Guide to the Human Genome
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Name: LTA Sequence: fasta or formatted (205aa) NCBI GI: 6806893
Description:

lymphotoxin alpha precursor

Referenced in:

Lectin Families
TNF and Related Signals

Other entries for this name:
alt mRNA [205aa] lymphotoxin alpha precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         16           2
 C cysteine            0.5          1           1
 D aspartate           2.4          5           1
 E glutamate           1.5          3           1
 F phenylalanine       5.4         11           2
 G glycine             7.3         15           1
 H histidine           5.4         11           1
 I isoleucine          1.5          3           1
 K lysine              2.9          6           1
 L leucine            17.1         35           4
 M methionine          2.0          4           1
 N asparagine          2.0          4           2
 P proline             8.8         18           2
 Q glutamine           6.3         13           1
 R arginine            2.4          5           1
 S serine             10.2         21           2
 T threonine           6.3         13           2
 V valine              5.9         12           2
 W tryptophan          1.0          2           1
 Y tyrosine            3.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphotoxin alpha precursor 
LTA                   1.000   lymphotoxin alpha precursor 
TNF                   0.153   tumor necrosis factor alpha 
FASLG                 0.125   fas ligand 
TNFSF15               0.097   tumor necrosis factor (ligand) superfamily, member 1...
LTB                   0.079   lymphotoxin-beta isoform a 
TNFSF10               0.054   tumor necrosis factor (ligand) superfamily, member 10...
TNFSF14               0.054   tumor necrosis factor ligand superfamily, member 14 ...
TNFSF14               0.051   tumor necrosis factor ligand superfamily, member 14 ...
TNFSF11               0.036   tumor necrosis factor ligand superfamily, member 11 ...
TNFSF11               0.036   tumor necrosis factor ligand superfamily, member 11 i...
TNFSF13B              0.018   tumor necrosis factor superfamily, member 13b isoform...
TNFSF13B              0.018   tumor necrosis factor superfamily, member 13b isofo...
ADAM33                0.018   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.018   ADAM metallopeptidase domain 33 isoform beta preprop...
EHMT2                 0.018   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.018   euchromatic histone-lysine N-methyltransferase 2 is...
TNFSF13               0.015   tumor necrosis factor ligand superfamily, member 13 i...
TNFSF13               0.015   tumor necrosis factor ligand superfamily, member 13 ...
TNFSF12-TNFSF13       0.015   TNFSF12-TNFSF13 protein 
GPR124                0.013   G protein-coupled receptor 124 
TIMP4                 0.010   tissue inhibitor of metalloproteinase 4 precursor [Ho...
ACCN3                 0.008   amiloride-sensitive cation channel 3 isoform b 
CD40LG                0.008   CD40 ligand 
NRD1                  0.008   nardilysin isoform a 
ANKHD1                0.008   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.008   ANKHD1-EIF4EBP3 protein 
AMBN                  0.008   ameloblastin precursor 
ZFHX3                 0.008   AT-binding transcription factor 1 
COL9A3                0.008   alpha 3 type IX collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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