Search of human proteins with 4507595

Search of human proteins with 4507595

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
         (317 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507595 tumor necrosis factor ligand superfamily, member 11 i...   653   0.0  
gi|14790152 tumor necrosis factor ligand superfamily, member 11 ...   502   e-142
gi|4507593 tumor necrosis factor (ligand) superfamily, member 10...    93   4e-19
gi|4557329 fas ligand [Homo sapiens]                                   57   3e-08
gi|4557433 CD40 ligand [Homo sapiens]                                  52   7e-07
gi|25952111 tumor necrosis factor alpha [Homo sapiens]                 48   1e-05
gi|25952147 tumor necrosis factor ligand superfamily, member 14 ...    48   1e-05
gi|25952144 tumor necrosis factor ligand superfamily, member 14 ...    47   3e-05
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]                   45   1e-04
gi|6806893 lymphotoxin alpha precursor [Homo sapiens]                  39   0.008
gi|229092381 lymphotoxin alpha precursor [Homo sapiens]                39   0.008
gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo ...    36   0.039
gi|171543895 ataxin 2 [Homo sapiens]                                   34   0.15 
gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase...    33   0.25 
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s...    33   0.33 
gi|147902746 MEX3A protein [Homo sapiens]                              33   0.33 
gi|154689780 son of sevenless homolog 2 [Homo sapiens]                 32   0.57 
gi|157649073 adenylyl cyclase-associated protein [Homo sapiens]        32   0.57 
gi|5453595 adenylyl cyclase-associated protein [Homo sapiens]          32   0.57 
gi|5453936 POU class 3 homeobox 3 [Homo sapiens]                       32   0.57 
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]     32   0.57 
gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens]     32   0.74 
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]         32   0.97 
gi|4507691 transformation/transcription domain-associated protei...    32   0.97 
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap...    32   0.97 
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi...    32   0.97 
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi...    32   0.97 
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi...    32   0.97 
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi...    32   0.97 
gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo...    31   1.3  

>gi|4507595 tumor necrosis factor ligand superfamily, member 11
           isoform 1 [Homo sapiens]
          Length = 317

 Score =  653 bits (1685), Expect = 0.0
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MRRASRDYTKYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQV 60
           MRRASRDYTKYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQV
Sbjct: 1   MRRASRDYTKYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQV 60

Query: 61  VCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIK 120
           VCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIK
Sbjct: 61  VCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIK 120

Query: 121 QAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSH 180
           QAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSH
Sbjct: 121 QAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSH 180

Query: 181 KVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMV 240
           KVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMV
Sbjct: 181 KVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMV 240

Query: 241 YVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLD 300
           YVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLD
Sbjct: 241 YVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLD 300

Query: 301 PDQDATYFGAFKVRDID 317
           PDQDATYFGAFKVRDID
Sbjct: 301 PDQDATYFGAFKVRDID 317


>gi|14790152 tumor necrosis factor ligand superfamily, member 11
           isoform 2 [Homo sapiens]
          Length = 244

 Score =  502 bits (1292), Expect = e-142
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 74  MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH 133
           MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH
Sbjct: 1   MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH 60

Query: 134 IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW 193
           IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW
Sbjct: 61  IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW 120

Query: 194 AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH 253
           AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH
Sbjct: 121 AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH 180

Query: 254 TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 313
           TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV
Sbjct: 181 TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240

Query: 314 RDID 317
           RDID
Sbjct: 241 RDID 244


>gi|4507593 tumor necrosis factor (ligand) superfamily, member 10
           [Homo sapiens]
          Length = 281

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 25/284 (8%)

Query: 42  PAASRSMFVALLGLGLGQVVCSVALFFYFRAQMDP--NRISEDGTHCIYRILRLHENADF 99
           P+  ++  + ++   L Q +C    + YF  ++    ++ S+ G  C  +          
Sbjct: 10  PSLGQTCVLIVIFTVLLQSLCVAVTYVYFTNELKQMQDKYSKSGIACFLKE--------- 60

Query: 100 QDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGSWLDLAKRSK 159
            D+  +  D + +   C ++K   +  V+K +           ++   + S L    R +
Sbjct: 61  DDSYWDPNDEESMNSPCWQVKWQLRQLVRKMILRTSEETISTVQEKQQNISPL---VRER 117

Query: 160 LEAQPFAHLT-----INATDIPSGSHKVSL----SSWYHDR-GWAKISNMTFSNGKLIVN 209
              +  AH+T      N    P+  ++ +L    +SW   R G + +SN+   NG+L+++
Sbjct: 118 GPQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIH 177

Query: 210 QDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSE 269
           + GFYY+Y+   FR  E   +      Q++ Y+ K +   P    LMK      WS ++E
Sbjct: 178 EKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYT-SYPDPILLMKSARNSCWSKDAE 236

Query: 270 FHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 313
           +  YSI  GG F+L+  + I + V+N  L+D D +A++FGAF V
Sbjct: 237 YGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAFLV 280


>gi|4557329 fas ligand [Homo sapiens]
          Length = 281

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 159 KLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYA 218
           K E +  AHLT       S S  + L  W    G   +S + +  G L++N+ G Y++Y+
Sbjct: 140 KKELRKVAHLTGK-----SNSRSMPLE-WEDTYGIVLLSGVKYKKGGLVINETGLYFVYS 193

Query: 219 NICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVG 278
            + FR    +       L L   V   + K P    +M+G    Y +   +    S  +G
Sbjct: 194 KVYFRGQSCNN------LPLSHKVYMRNSKYPQDLVMMEGKMMSYCT-TGQMWARSSYLG 246

Query: 279 GFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 313
             F L S + + + VS  SL++ ++  T+FG +K+
Sbjct: 247 AVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL 281


>gi|4557433 CD40 ligand [Homo sapiens]
          Length = 261

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)

Query: 93  LHENADFQDTT--LESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGS 150
           LHE+  F  T     + +  L   +C  IK  F+G V+  +        +  E+   + S
Sbjct: 59  LHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIM--------LNKEETKKENS 110

Query: 151 WLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN--MTFSNGK-LI 207
           +    ++     Q  AH+   A+     S   S+  W  ++G+  +SN  +T  NGK L 
Sbjct: 111 FE--MQKGDQNPQIAAHVISEAS-----SKTTSVLQWA-EKGYYTMSNNLVTLENGKQLT 162

Query: 208 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPS--SHTLMKGGSTKYWS 265
           V + G YY+YA + F  +  +   A        ++    +K P      L++  +T   S
Sbjct: 163 VKRQGLYYIYAQVTFCSNREASSQAP-------FIASLCLKSPGRFERILLRAANTH--S 213

Query: 266 GNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 313
                   SI++GG F+L+ G  + + V++PS +      T FG  K+
Sbjct: 214 SAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261


>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
          Length = 233

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 24/157 (15%)

Query: 163 QPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN-MTFSNGKLIVNQDGFYYLYANIC 221
           +P AH+  N    P    ++    W + R  A ++N +   + +L+V  +G Y +Y+ + 
Sbjct: 87  KPVAHVVAN----PQAEGQLQ---WLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVL 139

Query: 222 FRHH--ETSGDLATEYLQLMV--YVTK----TSIKIPSSHTLMKGGSTKYWSGNSEFHFY 273
           F+     ++  L T  +  +   Y TK    ++IK P      +G   K W       + 
Sbjct: 140 FKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPW-------YE 192

Query: 274 SINVGGFFKLRSGEEISIEVSNPSLLD-PDQDATYFG 309
            I +GG F+L  G+ +S E++ P  LD  +    YFG
Sbjct: 193 PIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFG 229


>gi|25952147 tumor necrosis factor ligand superfamily, member 14
           isoform 2 [Homo sapiens]
          Length = 204

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 149 GSWLDLAK-RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLI 207
           GSW  L + R   E  P AHLT  A    +GS    L  W    G A +  +++ +G L+
Sbjct: 42  GSWEQLIQERRSHEVNPAAHLT-GANSSLTGSGGPLL--WETQLGLAFLRGLSYHDGALV 98

Query: 208 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGN 267
           V + G+YY+Y+ +          LA+     +    K + + P    L+    +      
Sbjct: 99  VTKAGYYYIYSKVQLGGVGCPLGLASTITHGLY---KRTPRYPEELELLVSQQSPCGRAT 155

Query: 268 SEFHFY--SINVGGFFKLRSGEEISIEVSNPSLLD-PDQDATYFGAFKV 313
           S    +  S  +GG   L +GEE+ + V +  L+   D   +YFGAF V
Sbjct: 156 SSSRVWWDSSFLGGVVHLEAGEEVVVRVLDERLVRLRDGTRSYFGAFMV 204


>gi|25952144 tumor necrosis factor ligand superfamily, member 14
           isoform 1 precursor [Homo sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 149 GSWLDLAK-RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLI 207
           GSW  L + R   E  P AHLT  A    +GS    L  W    G A +  +++ +G L+
Sbjct: 78  GSWEQLIQERRSHEVNPAAHLT-GANSSLTGSGGPLL--WETQLGLAFLRGLSYHDGALV 134

Query: 208 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGN 267
           V + G+YY+Y+ +          LA+     +    K + + P    L+    +      
Sbjct: 135 VTKAGYYYIYSKVQLGGVGCPLGLASTITHGLY---KRTPRYPEELELLVSQQSPCGRAT 191

Query: 268 SEFHFY--SINVGGFFKLRSGEEISIEVSNPSLLD-PDQDATYFGAFKV 313
           S    +  S  +GG   L +GE++ + V +  L+   D   +YFGAF V
Sbjct: 192 SSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFMV 240


>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
          Length = 244

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 197 SNMTFSNGK-LIVNQDGFYYLYANICFRHHETSGDLATE----YLQLMVYVTKTSIKIPS 251
           S   FS+ + L + QDG YYLY  + +R     G    +     L+  +Y    +    +
Sbjct: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGT 174

Query: 252 SHTLMKGGST-------KYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQD 304
              L++G  T           G     + S+  GG  +LR GE + + +S+P ++D  + 
Sbjct: 175 PELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARG 234

Query: 305 ATYFGAFKV 313
            T+FGA  V
Sbjct: 235 KTFFGAVMV 243


>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)

Query: 200 TFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGG 259
           + SN  L+V   G Y++Y+ + F     S    +  L L   V   S + P  H  +   
Sbjct: 93  SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYP-FHVPLLSS 151

Query: 260 STKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAF 311
               + G  E   +S+  G  F+L  G+++S        L       +FGAF
Sbjct: 152 QKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAF 203


>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)

Query: 200 TFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGG 259
           + SN  L+V   G Y++Y+ + F     S    +  L L   V   S + P  H  +   
Sbjct: 93  SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYP-FHVPLLSS 151

Query: 260 STKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAF 311
               + G  E   +S+  G  F+L  G+++S        L       +FGAF
Sbjct: 152 QKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAF 203


>gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo
           sapiens]
          Length = 1281

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 89  RILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVD 148
           R+L L  N       ++   T  + +S +++ Q   G V +ELQ + GS++     A+ D
Sbjct: 774 RLLELGRNHHASPNLMDESKTFSLTESLQQLSQQLNGVVSEELQKLRGSRYQEVTVAL-D 832

Query: 149 GSWLDLAKRSK 159
            S++ +++R+K
Sbjct: 833 SSYITISRRNK 843


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 15/29 (51%), Positives = 16/29 (55%)

Query: 19 GGGPGAPHEGPLHAPPPPAPHQPPAASRS 47
          GGG  AP   P  APPPP P  PP+   S
Sbjct: 41 GGGGAAPGPYPSAAPPPPGPGPPPSRQSS 69


>gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase 2
           [Homo sapiens]
          Length = 883

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 23  GAPHEGPLHAPPPPAPHQPPAASRS-----MFVALLGLGLGQVVCSV--ALFFYFRAQMD 75
           GA   GP   P PP P +PP  +R+     +FV      LGQ + ++  +  F +  ++ 
Sbjct: 59  GAAGPGPARPPVPPRPPRPPETARTEPVVLVFVESAYSQLGQEIVAILESSRFRYSTELA 118

Query: 76  PNR----ISEDGTHCIYRILRLHEN 96
           P R       D TH  Y +L ++EN
Sbjct: 119 PGRGDMPTLTDNTHGRY-VLVIYEN 142


>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
           sapiens]
          Length = 564

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 24  APHEGPLHAPPPPAPHQPP 42
           +P   P++ PPPPAPH PP
Sbjct: 505 SPPPAPIYTPPPPAPHCPP 523


>gi|147902746 MEX3A protein [Homo sapiens]
          Length = 520

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 14 GSEEMGGGPGAPHEGPLHAPPPPAPHQPPAA 44
          G +  GGG GAP +    APP PAP  PPAA
Sbjct: 59 GEDGGGGGGGAPAQPA--APPQPAPPPPPAA 87


>gi|154689780 son of sevenless homolog 2 [Homo sapiens]
          Length = 1332

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 22   PGAPHEGPLHAPPPPAPHQP 41
            P    +GPLH+PPPP P  P
Sbjct: 1192 PTGAFDGPLHSPPPPPPRDP 1211


>gi|157649073 adenylyl cyclase-associated protein [Homo sapiens]
          Length = 475

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 15  SEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRS 47
           ++E+ G P  P  G    PPPP P  PP ++ S
Sbjct: 214 AKELSGLPSGPSAGSGPPPPPPGPPPPPVSTSS 246


>gi|5453595 adenylyl cyclase-associated protein [Homo sapiens]
          Length = 475

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 15  SEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRS 47
           ++E+ G P  P  G    PPPP P  PP ++ S
Sbjct: 214 AKELSGLPSGPSAGSGPPPPPPGPPPPPVSTSS 246


>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
          Length = 500

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 14  GSEEMGGGPGAPHEGPLH-APPPPAPHQ 40
           G +++  G    H GP H  PPPP PHQ
Sbjct: 154 GRDDLHAGTALHHRGPPHLGPPPPPPHQ 181


>gi|165905613 ring finger and KH domain containing 1 [Homo
          sapiens]
          Length = 651

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 16 EEMGGGPGAPHEGPLHAP----PPPAPHQPPAASRSMFVALLGLGLG 58
          E+ G GP  P EG   A     PPP P    AA R     L  LGLG
Sbjct: 26 EDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLALDQLSALGLG 72


>gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens]
          Length = 1162

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 16  EEMGGGPGAP--HEGPLHAPPPPAPHQPPAASRSMFVA----LLGLGLGQVVCSVALFFY 69
           EE G    AP   + PL   PPPAPH+P     S+F A       L L Q +CS  L  Y
Sbjct: 743 EEKGAFGDAPATEQPPL---PPPAPHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIY 799

Query: 70  FRAQ 73
            +AQ
Sbjct: 800 RQAQ 803


>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
          Length = 345

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 5/29 (17%)

Query: 18  MGGGPGAPHEG---PLHAPPPPAPHQPPA 43
           +G   GA H G   PLH PPPP P  PPA
Sbjct: 145 LGAAKGALHPGCFAPLHPPPPPPP--PPA 171


>gi|4507691 transformation/transcription domain-associated protein
           [Homo sapiens]
          Length = 3830

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 12  LRGSEEMGGGPG-APHEGPLHAPPPPAPHQPPA 43
           L G       PG AP   P+ APPPP P  PPA
Sbjct: 484 LPGVPTAPAAPGPAPSPAPVPAPPPPPPPPPPA 516


>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
          Length = 1932

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 22   PGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISE 81
            P  P   P+ APPPP P  PP A        LG      + ++ L ++F+     N +SE
Sbjct: 1399 PAVPAPAPVAAPPPPPP-PPPGAH---LYEELG---DSSMHNLFLLYHFQQSRGNNSVSE 1451

Query: 82   DGTH 85
            D  H
Sbjct: 1452 DRKH 1455


>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
          Length = 1935

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 22   PGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISE 81
            P  P   P+ APPPP P  PP A        LG      + ++ L ++F+     N +SE
Sbjct: 1402 PAVPAPAPVAAPPPPPP-PPPGAH---LYEELG---DSSMHNLFLLYHFQQSRGNNSVSE 1454

Query: 82   DGTH 85
            D  H
Sbjct: 1455 DRKH 1458


>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
          Length = 1886

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 22   PGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISE 81
            P  P   P+ APPPP P  PP A        LG      + ++ L ++F+     N +SE
Sbjct: 1353 PAVPAPAPVAAPPPPPP-PPPGAH---LYEELG---DSSMHNLFLLYHFQQSRGNNSVSE 1405

Query: 82   DGTH 85
            D  H
Sbjct: 1406 DRKH 1409


>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
          Length = 1957

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 22   PGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISE 81
            P  P   P+ APPPP P  PP A        LG      + ++ L ++F+     N +SE
Sbjct: 1424 PAVPAPAPVAAPPPPPP-PPPGAH---LYEELG---DSSMHNLFLLYHFQQSRGNNSVSE 1476

Query: 82   DGTH 85
            D  H
Sbjct: 1477 DRKH 1480


>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
          Length = 1962

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 22   PGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISE 81
            P  P   P+ APPPP P  PP A        LG      + ++ L ++F+     N +SE
Sbjct: 1429 PAVPAPAPVAAPPPPPP-PPPGAH---LYEELG---DSSMHNLFLLYHFQQSRGNNSVSE 1481

Query: 82   DGTH 85
            D  H
Sbjct: 1482 DRKH 1485


>gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo
           sapiens]
          Length = 312

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 28/105 (26%)

Query: 14  GSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFYFRAQ 73
           G    GG PG P      A PPP PH PP   +      +    G+ V S          
Sbjct: 8   GEAAQGGEPGQP------AQPPPQPHPPP--PQQQHKEEMAAEAGEAVAS---------P 50

Query: 74  MDPNRISEDG-THCIYRILR----------LHENADFQDTTLESQ 107
           MD   +S D  ++ +YR  R          LHE  ++    +E Q
Sbjct: 51  MDDGFVSLDSPSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQ 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,387,865
Number of Sequences: 37866
Number of extensions: 646860
Number of successful extensions: 7015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 6393
Number of HSP's gapped (non-prelim): 619
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.