Guide to the Human Genome
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Name: LOC100288414 Sequence: fasta or formatted (121aa) NCBI GI: 239742785
Description:

PREDICTED: hypothetical protein XP_002342651

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         15           3
 C cysteine            1.7          2           1
 D aspartate           1.7          2           1
 E glutamate           1.7          2           1
 F phenylalanine       1.7          2           1
 G glycine            11.6         14           2
 H histidine           5.0          6           1
 I isoleucine          1.7          2           1
 K lysine              0.0          0           0
 L leucine             5.0          6           1
 M methionine          1.7          2           1
 N asparagine          3.3          4           1
 P proline            10.7         13           2
 Q glutamine           1.7          2           1
 R arginine           20.7         25           3
 S serine             10.7         13           2
 T threonine           4.1          5           1
 V valine              1.7          2           1
 W tryptophan          1.7          2           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342651 
LOC100290140          1.000   PREDICTED: hypothetical protein XP_002346786 
LOC100291579          0.556   PREDICTED: hypothetical protein XP_002345911 
SRRM1                 0.043   serine/arginine repetitive matrix 1 
ADAMTS16              0.043   ADAM metallopeptidase with thrombospondin type 1 mo...
LOC100130982          0.043   PREDICTED: hypothetical protein 
LOC100130982          0.043   PREDICTED: hypothetical protein 
LOC100130982          0.043   PREDICTED: hypothetical protein 
LOC100293849          0.039   PREDICTED: hypothetical protein 
LOC100289957          0.039   PREDICTED: hypothetical protein XP_002346538 
LOC100287670          0.039   PREDICTED: hypothetical protein XP_002342378 
BBC3                  0.039   BCL2 binding component 3 isoform 1 
SFI1                  0.039   spindle assembly associated Sfi1 homolog isoform a [...
SFI1                  0.039   spindle assembly associated Sfi1 homolog isoform b [...
LOC100292845          0.034   PREDICTED: hypothetical protein 
LOC100289230          0.034   PREDICTED: hypothetical protein XP_002342600 
MAST3                 0.034   microtubule associated serine/threonine kinase 3 [H...
LOC100293776          0.034   PREDICTED: hypothetical protein 
ANKRD36               0.034   PREDICTED: ankyrin repeat domain 36 
LOC100288658          0.034   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.034   PREDICTED: hypothetical protein 
RFWD2                 0.034   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.034   ring finger and WD repeat domain 2 isoform d24 [Homo...
TRIML1                0.034   tripartite motif family-like 1 
SRRM2                 0.034   splicing coactivator subunit SRm300 
LOC100290372          0.030   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.030   PREDICTED: hypothetical protein XP_002342652 
LOC100292716          0.030   PREDICTED: similar to pseudoautosomal GTP-binding p...
KCNH2                 0.030   voltage-gated potassium channel, subfamily H, member...
OCA2                  0.030   oculocutaneous albinism II 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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