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Search of human proteins with 4557841
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557841 recombination activating gene 1 [Homo sapiens]
(1043 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557841 recombination activating gene 1 [Homo sapiens] 2127 0.0
gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens] 58 4e-08
gi|30520320 ring finger protein 166 [Homo sapiens] 57 7e-08
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 55 3e-07
gi|20270353 tripartite motif-containing 43 [Homo sapiens] 54 8e-07
gi|37595555 ring finger protein 125 [Homo sapiens] 53 2e-06
gi|88953346 PREDICTED: Tripartite motif-containing protein 43-li... 52 3e-06
gi|5454014 tripartite motif-containing 38 [Homo sapiens] 52 4e-06
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 51 5e-06
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 51 5e-06
gi|15208660 tripartite motif protein 21 [Homo sapiens] 51 7e-06
gi|239755282 PREDICTED: similar to Tripartite motif-containing p... 50 1e-05
gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo ... 50 1e-05
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 49 2e-05
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 49 2e-05
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 49 2e-05
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 49 2e-05
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 48 4e-05
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 48 4e-05
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 48 6e-05
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 47 7e-05
gi|22749269 ring finger protein 129 [Homo sapiens] 47 9e-05
gi|169202375 PREDICTED: tripartite motif-containing protein 64B-... 46 2e-04
gi|169202730 PREDICTED: similar to hCG1802386 [Homo sapiens] 46 2e-04
gi|89034675 PREDICTED: similar to hCG1802386 [Homo sapiens] 46 2e-04
gi|51470879 PREDICTED: similar to hCG1802386 [Homo sapiens] 46 2e-04
gi|8923898 zinc finger protein 313 [Homo sapiens] 46 2e-04
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 46 2e-04
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 46 2e-04
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 46 2e-04
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 2127 bits (5510), Expect = 0.0
Identities = 1043/1043 (100%), Positives = 1043/1043 (100%)
Query: 1 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE 60
MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE
Sbjct: 1 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE 60
Query: 61 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA 120
QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA
Sbjct: 61 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA 120
Query: 121 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW 180
DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
Sbjct: 121 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW 180
Query: 181 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL 240
SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL
Sbjct: 181 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL 240
Query: 241 DQARQARQRKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL 300
DQARQARQRKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
Sbjct: 241 DQARQARQRKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL 300
Query: 301 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA 360
ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
Sbjct: 301 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA 360
Query: 361 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA 420
KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
Sbjct: 361 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA 420
Query: 421 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS 480
FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
Sbjct: 421 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS 480
Query: 481 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG 540
CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
Sbjct: 481 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG 540
Query: 541 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE 600
LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
Sbjct: 541 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE 600
Query: 601 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL 660
SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
Sbjct: 601 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL 660
Query: 661 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG 720
MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
Sbjct: 661 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG 720
Query: 721 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK 780
LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
Sbjct: 721 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK 780
Query: 781 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL 840
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
Sbjct: 781 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL 840
Query: 841 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC 900
RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
Sbjct: 841 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC 900
Query: 901 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA 960
PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
Sbjct: 901 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA 960
Query: 961 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN 1020
SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
Sbjct: 961 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN 1020
Query: 1021 PQASLGDPLGIEDSLESQDSMEF 1043
PQASLGDPLGIEDSLESQDSMEF
Sbjct: 1021 PQASLGDPLGIEDSLESQDSMEF 1043
>gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens]
Length = 728
Score = 58.2 bits (139), Expect = 4e-08
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 258 SSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCI 317
S+ D A C + H + +PE + C IC L DP++T C H +C +C+
Sbjct: 6 SANDPEPLCAVCGQAHSLEENHFYSYPEEVDDDLICHICLQALLDPLDTPCGHTYCTLCL 65
Query: 318 LRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKE-CNEEVSLEKYNHHI 376
L V +CP R P + +LN L+V CP +E C + + HH
Sbjct: 66 TNFL-VEKDFCPMDRKPLVLQHCKKSSILVNKLLNKLLVTCPFREHCTQVLQRCDLEHHF 124
Query: 377 SS 378
+
Sbjct: 125 QT 126
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 57.4 bits (137), Expect = 7e-08
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 292 SCQICEHILADPVET-NCKHVFCRVCILRCLKVMGSYCPSCRYPCFP--TDLESPVKSFL 348
+C IC + PV +C H FC C+ CL+V CP CR P P D + V+ L
Sbjct: 32 TCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQL 91
Query: 349 SVLNSLMVKCPAKECNEEVSLEKYNHHISS 378
S K P + CN++V+L K HISS
Sbjct: 92 S-----SYKAPCRGCNKKVTLAKMRVHISS 116
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 55.5 bits (132), Expect = 3e-07
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 293 CQICEHILADPVETN-CKHVFCRVCILRCLKVMGSYCPSCR---------YPCFPTDLES 342
C +C+ +L PV T C+HVFCR C L ++ G++CP CR P DLE+
Sbjct: 18 CPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDLEN 77
Query: 343 PVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKE 384
++ F S +C C +++ + HH S K+ ++
Sbjct: 78 IMRKF-----SGSCRC----CAKQIKFYRMRHHYKSCKKYQD 110
>gi|20270353 tripartite motif-containing 43 [Homo sapiens]
Length = 446
Score = 53.9 bits (128), Expect = 8e-07
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 35/193 (18%)
Query: 282 DFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLK----VMGSYCPSCRYPCFP 337
DF F K ++C IC + L DPV C H FCR C+ CL + CP+CR P
Sbjct: 4 DFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCL--CLSWEEAQSPANCPACREPSPK 61
Query: 338 TDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKG----- 392
D ++ + +L +L+ + +S EK +H+++K++F ++K
Sbjct: 62 MDFKTNI-----LLKNLVTIARKASLWQFLSSEK--QICGTHRQTKKMFCDMDKSLLCLL 114
Query: 393 -------GRPRQHLLSLTRRAQKHR---LRELKLQVKAFADK-----EEGGDVKSVCMTL 437
G + H + A++HR L+++++ K + EEG +
Sbjct: 115 CSNSQEHGAHKHH--PIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRTAFLWRGNV 172
Query: 438 FLLALRARNEHRQ 450
L A RNE+R+
Sbjct: 173 VLRAQMIRNEYRK 185
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 52.8 bits (125), Expect = 2e-06
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 284 PEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESP 343
PE V S C +C +L PV T C HVFCR CI LK CP CR + P
Sbjct: 28 PELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCR--AYLPSEGVP 85
Query: 344 VKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHI 376
+ S C EC+ V L + HI
Sbjct: 86 ATDVAKRMKSEYKNC--AECDTLVCLSEMRAHI 116
>gi|88953346 PREDICTED: Tripartite motif-containing protein 43-like
protein 1 [Homo sapiens]
Length = 446
Score = 52.0 bits (123), Expect = 3e-06
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 282 DFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLK----VMGSYCPSCRYPCFP 337
DF F K ++C IC + L DPV C H FCR C+ CL + CP+CR P
Sbjct: 4 DFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCL--CLSWEEAQSPANCPACREPSPK 61
Query: 338 TDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINK 391
D ++ + +L +L+ + +S EK +H+++K++F ++K
Sbjct: 62 MDFKTNI-----LLKNLVTIARKASLWQFLSSEK--QICGTHRQTKKMFCDMDK 108
>gi|5454014 tripartite motif-containing 38 [Homo sapiens]
Length = 465
Score = 51.6 bits (122), Expect = 4e-06
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 288 VKSISCQICEHILADPVETNCKHVFCRVCIL--------RCLKVMGSYCPSCRYPCFPTD 339
++ +C IC ++ +PV NC H +C +CI + L+ CP CR P F D
Sbjct: 11 MEEATCSICLSLMTNPVSINCGHSYCHLCITDFFKNPSQKQLRQETFCCPQCRAP-FHMD 69
Query: 340 LESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNH--HISSHKESKEIFVHINKGGRPRQ 397
P K S++ +L KE ++E+S E++ H+ E + I + + +
Sbjct: 70 SLRPNKQLGSLIEAL------KETDQEMSCEEHGEQFHLFCEDEGQLICWRCERAPQHKG 123
Query: 398 HLLSLTR---RAQKHRLRELKLQVKAFADK 424
H +L + K +L++ ++K D+
Sbjct: 124 HTTALVEDVCQGYKEKLQKAVTKLKQLEDR 153
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 51.2 bits (121), Expect = 5e-06
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 281 VDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDL 340
V+F C IC L + V+T C H FC+ CI++ ++ G CP L
Sbjct: 58 VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 117
Query: 341 ESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHH 375
P + SLMVKCP + C ++ L H
Sbjct: 118 -FPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH 151
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 51.2 bits (121), Expect = 5e-06
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 281 VDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDL 340
V+F C IC L + V+T C H FC+ CI++ ++ G CP L
Sbjct: 58 VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 117
Query: 341 ESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHH 375
P + SLMVKCP + C ++ L H
Sbjct: 118 -FPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH 151
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 50.8 bits (120), Expect = 7e-06
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 289 KSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFL 348
+ ++C IC +PV C H FC+ CI + K GS CP CR +L P +
Sbjct: 12 EEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLR-PNRQLA 70
Query: 349 SVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQK 408
+++N+L KE ++E + H E +F K G+ + + +R+ +
Sbjct: 71 NMVNNL------KEISQEAREGTQGERCAVHGERLHLF--CEKDGKALCWVCAQSRKHRD 122
Query: 409 HRLRELKLQVKAFADK 424
H + L+ + + +K
Sbjct: 123 HAMVPLEEAAQEYQEK 138
>gi|239755282 PREDICTED: similar to Tripartite motif-containing
protein 43-like protein 1 [Homo sapiens]
Length = 185
Score = 49.7 bits (117), Expect = 1e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 277 KLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRC 320
K + +DFP+ F K ++C IC + L DP+ C H FCR C+ C
Sbjct: 59 KKMDLDFPQAFQKELNCLICLNYLIDPITIGCGHSFCRPCLCLC 102
>gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo
sapiens]
Length = 185
Score = 49.7 bits (117), Expect = 1e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 277 KLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRC 320
K + +DFP+ F K ++C IC + L DP+ C H FCR C+ C
Sbjct: 59 KKMDLDFPQAFQKELNCLICLNYLIDPITIGCGHSFCRPCLCLC 102
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens]
Length = 1884
Score = 49.3 bits (116), Expect = 2e-05
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 289 KSISCQICEHILADPVETNCKHVFCRVCILRCL--KVMGSYCPSCRYPCFPTDLESPVKS 346
K + C IC ++ +PV T C H+FC+ C+L+ L K S CP C+ L+ +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79
Query: 347 FLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESK-------EIFVHINKGGRPRQHL 399
V L + C + + LE N + + KE+ E+ + + G R R
Sbjct: 80 SQLVEELLKIICAFQ---LDTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKR 136
Query: 400 LSLTRRAQKHRLRELKLQVK 419
L L + L+E L V+
Sbjct: 137 L-LQSEPENPSLQETSLSVQ 155
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens]
Length = 699
Score = 49.3 bits (116), Expect = 2e-05
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 289 KSISCQICEHILADPVETNCKHVFCRVCILRCL--KVMGSYCPSCRYPCFPTDLESPVKS 346
K + C IC ++ +PV T C H+FC+ C+L+ L K S CP C+ L+ +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79
Query: 347 FLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESK-------EIFVHINKGGRPRQHL 399
V L + C + + LE N + + KE+ E+ + + G R R
Sbjct: 80 SQLVEELLKIICAFQ---LDTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKR 136
Query: 400 LSLTRRAQKHRLRELKLQVK 419
L L + L+E L V+
Sbjct: 137 L-LQSEPENPSLQETSLSVQ 155
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens]
Length = 759
Score = 49.3 bits (116), Expect = 2e-05
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 289 KSISCQICEHILADPVETNCKHVFCRVCILRCL--KVMGSYCPSCRYPCFPTDLESPVKS 346
K + C IC ++ +PV T C H+FC+ C+L+ L K S CP C+ L+ +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79
Query: 347 FLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESK-------EIFVHINKGGRPRQHL 399
V L + C + + LE N + + KE+ E+ + + G R R
Sbjct: 80 SQLVEELLKIICAFQ---LDTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKR 136
Query: 400 LSLTRRAQKHRLRELKLQVK 419
L L + L+E L V+
Sbjct: 137 L-LQSEPENPSLQETSLSVQ 155
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 49.3 bits (116), Expect = 2e-05
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 289 KSISCQICEHILADPVETNCKHVFCRVCILRCL--KVMGSYCPSCRYPCFPTDLESPVKS 346
K + C IC ++ +PV T C H+FC+ C+L+ L K S CP C+ L+ +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79
Query: 347 FLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESK-------EIFVHINKGGRPRQHL 399
V L + C + + LE N + + KE+ E+ + + G R R
Sbjct: 80 SQLVEELLKIICAFQ---LDTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKR 136
Query: 400 LSLTRRAQKHRLRELKLQVK 419
L L + L+E L V+
Sbjct: 137 L-LQSEPENPSLQETSLSVQ 155
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 293 CQICEHILADPVETNCKHVFCRVCILRCLKVMGS----YCPSCRYPC 335
C IC+ L + V TNC H+FCRVC+ + ++ + CP CR PC
Sbjct: 14 CPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPC 60
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 48.1 bits (113), Expect = 4e-05
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 289 KSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGS--YCPSCRYPCFPTDLESPVKS 346
+ ++C IC L DPV +C HVFCR C + GS CP C+ P F + PV
Sbjct: 12 EEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKP-FKKENIRPVWQ 70
Query: 347 FLSVLNSL-MVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRR 405
S++ ++ +K EV+ E+ + + K + + G + L + R
Sbjct: 71 LASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDG----KLLCVMCRE 126
Query: 406 AQKHRLRELKLQVKA 420
+++HR L KA
Sbjct: 127 SREHRPHTAVLMEKA 141
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 47.8 bits (112), Expect = 6e-05
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 278 LLAVDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCL-KVMGSY-CPSCR 332
+ A D + + +C IC DPV T+C H FCR CI RC + G Y CP CR
Sbjct: 1 MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECR 57
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 47.4 bits (111), Expect = 7e-05
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 282 DFPEHF--VKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCR 332
D PE V C +C + +PV T C H FC+ C+ RCL YCP C+
Sbjct: 466 DIPEELIDVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLD-HAPYCPLCK 517
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 291 ISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCR 332
+ C C L++PV C H +CR C+ R L+ + C CR
Sbjct: 121 LRCLGCRGFLSEPVTVPCGHSYCRRCLRRELR---ARCRLCR 159
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 47.0 bits (110), Expect = 9e-05
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 292 SCQICEHILADPVETNCKHVFCRVCILRCLKVMGSY--CPSCRYPCFPTD---LESPVKS 346
SC IC L DPV NC H FCR C+ K + CP CR+ CFP +++
Sbjct: 15 SCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRF-CFPYKSFRRNPQLRN 73
Query: 347 FLSVLNSLMV-KCPAKECNEEVSLEKYNHHIS 377
+ L + + K E EK+N ++
Sbjct: 74 LTEIAKQLQIRRSKRKRQKENAMCEKHNQFLT 105
>gi|169202375 PREDICTED: tripartite motif-containing protein
64B-like [Homo sapiens]
Length = 449
Score = 46.2 bits (108), Expect = 2e-04
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 287 FVKSISCQICEHILADPVETNCKHVFCRVCILRCLKV--MGSYCPSCR----YPCFPTDL 340
F + C IC + DPV +C H FCR C+ C + CPSCR P F T+L
Sbjct: 9 FQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKTSEKPNFNTNL 68
Query: 341 ESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINK 391
L L+SL + + N ++ H+E+KE+F +K
Sbjct: 69 ------VLKKLSSLARQTRPQNINSSDNI------CVLHEETKELFCEADK 107
>gi|169202730 PREDICTED: similar to hCG1802386 [Homo sapiens]
Length = 452
Score = 45.8 bits (107), Expect = 2e-04
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 287 FVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMG--SYCPSCRYPCFPTDLESPV 344
F + + C IC + DPV +C H FCR C + M + C C+ T + +
Sbjct: 9 FQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWQDMAVLAQCSKCK----KTTRQRNL 64
Query: 345 KSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTR 404
K+ + + N + A++ + L +H+E+KE+F ++K L L
Sbjct: 65 KTNICLKNMASI---ARKASLRQFLSSEEQICGTHRETKEMFCEVDK-----SLLCLLCS 116
Query: 405 RAQKHR 410
+Q+HR
Sbjct: 117 NSQEHR 122
>gi|89034675 PREDICTED: similar to hCG1802386 [Homo sapiens]
Length = 452
Score = 45.8 bits (107), Expect = 2e-04
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 287 FVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMG--SYCPSCRYPCFPTDLESPV 344
F + + C IC + DPV +C H FCR C + M + C C+ T + +
Sbjct: 9 FQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWQDMAVLAQCSKCK----KTTRQRNL 64
Query: 345 KSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTR 404
K+ + + N + A++ + L +H+E+KE+F ++K L L
Sbjct: 65 KTNICLKNMASI---ARKASLRQFLSSEEQICGTHRETKEMFCEVDK-----SLLCLLCS 116
Query: 405 RAQKHR 410
+Q+HR
Sbjct: 117 NSQEHR 122
>gi|51470879 PREDICTED: similar to hCG1802386 [Homo sapiens]
Length = 452
Score = 45.8 bits (107), Expect = 2e-04
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 287 FVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMG--SYCPSCRYPCFPTDLESPV 344
F + + C IC + DPV +C H FCR C + M + C C+ T + +
Sbjct: 9 FQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWQDMAVLAQCSKCK----KTTRQRNL 64
Query: 345 KSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTR 404
K+ + + N + A++ + L +H+E+KE+F ++K L L
Sbjct: 65 KTNICLKNMASI---ARKASLRQFLSSEEQICGTHRETKEMFCEVDK-----SLLCLLCS 116
Query: 405 RAQKHR 410
+Q+HR
Sbjct: 117 NSQEHR 122
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 292 SCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFP----TDLESPVKSF 347
+C +C + PV+ C HVFC C+ CLK C CR P +LE ++S
Sbjct: 28 TCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAVELERQIES- 86
Query: 348 LSVLNSLMVKCPAKECNEEVSLEKYNHHISS 378
+ C + L K H+++
Sbjct: 87 --------TETSCHGCRKNFFLSKIRSHVAT 109
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 45.8 bits (107), Expect = 2e-04
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 291 ISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLES--PVKSFL 348
+ C +C +L DP+ T C HVFC C+L + GS CR +L P+K +
Sbjct: 16 LKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVLPLKRLI 75
Query: 349 SVLNSLMVKC--PAKECNEEVSLEKYNHHI 376
L+ +KC + C V L++ H+
Sbjct: 76 LKLD---IKCAYATRGCGRVVKLQQLPEHL 102
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 292 SCQICEHILADPVETNCKHVFCRVCILRCLKVMGS--------------YCPSCRYPCFP 337
+C IC + +PV C H FCR CI RC + G+ CP CR P P
Sbjct: 28 TCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCREPARP 87
Query: 338 TDL 340
+ L
Sbjct: 88 SQL 90
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 292 SCQICEHILADPVETNCKHVFCRVCILRCLKVMGS--------------YCPSCRYPCFP 337
+C IC + +PV C H FCR CI RC + G+ CP CR P P
Sbjct: 28 TCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCREPARP 87
Query: 338 TDL 340
+ L
Sbjct: 88 SQL 90
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,459,391
Number of Sequences: 37866
Number of extensions: 1856890
Number of successful extensions: 7658
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 7329
Number of HSP's gapped (non-prelim): 408
length of query: 1043
length of database: 18,247,518
effective HSP length: 112
effective length of query: 931
effective length of database: 14,006,526
effective search space: 13040075706
effective search space used: 13040075706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.