Guide to the Human Genome
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Name: LOC120824 Sequence: fasta or formatted (452aa) NCBI GI: 51470879
Description:

PREDICTED: similar to hCG1802386

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [452aa] PREDICTED: similar to hCG1802386
alt prot [452aa] PREDICTED: similar to hCG1802386
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         18           2
 C cysteine            5.5         25           2
 D aspartate           4.6         21           1
 E glutamate           7.7         35           3
 F phenylalanine       5.8         26           2
 G glycine             4.4         20           1
 H histidine           4.0         18           1
 I isoleucine          5.1         23           2
 K lysine              4.9         22           2
 L leucine             9.7         44           3
 M methionine          3.8         17           1
 N asparagine          4.6         21           2
 P proline             3.5         16           2
 Q glutamine           4.9         22           2
 R arginine            7.3         33           2
 S serine              7.1         32           2
 T threonine           3.8         17           2
 V valine              4.6         21           2
 W tryptophan          2.2         10           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1802386 
LOC120824             0.998   PREDICTED: similar to hCG1802386 
LOC120824             0.994   PREDICTED: similar to hCG1802386 
SPRYD5                0.852   SPRY domain containing 5 
LOC283116             0.711   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.711   PREDICTED: similar to ring finger protein 18 
LOC283116             0.711   PREDICTED: similar to ring finger protein 18 
LOC653111             0.704   PREDICTED: similar to ring finger protein 18 
TRIM49                0.704   ring finger protein 18 
LOC729384             0.692   hypothetical protein LOC729384 
LOC100134006          0.692   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.692   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.692   PREDICTED: similar to ring finger protein 18 
LOC399939             0.692   PREDICTED: similar to ring finger protein 18 
LOC283116             0.567   PREDICTED: similar to ring finger protein 18 isofor...
TRIM43                0.444   tripartite motif-containing 43 
LOC653192             0.439   PREDICTED: Tripartite motif-containing protein 43-li...
LOC340970             0.437   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.437   PREDICTED: similar to tripartite motif-containing 5...
TRIM53                0.436   tripartite motif-containing 53 
LOC642425             0.436   tripartite motif-containing 53-like 
LOC642425             0.436   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC340970             0.436   PREDICTED: similar to tripartite motif-containing 5...
TRIM64                0.375   tripartite motif-containing 64 
LOC642446             0.375   PREDICTED: tripartite motif-containing protein 64B-...
LOC646754             0.355   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.355   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.355   PREDICTED: tripartite motif-containing protein 64C-...
LOC100289112          0.355   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.355   tripartite motif-containing 77 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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