Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 4507803

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507803 urocortin preproprotein [Homo sapiens]
         (124 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507803 urocortin preproprotein [Homo sapiens]                     243   3e-65
gi|4503041 corticotropin releasing hormone precursor [Homo sapiens]    52   1e-07
gi|148839382 ring finger protein 169 [Homo sapiens]                    33   0.056
gi|31377697 glycosyltransferase 25 domain containing 1 [Homo sap...    32   0.096
gi|15082240 urocortin 2 preproprotein [Homo sapiens]                   31   0.21 
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ...    30   0.47 
gi|170763515 DMRT-like family A1 [Homo sapiens]                        30   0.47 
gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo ...    29   0.81 
gi|239742785 PREDICTED: hypothetical protein XP_002342651 [Homo ...    29   0.81 
gi|81295809 pericentrin [Homo sapiens]                                 29   0.81 
gi|8924248 SRY-box 18 [Homo sapiens]                                   29   0.81 
gi|32880229 selenoprotein O [Homo sapiens]                             29   0.81 
gi|20270347 ankyrin repeat domain 54 [Homo sapiens]                    29   0.81 
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|167555110 kinesin family member C1 [Homo sapiens]                   29   1.1  
gi|45238845 urocortin 3 preproprotein [Homo sapiens]                   29   1.1  
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 29   1.1  
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]         28   1.4  
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]         28   1.4  
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]         28   1.4  
gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor ...    28   1.4  
gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor...    28   1.4  
gi|116256475 zinc finger protein 827 [Homo sapiens]                    28   1.4  
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ...    28   1.8  
gi|238908524 hypothetical protein LOC389333 [Homo sapiens]             28   2.4  
gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]            28   2.4  
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ...    28   2.4  

>gi|4507803 urocortin preproprotein [Homo sapiens]
          Length = 124

 Score =  243 bits (620), Expect = 3e-65
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE 60
           MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE
Sbjct: 1   MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE 60

Query: 61  RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD 120
           RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD
Sbjct: 61  RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD 120

Query: 121 SVGK 124
           SVGK
Sbjct: 121 SVGK 124


>gi|4503041 corticotropin releasing hormone precursor [Homo sapiens]
          Length = 196

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 58  LAERFPRRAGPGRLGLGTAGERPRR-DNPSLSIDLTFHLLRTLLELARTQSQRERAEQNR 116
           LAER  R A  G      A ER RR + P +S+DLTFHLLR +LE+AR +   ++A  NR
Sbjct: 132 LAERGARNALGGHQ---EAPERERRSEEPPISLDLTFHLLREVLEMARAEQLAQQAHSNR 188

Query: 117 IIFDSVGK 124
            + + +GK
Sbjct: 189 KLMEIIGK 196


>gi|148839382 ring finger protein 169 [Homo sapiens]
          Length = 708

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 11  AALLLLVQLCPGSSQRSPEAAGVQDPSLR-WSPG-----ARNQGGGARALLLLLAERF-P 63
           AAL     LC G +QR+ +AAG   P  R   PG     AR+ G     +L   A R  P
Sbjct: 79  AALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARRRARDDGQADSEVLGECARRSQP 138

Query: 64  RRAGPGR-LGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNR 116
            R  P R  G   AG RP ++  +   +  F + R  ++L++    RE  E  R
Sbjct: 139 ERCRPRRDGGAAAAGPRPEQEPRAAPAEPDF-IFRAPIKLSKPGELREEYESLR 191


>gi|31377697 glycosyltransferase 25 domain containing 1 [Homo
          sapiens]
          Length = 622

 Score = 32.3 bits (72), Expect = 0.096
 Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 2  RQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAER 61
          R+ G+  L   LLLL  L PG+    P  A    P  RWSP +  Q    R L+ LLA R
Sbjct: 9  RRRGQPLLALLLLLLAPLPPGA----PPGADAYFPEERWSPESPLQ--APRVLIALLA-R 61

Query: 62 FPRRAGPGRLGLGTAGERPR 81
              A P  LG       PR
Sbjct: 62 NAAHALPTTLGALERLRHPR 81


>gi|15082240 urocortin 2 preproprotein [Homo sapiens]
          Length = 112

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 87  LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVG 123
           LS+D+   LL+ LLE AR ++ RE+A  N  I   VG
Sbjct: 74  LSLDVPIGLLQILLEQARARAAREQATTNARILARVG 110


>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
            sapiens]
          Length = 2923

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 15   LLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRA 66
            + +QL  G    S E  G+Q  SLR  PG  N G    A L L A   P  A
Sbjct: 1664 ITLQLREGHVMLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHA 1715


>gi|170763515 DMRT-like family A1 [Homo sapiens]
          Length = 504

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 12/72 (16%)

Query: 24  SQRSPEAAGVQD---PSLRWSPGARNQGGGARALLLLLAERFPRRAGP---GRLGLGTAG 77
           +Q   EA G+Q      L W PG R  GGG R      AE      GP     LGLG   
Sbjct: 147 AQEESEARGLQRLLCSGLSWPPGGRASGGGGR------AENPQSTGGPAAGAALGLGALR 200

Query: 78  ERPRRDNPSLSI 89
           +      P+  +
Sbjct: 201 QASGSATPAFEV 212


>gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo
           sapiens]
          Length = 121

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 21  PG-SSQRSPEAAGV-QDPSLRWSPGARNQGGGARALLLLLA--ERFPRRAGPGRLGLGTA 76
           PG S++RS       + PS       R   G A AL    +   R PRR  P   G G+ 
Sbjct: 34  PGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRPSPLGAGSGSR 93

Query: 77  GERPRRDNPSLSIDLTFH 94
            E PRR  P+L+  L+ H
Sbjct: 94  DECPRRRCPALARRLSDH 111


>gi|239742785 PREDICTED: hypothetical protein XP_002342651 [Homo
           sapiens]
          Length = 121

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 21  PG-SSQRSPEAAGV-QDPSLRWSPGARNQGGGARALLLLLA--ERFPRRAGPGRLGLGTA 76
           PG S++RS       + PS       R   G A AL    +   R PRR  P   G G+ 
Sbjct: 34  PGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRPSPLGAGSGSR 93

Query: 77  GERPRRDNPSLSIDLTFH 94
            E PRR  P+L+  L+ H
Sbjct: 94  DECPRRRCPALARRLSDH 111


>gi|81295809 pericentrin [Homo sapiens]
          Length = 3336

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 2    RQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAER 61
            R+A  +A L A+LL +     + ++ P AAG   P L+W    R Q       L +L +R
Sbjct: 1883 RKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQW---LRAQCARLSRQLQVLHQR 1939

Query: 62   FPR 64
            F R
Sbjct: 1940 FLR 1942


>gi|8924248 SRY-box 18 [Homo sapiens]
          Length = 384

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 19/77 (24%)

Query: 25 QRSPEAAGVQD--PSLR---WSPG------ARNQGGGARALLLLLAERFP--------RR 65
          QRSP   G QD  P+ R   W+PG       R    G  AL    A   P        R 
Sbjct: 2  QRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRS 61

Query: 66 AGPGRLGLGTAGERPRR 82
            PGR GL  AG   R+
Sbjct: 62 PEPGRYGLSPAGRGERQ 78


>gi|32880229 selenoprotein O [Homo sapiens]
          Length = 669

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2  RQAGRAALLAALLLLVQLC-PGSSQRSPEAAGVQDPSLRWSPGARNQGGGARAL 54
          R A  A+L AA LL +  C P  + RS  +    +P+ RW  G R      RAL
Sbjct: 5  RAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRAL 58


>gi|20270347 ankyrin repeat domain 54 [Homo sapiens]
          Length = 300

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 20/65 (30%), Positives = 26/65 (40%)

Query: 49  GGARALLLLLAERFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQ 108
           GGAR   L  A R P      +L +   G     +   L +    H+LR  LE      Q
Sbjct: 198 GGARVDALDRAGRTPLHLAKSKLNILQEGHAQCLEAVRLEVKQIIHMLREYLERLGQHEQ 257

Query: 109 RERAE 113
           RER +
Sbjct: 258 RERLD 262


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 8   ALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAG 67
           A  AA    V+   G + R P A G   PS R  PGAR +    RA + L     P RA 
Sbjct: 906 AAAAAAAQGVRAAQGRAHR-PGAQGA--PSHRHRPGARGRRSRRRAAVALAGGAHPARAA 962

Query: 68  PGR 70
            GR
Sbjct: 963 LGR 965


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 8   ALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAG 67
           A  AA    V+   G + R P A G   PS R  PGAR +    RA + L     P RA 
Sbjct: 906 AAAAAAAQGVRAAQGRAHR-PGAQGA--PSHRHRPGARGRRSRRRAAVALAGGAHPARAA 962

Query: 68  PGR 70
            GR
Sbjct: 963 LGR 965


>gi|167555110 kinesin family member C1 [Homo sapiens]
          Length = 673

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 64  RRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIF 119
           RRAGPG   L     R    +    +D   HL R    +ART +Q ER+ ++  +F
Sbjct: 488 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVART-AQNERSSRSHSVF 542


>gi|45238845 urocortin 3 preproprotein [Homo sapiens]
          Length = 161

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 43  GARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLEL 102
           GAR   GGAR        R+  +A P         + P R   +LS+D+  +++  L  +
Sbjct: 85  GAR---GGARGTRY----RYVSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIMNLLFNI 137

Query: 103 ARTQSQRERAEQNRIIFDSVGK 124
           A+ ++ R +A  N  +   +G+
Sbjct: 138 AKAKNLRAQAAANAHLMAQIGR 159


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 10  LAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56
           L  LL  ++  P +  R P  +GV +  L+ +PGA  +G G    LL
Sbjct: 269 LQGLLHCLKELPEAQDRHPSPSGVGNRRLQENPGAWKRGSGGPGYLL 315


>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
          Length = 1072

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 19  LCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGE 78
           L P ++ R     G++   L   PG    GG +R      +  +P   G G  G G+ G 
Sbjct: 163 LLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGS 222

Query: 79  RPRRD 83
           + R D
Sbjct: 223 KRRLD 227


>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
          Length = 1200

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 19  LCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGE 78
           L P ++ R     G++   L   PG    GG +R      +  +P   G G  G G+ G 
Sbjct: 163 LLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGS 222

Query: 79  RPRRD 83
           + R D
Sbjct: 223 KRRLD 227


>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
          Length = 1069

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 19  LCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGE 78
           L P ++ R     G++   L   PG    GG +R      +  +P   G G  G G+ G 
Sbjct: 163 LLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGS 222

Query: 79  RPRRD 83
           + R D
Sbjct: 223 KRRLD 227


>gi|4885065 amyloid precursor-like protein 1 isoform 2 precursor
           [Homo sapiens]
          Length = 650

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 20  CPGSSQRSPEAAGVQDPSLR-WSPGARNQG 48
           CP      P    V DPS R W PG+R +G
Sbjct: 210 CPPPGTPDPSGTAVGDPSTRSWPPGSRVEG 239


>gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor
           [Homo sapiens]
          Length = 651

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 20  CPGSSQRSPEAAGVQDPSLR-WSPGARNQG 48
           CP      P    V DPS R W PG+R +G
Sbjct: 210 CPPPGTPDPSGTAVGDPSTRSWPPGSRVEG 239


>gi|116256475 zinc finger protein 827 [Homo sapiens]
          Length = 1077

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 33  VQDPSLRWSP--------GARNQGGGARALLLLLAERFPRRAGPGRLGLG--TAGERPRR 82
           + DP ++ SP        G + +GGG   +  ++    P R   G  G+      E P+ 
Sbjct: 469 IPDPDVKGSPHLSDSACLGQQREGGGTELVGTMMTSNTPERTSQGGAGVSPLLVKEEPKE 528

Query: 83  DN 84
           DN
Sbjct: 529 DN 530


>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 18  QLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56
           +LC G S R  + A    PS  W+PG R  G G    +L
Sbjct: 310 RLC-GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPML 347


>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 18  QLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56
           +LC G S R  + A    PS  W+PG R  G G    +L
Sbjct: 310 RLC-GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPML 347


>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
           sapiens]
          Length = 461

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 18  QLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLL 56
           +LC G S R  + A    PS  W+PG R  G G    +L
Sbjct: 310 RLC-GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPML 347


>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
          Length = 1015

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 21  PGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERP 80
           PGS +        + P+  W   A  +G GA+  L + A+   +R GPG       G  P
Sbjct: 38  PGSPEPPDVGPDAKGPA-NWPWVAPGRGAGAQPRLSVSAQNSRQRHGPGSGFPRGPGSGP 96

Query: 81  RRDNPSL 87
           R   P L
Sbjct: 97  RPPQPQL 103


>gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 189

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 12  ALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARA 53
           A L LVQ  PG+++R+ EA   Q      SPG R+ G  +RA
Sbjct: 150 APLALVQEAPGAAERAREARSEQPT----SPGTRHVGCCSRA 187


>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
           sapiens]
          Length = 201

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 19/60 (31%), Positives = 21/60 (35%)

Query: 17  VQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTA 76
           V   P  + RSP       P   W  G   +GG  R L   L   F    G G  G G A
Sbjct: 80  VPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGA 139


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,866,096
Number of Sequences: 37866
Number of extensions: 225718
Number of successful extensions: 898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 109
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press