P + A A +E PP PPPPP P P DS
Sbjct: 580 PDFVPPPPPSYAGIAGSELPPPPPPPPAPAPAPVPDS 616
>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
sapiens]
Length = 1214
Score = 40.0 bits (92), Expect = 0.010
Identities = 20/34 (58%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 10 AATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLP 43
AA A A PP PPPPPPPEE DS PE P
Sbjct: 2 AAAAGAPPPGPPQPPPPPPPEE--SSDSEPEAEP 33
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.0 bits (92), Expect = 0.010
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLP 43
PP PR+ A A AA EPP PPPP PP P+Q P P
Sbjct: 192 PPAGPRR-APPPAVAAREPPLPPPPQPP-APPQQQQPPPPQP 231
Score = 37.7 bits (86), Expect = 0.050
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLP 43
PP PR AAAAA P P P PPP P + P P
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAP 149
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 39.7 bits (91), Expect = 0.013
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 2 PPKTPRKT--------AATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETE 53
PP P+ T A A+ P PPPPPPP++ P D P P +++E+ E
Sbjct: 334 PPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEE 393
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 39.7 bits (91), Expect = 0.013
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 2 PPKTPRKT--------AATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETE 53
PP P+ T A A+ P PPPPPPP++ P D P P +++E+ E
Sbjct: 339 PPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEE 398
>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
Length = 508
Score = 39.7 bits (91), Expect = 0.013
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 2 PPKTPRKT--------AATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETE 53
PP P+ T A A+ P PPPPPPP++ P D P P +++E+ E
Sbjct: 366 PPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEE 425
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 39.3 bits (90), Expect = 0.017
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 2 PPKTPRKTAATAAA-----AAAEPPAPPPPPPPEEDPEQDSGPEDLPL 44
PP P T + A PP PPPPPPP P +GP PL
Sbjct: 368 PPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPL 415
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 39.3 bits (90), Expect = 0.017
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 1 MPPKTPRKTAATAAAAAAE------------PPAPPPPPPPEEDPEQDSGPEDLPLV 45
+PP +PR + A AA PP PPPPPPP P S P PLV
Sbjct: 145 IPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLV 201
Score = 32.0 bits (71), Expect = 2.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 3 PKTPRKTAATAAAAAAEPPAPPPPPPPEEDP 33
P T A PP PPPPPPP P
Sbjct: 206 PLTKGNLPVVAPPVPCAPPPPPPPPPPTPPP 236
Score = 31.6 bits (70), Expect = 3.6
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 11 ATAAAAAAEPPAPPPPPPP 29
A+ A A EPPAPPPP PP
Sbjct: 280 ASPAQDAQEPPAPPPPLPP 298
>gi|33188449 serine/arginine-rich protein-specific kinase 2
isoform a [Homo sapiens]
Length = 699
Score = 38.9 bits (89), Expect = 0.022
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 4 KTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEP 55
K P+K A PP PPPPPPP P+ + ++ + EE E+P
Sbjct: 20 KHPKKPEPQQKAPLVPPPPPPPPPPPPPLPDPTPPEPEEEILGSDDEEQEDP 71
Score = 32.3 bits (72), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 21 PAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQ 62
P PPPPPPP P D P + L ++ E+ D C+
Sbjct: 35 PPPPPPPPPPPPPLPDPTPPEPEEEILGSDDEEQEDPADYCK 76
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 38.9 bits (89), Expect = 0.022
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 18 AEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETE 53
A+ P PPPPPPP++ P D P P +++E+ E
Sbjct: 334 ADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEE 369
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 38.9 bits (89), Expect = 0.022
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRL 47
P K P + A PP PPPPPPP P P P V+L
Sbjct: 1979 PVKIPNTVSTPLQAPPPTPPPPPPPPPPPPPPPPPPPPSAPPQVQL 2024
Score = 34.3 bits (77), Expect = 0.55
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPE--DLPL 44
PP TP PP PPPPPPP P Q P DLPL
Sbjct: 1993 PPPTP-----PPPPPPPPPPPPPPPPPPPSAPPQVQLPVSLDLPL 2032
Score = 31.2 bits (69), Expect = 4.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 3 PKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETE-EPDFTALC 61
P +A T PP PPPPPPP P + E E+ + +P+
Sbjct: 3101 PALSLSSAPTKPLLQTPPPPPPPPPPP---PSSSLSGQQTEQQNKESEKKQTKPNKVKKI 3157
Query: 62 QKLKIPDHVRERAWLTWEKVSSVDGVLG 89
++ ++ E+ EK+SS VLG
Sbjct: 3158 KEEELEATKPEKHPKKEEKISSALSVLG 3185
Score = 30.8 bits (68), Expect = 6.1
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 20 PPAPPPPPPPEEDPEQDS--GPEDLP 43
PP PPPPPP P Q S GP +P
Sbjct: 1958 PPPPPPPPPLPPAPPQPSSMGPVKIP 1983
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 38.9 bits (89), Expect = 0.022
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 RKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALC 61
R AA A +A PP PPPPPP P++ PE+ P V E E +E + + C
Sbjct: 728 RGAAAEGAKSAEPPPEQPPPPPPPAPPKKLLSPEE-PAVS-ELESVKENNCASNC 780
>gi|46048439 N-acetyltransferase 6 [Homo sapiens]
Length = 308
Score = 38.5 bits (88), Expect = 0.029
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPE---EDPEQDSGPEDLPLVRLEFE 50
P K P TA A PP PPPPP PE P SGP L+ +++
Sbjct: 243 PRKAPNLTAQAAPRGPKGPPLPPPPPLPECLTISPPVPSGPPSKSLLETQYQ 294
>gi|148229134 ring finger and KH domain containing 2 [Homo
sapiens]
Length = 659
Score = 38.5 bits (88), Expect = 0.029
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 1 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPE 40
MP + A AA A P PPPPPPP P GPE
Sbjct: 1 MPSGSSAALALAAAPAPLPQPPPPPPPPPPPLPPPSGGPE 40
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 38.1 bits (87), Expect = 0.038
Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 20 PPAPPPPPPPEEDPEQDSGPEDL--PLVRLEFEETEEP 55
PP PPPPPPP +DSGPE L L R E E P
Sbjct: 815 PPPPPPPPPPPLPVAKDSGPETLEKDLPRKEGNEKRIP 852
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 38.1 bits (87), Expect = 0.038
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 17 AAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEP 55
+A PP P P P P+ DP DS P P ++ E E+P
Sbjct: 128 SAAPPEPAPEPAPQPDPRPDSQPTPKPALQPELPTQEDP 166
>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo
sapiens]
Length = 457
Score = 38.1 bits (87), Expect = 0.038
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 4 KTPRKTAATAAAAAAEPPAPPPPPPPEE--DPEQDSGP 39
+ P A AA A A P APPPPPPP DP GP
Sbjct: 49 RRPEGAPAPAARAPAAPAAPPPPPPPPRTADPGGSPGP 86
>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
Length = 250
Score = 38.1 bits (87), Expect = 0.038
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 4 KTPRKTAATAAAAAAEPPAPPPPPPPEE--DPEQDSGP 39
+ P A AA A A P APPPPPPP DP GP
Sbjct: 49 RRPEGAPAPAARAPAAPAAPPPPPPPPRTADPGGSPGP 86
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 37.7 bits (86), Expect = 0.050
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 1 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEP 55
+ P P + PP PPPPPPP ED E + V +E E +EEP
Sbjct: 703 LQPPLPLEMPPPPPPPPESPPPPPPPPPPAEDGE-------IQEVEMEDEGSEEP 750
Score = 34.7 bits (78), Expect = 0.42
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 11 ATAAAAAAEPPAPPPPPPPEEDPEQDSGPED 41
A A EPP PPPPPPP P P +
Sbjct: 896 AVPTATIIEPPPPPPPPPPPPPPAPKMPPPE 926
Score = 33.9 bits (76), Expect = 0.72
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 1 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPE 34
+ P R TA PP PPPPPPP P+
Sbjct: 888 LQPVQARGAVPTATIIEPPPPPPPPPPPPPPAPK 921
Score = 32.7 bits (73), Expect = 1.6
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 3 PKTPRKTAATAAAAAAEPPAP---PPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPD 56
P TP T + +PP P PPPPPP + P P E +E E D
Sbjct: 688 PLTPFWTLLQSNVPVLQPPLPLEMPPPPPPPPESPPPPPPPPPPAEDGEIQEVEMED 744
Score = 30.8 bits (68), Expect = 6.1
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 10 AATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQK 63
A A PP PPPPPPP + PE R + + + +L +K
Sbjct: 896 AVPTATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKK 949
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 37.7 bits (86), Expect = 0.050
Identities = 19/64 (29%), Positives = 25/64 (39%)
Query: 2 PPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALC 61
PP P A PP PPP PPP + E S + P+ + P T +C
Sbjct: 2017 PPPPPPPPPPPPLALPPPPPPPPPLPPPLPNAEVPSDQKQPPVTMETTKRLSWPQSTGIC 2076
Query: 62 QKLK 65
+K
Sbjct: 2077 SNIK 2080
Score = 32.7 bits (73), Expect = 1.6
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 1 MPPKTPRKTAATA------AAAAAEPPAPPPPPPPEEDPEQDSGPEDLP 43
MP K + TA A PP PPPPPPP P P LP
Sbjct: 1994 MPMKEGDEVGGTAHTMPNKALVHPPPPPPPPPPPPLALPPPPPPPPPLP 2042
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 37.4 bits (85), Expect = 0.065
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 21 PAPPPPPPPEEDPEQDSGPEDLPLVRLEF--EETEEPDFT 58
P P P PPPE PE P+ PL LEF E EP+ T
Sbjct: 115 PEPVPVPPPEPQPEPQPLPDPAPLPELEFESERVHEPEPT 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,977,388
Number of Sequences: 37866
Number of extensions: 1817218
Number of successful extensions: 26838
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 19975
Number of HSP's gapped (non-prelim): 4769
length of query: 928
length of database: 18,247,518
effective HSP length: 112
effective length of query: 816
effective length of database: 14,006,526
effective search space: 11429325216
effective search space used: 11429325216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.