Guide to the Human Genome
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Name: RBL1 Sequence: fasta or formatted (1014aa) NCBI GI: 34577077
Description:

retinoblastoma-like protein 1 isoform b

Referenced in:

E2F Pathways
RB1 and Related Functions

Other entries for this name:
alt prot [1068aa] retinoblastoma-like protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         62           3
 C cysteine            2.3         23           2
 D aspartate           4.7         48           2
 E glutamate           7.2         73           3
 F phenylalanine       4.5         46           2
 G glycine             4.7         48           2
 H histidine           2.8         28           1
 I isoleucine          6.2         63           2
 K lysine              6.4         65           2
 L leucine            10.5        106           3
 M methionine          2.7         27           2
 N asparagine          4.3         44           2
 P proline             5.8         59           2
 Q glutamine           3.6         36           2
 R arginine            5.5         56           2
 S serine              7.8         79           3
 T threonine           5.3         54           2
 V valine              5.9         60           2
 W tryptophan          0.7          7           1
 Y tyrosine            3.0         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma-like protein 1 isoform b 
RBL1                  0.998   retinoblastoma-like protein 1 isoform a 
RBL2                  0.482   retinoblastoma-like 2 (p130) 
RB1                   0.077   retinoblastoma 1 
MUC4                  0.005   mucin 4 isoform a 
CCDC22                0.004   coiled-coil domain containing 22 
MUC16                 0.003   mucin 16 
TSC22D1               0.003   TSC22 domain family, member 1 isoform 1 
C13orf23              0.003   hypothetical protein LOC80209 isoform 2 
C13orf23              0.003   hypothetical protein LOC80209 isoform 1 
ARID2                 0.003   AT rich interactive domain 2 (ARID, RFX-like) 
FLJ22184              0.003   PREDICTED: hypothetical protein FLJ22184 
LARP1                 0.003   la related protein isoform 2 
LARP1                 0.003   la related protein isoform 1 
EIF3H                 0.003   eukaryotic translation initiation factor 3, subunit 3...
ZNF687                0.002   zinc finger protein 687 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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