BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4507803 urocortin preproprotein [Homo sapiens] (124 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4507803 urocortin preproprotein [Homo sapiens] 243 3e-65 gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] 52 1e-07 gi|148839382 ring finger protein 169 [Homo sapiens] 33 0.056 gi|31377697 glycosyltransferase 25 domain containing 1 [Homo sap... 32 0.096 gi|15082240 urocortin 2 preproprotein [Homo sapiens] 31 0.21 gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 30 0.47 gi|170763515 DMRT-like family A1 [Homo sapiens] 30 0.47 gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo ... 29 0.81 gi|239742785 PREDICTED: hypothetical protein XP_002342651 [Homo ... 29 0.81 gi|81295809 pericentrin [Homo sapiens] 29 0.81 gi|8924248 SRY-box 18 [Homo sapiens] 29 0.81 gi|32880229 selenoprotein O [Homo sapiens] 29 0.81 gi|20270347 ankyrin repeat domain 54 [Homo sapiens] 29 0.81 gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1 gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1 gi|167555110 kinesin family member C1 [Homo sapiens] 29 1.1 gi|45238845 urocortin 3 preproprotein [Homo sapiens] 29 1.1 gi|116292168 KRAB A domain containing 1 [Homo sapiens] 29 1.1 gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 28 1.4 gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 28 1.4 gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 28 1.4 gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor ... 28 1.4 gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor... 28 1.4 gi|116256475 zinc finger protein 827 [Homo sapiens] 28 1.4 gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8 gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8 gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 28 1.8 gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 28 2.4 gi|169162343 PREDICTED: hypothetical protein [Homo sapiens] 28 2.4 gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 28 2.4 >gi|4507803 urocortin preproprotein [Homo sapiens] Length = 124 Score = 243 bits (620), Expect = 3e-65 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE 60 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE Sbjct: 1 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE 60 Query: 61 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD 120 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD Sbjct: 61 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD 120 Query: 121 SVGK 124 SVGK Sbjct: 121 SVGK 124 >gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] Length = 196 Score = 52.0 bits (123), Expect = 1e-07 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 58 LAERFPRRAGPGRLGLGTAGERPRR-DNPSLSIDLTFHLLRTLLELARTQSQRERAEQNR 116 LAER R A G A ER RR + P +S+DLTFHLLR +LE+AR + ++A NR Sbjct: 132 LAERGARNALGGHQ---EAPERERRSEEPPISLDLTFHLLREVLEMARAEQLAQQAHSNR 188 Query: 117 IIFDSVGK 124 + + +GK Sbjct: 189 KLMEIIGK 196 >gi|148839382 ring finger protein 169 [Homo sapiens] Length = 708 Score = 33.1 bits (74), Expect = 0.056 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 11 AALLLLVQLCPGSSQRSPEAAGVQDPSLR-WSPG-----ARNQGGGARALLLLLAERF-P 63 AAL LC G +QR+ +AAG P R PG AR+ G +L A R P Sbjct: 79 AALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARRRARDDGQADSEVLGECARRSQP 138 Query: 64 RRAGPGR-LGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNR 116 R P R G AG RP ++ + + F + R ++L++ RE E R Sbjct: 139 ERCRPRRDGGAAAAGPRPEQEPRAAPAEPDF-IFRAPIKLSKPGELREEYESLR 191 >gi|31377697 glycosyltransferase 25 domain containing 1 [Homo sapiens] Length = 622 Score = 32.3 bits (72), Expect = 0.096 Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 2 RQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAER 61 R+ G+ L LLLL L PG+ P A P RWSP + Q R L+ LLA R Sbjct: 9 RRRGQPLLALLLLLLAPLPPGA----PPGADAYFPEERWSPESPLQ--APRVLIALLA-R 61 Query: 62 FPRRAGPGRLGLGTAGERPR 81 A P LG PR Sbjct: 62 NAAHALPTTLGALERLRHPR 81 >gi|15082240 urocortin 2 preproprotein [Homo sapiens] Length = 112 Score = 31.2 bits (69), Expect = 0.21 Identities = 17/37 (45%), Positives = 23/37 (62%) Query: 87 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVG 123 LS+D+ LL+ LLE AR ++ RE+A N I VG Sbjct: 74 LSLDVPIGLLQILLEQARARAAREQATTNARILARVG 110 >gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo sapiens] Length = 2923 Score = 30.0 bits (66), Expect = 0.47 Identities = 20/52 (38%), Positives = 23/52 (44%) Query: 15 LLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRA 66 + +QL G S E G+Q SLR PG N G A L L A P A Sbjct: 1664 ITLQLREGHVMLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHA 1715 >gi|170763515 DMRT-like family A1 [Homo sapiens] Length = 504 Score = 30.0 bits (66), Expect = 0.47 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 12/72 (16%) Query: 24 SQRSPEAAGVQD---PSLRWSPGARNQGGGARALLLLLAERFPRRAGP---GRLGLGTAG 77 +Q EA G+Q L W PG R GGG R AE GP LGLG Sbjct: 147 AQEESEARGLQRLLCSGLSWPPGGRASGGGGR------AENPQSTGGPAAGAALGLGALR 200 Query: 78 ERPRRDNPSLSI 89 + P+ + Sbjct: 201 QASGSATPAFEV 212 >gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo sapiens] Length = 121 Score = 29.3 bits (64), Expect = 0.81 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 21 PG-SSQRSPEAAGV-QDPSLRWSPGARNQGGGARALLLLLA--ERFPRRAGPGRLGLGTA 76 PG S++RS + PS R G A AL + R PRR P G G+ Sbjct: 34 PGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRPSPLGAGSGSR 93 Query: 77 GERPRRDNPSLSIDLTFH 94 E PRR P+L+ L+ H Sbjct: 94 DECPRRRCPALARRLSDH 111 >gi|239742785 PREDICTED: hypothetical protein XP_002342651 [Homo sapiens] Length = 121 Score = 29.3 bits (64), Expect = 0.81 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 21 PG-SSQRSPEAAGV-QDPSLRWSPGARNQGGGARALLLLLA--ERFPRRAGPGRLGLGTA 76 PG S++RS + PS R G A AL + R PRR P G G+ Sbjct: 34 PGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRPSPLGAGSGSR 93 Query: 77 GERPRRDNPSLSIDLTFH 94 E PRR P+L+ L+ H Sbjct: 94 DECPRRRCPALARRLSDH 111 >gi|81295809 pericentrin [Homo sapiens] Length = 3336 Score = 29.3 bits (64), Expect = 0.81 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 2 RQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAER 61 R+A +A L A+LL + + ++ P AAG P L+W R Q L +L +R Sbjct: 1883 RKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQW---LRAQCARLSRQLQVLHQR 1939 Query: 62 FPR 64 F R Sbjct: 1940 FLR 1942 >gi|8924248 SRY-box 18 [Homo sapiens] Length = 384 Score = 29.3 bits (64), Expect = 0.81 Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 19/77 (24%) Query: 25 QRSPEAAGVQD--PSLR---WSPG------ARNQGGGARALLLLLAERFP--------RR 65 QRSP G QD P+ R W+PG R G AL A P R Sbjct: 2 QRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRS 61 Query: 66 AGPGRLGLGTAGERPRR 82 PGR GL AG R+ Sbjct: 62 PEPGRYGLSPAGRGERQ 78 >gi|32880229 selenoprotein O [Homo sapiens] Length = 669 Score = 29.3 bits (64), Expect = 0.81 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 2 RQAGRAALLAALLLLVQLC-PGSSQRSPEAAGVQDPSLRWSPGARNQGGGARAL 54 R A A+L AA LL + C P + RS + +P+ RW G R RAL Sbjct: 5 RAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRAL 58 >gi|20270347 ankyrin repeat domain 54 [Homo sapiens] Length = 300 Score = 29.3 bits (64), Expect = 0.81 Identities = 20/65 (30%), Positives = 26/65 (40%) Query: 49 GGARALLLLLAERFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQ 108 GGAR L A R P +L + G + L + H+LR LE Q Sbjct: 198 GGARVDALDRAGRTPLHLAKSKLNILQEGHAQCLEAVRLEVKQIIHMLREYLERLGQHEQ 257 Query: 109 RERAE 113 RER + Sbjct: 258 RERLD 262 >gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] Length = 1297 Score = 28.9 bits (63), Expect = 1.1 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 8 ALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAG 67 A AA V+ G + R P A G PS R PGAR + RA + L P RA Sbjct: 906 AAAAAAAQGVRAAQGRAHR-PGAQGA--PSHRHRPGARGRRSRRRAAVALAGGAHPARAA 962 Query: 68 PGR 70 GR Sbjct: 963 LGR 965 >gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] Length = 1297 Score = 28.9 bits (63), Expect = 1.1 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 8 ALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAG 67 A AA V+ G + R P A G PS R PGAR + RA + L P RA Sbjct: 906 AAAAAAAQGVRAAQGRAHR-PGAQGA--PSHRHRPGARGRRSRRRAAVALAGGAHPARAA 962 Query: 68 PGR 70 GR Sbjct: 963 LGR 965 >gi|167555110 kinesin family member C1 [Homo sapiens] Length = 673 Score = 28.9 bits (63), Expect = 1.1 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 64 RRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIF 119 RRAGPG L R + +D HL R +ART +Q ER+ ++ +F Sbjct: 488 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVART-AQNERSSRSHSVF 542 >gi|45238845 urocortin 3 preproprotein [Homo sapiens] Length = 161 Score = 28.9 bits (63), Expect = 1.1 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Query: 43 GARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLEL 102 GAR GGAR R+ +A P + P R +LS+D+ +++ L + Sbjct: 85 GAR---GGARGTRY----RYVSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIMNLLFNI 137 Query: 103 ARTQSQRERAEQNRIIFDSVGK 124 A+ ++ R +A N + +G+ Sbjct: 138 AKAKNLRAQAAANAHLMAQIGR 159 >gi|116292168 KRAB A domain containing 1 [Homo sapiens] Length = 1030 Score = 28.9 bits (63), Expect = 1.1 Identities = 16/47 (34%), Positives = 24/47 (51%) Query: 10 LAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56 L LL ++ P + R P +GV + L+ +PGA +G G LL Sbjct: 269 LQGLLHCLKELPEAQDRHPSPSGVGNRRLQENPGAWKRGSGGPGYLL 315 >gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] Length = 1072 Score = 28.5 bits (62), Expect = 1.4 Identities = 18/65 (27%), Positives = 27/65 (41%) Query: 19 LCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGE 78 L P ++ R G++ L PG GG +R + +P G G G G+ G Sbjct: 163 LLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGS 222 Query: 79 RPRRD 83 + R D Sbjct: 223 KRRLD 227 >gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] Length = 1200 Score = 28.5 bits (62), Expect = 1.4 Identities = 18/65 (27%), Positives = 27/65 (41%) Query: 19 LCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGE 78 L P ++ R G++ L PG GG +R + +P G G G G+ G Sbjct: 163 LLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGS 222 Query: 79 RPRRD 83 + R D Sbjct: 223 KRRLD 227 >gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] Length = 1069 Score = 28.5 bits (62), Expect = 1.4 Identities = 18/65 (27%), Positives = 27/65 (41%) Query: 19 LCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGE 78 L P ++ R G++ L PG GG +R + +P G G G G+ G Sbjct: 163 LLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGS 222 Query: 79 RPRRD 83 + R D Sbjct: 223 KRRLD 227 >gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor [Homo sapiens] Length = 650 Score = 28.5 bits (62), Expect = 1.4 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 20 CPGSSQRSPEAAGVQDPSLR-WSPGARNQG 48 CP P V DPS R W PG+R +G Sbjct: 210 CPPPGTPDPSGTAVGDPSTRSWPPGSRVEG 239 >gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor [Homo sapiens] Length = 651 Score = 28.5 bits (62), Expect = 1.4 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 20 CPGSSQRSPEAAGVQDPSLR-WSPGARNQG 48 CP P V DPS R W PG+R +G Sbjct: 210 CPPPGTPDPSGTAVGDPSTRSWPPGSRVEG 239 >gi|116256475 zinc finger protein 827 [Homo sapiens] Length = 1077 Score = 28.5 bits (62), Expect = 1.4 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 33 VQDPSLRWSP--------GARNQGGGARALLLLLAERFPRRAGPGRLGLG--TAGERPRR 82 + DP ++ SP G + +GGG + ++ P R G G+ E P+ Sbjct: 469 IPDPDVKGSPHLSDSACLGQQREGGGTELVGTMMTSNTPERTSQGGAGVSPLLVKEEPKE 528 Query: 83 DN 84 DN Sbjct: 529 DN 530 >gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] Length = 461 Score = 28.1 bits (61), Expect = 1.8 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 18 QLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56 +LC G S R + A PS W+PG R G G +L Sbjct: 310 RLC-GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPML 347 >gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] Length = 461 Score = 28.1 bits (61), Expect = 1.8 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 18 QLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56 +LC G S R + A PS W+PG R G G +L Sbjct: 310 RLC-GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPML 347 >gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo sapiens] Length = 461 Score = 28.1 bits (61), Expect = 1.8 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 18 QLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56 +LC G S R + A PS W+PG R G G +L Sbjct: 310 RLC-GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPML 347 >gi|238908524 hypothetical protein LOC389333 [Homo sapiens] Length = 1015 Score = 27.7 bits (60), Expect = 2.4 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 21 PGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERP 80 PGS + + P+ W A +G GA+ L + A+ +R GPG G P Sbjct: 38 PGSPEPPDVGPDAKGPA-NWPWVAPGRGAGAQPRLSVSAQNSRQRHGPGSGFPRGPGSGP 96 Query: 81 RRDNPSL 87 R P L Sbjct: 97 RPPQPQL 103 >gi|169162343 PREDICTED: hypothetical protein [Homo sapiens] Length = 189 Score = 27.7 bits (60), Expect = 2.4 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 12 ALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARA 53 A L LVQ PG+++R+ EA Q SPG R+ G +RA Sbjct: 150 APLALVQEAPGAAERAREARSEQPT----SPGTRHVGCCSRA 187 >gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo sapiens] Length = 201 Score = 27.7 bits (60), Expect = 2.4 Identities = 19/60 (31%), Positives = 21/60 (35%) Query: 17 VQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTA 76 V P + RSP P W G +GG R L L F G G G G A Sbjct: 80 VPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGA 139 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,866,096 Number of Sequences: 37866 Number of extensions: 225718 Number of successful extensions: 898 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 58 Number of HSP's that attempted gapping in prelim test: 844 Number of HSP's gapped (non-prelim): 109 length of query: 124 length of database: 18,247,518 effective HSP length: 89 effective length of query: 35 effective length of database: 14,877,444 effective search space: 520710540 effective search space used: 520710540 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.