LTA 34758

Name: LTA	Sequence: fasta or formatted (205aa)		NCBI GI: 6806893
Description: lymphotoxin alpha precursor		Referenced in: Lectin Families TNF and Related Signals
Other entries for this name: alt mRNA [205aa] lymphotoxin alpha precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 16 2 C cysteine 0.5 1 1 D aspartate 2.4 5 1 E glutamate 1.5 3 1 F phenylalanine 5.4 11 2 G glycine 7.3 15 1 H histidine 5.4 11 1 I isoleucine 1.5 3 1 K lysine 2.9 6 1 L leucine 17.1 35 4 M methionine 2.0 4 1 N asparagine 2.0 4 2 P proline 8.8 18 2 Q glutamine 6.3 13 1 R arginine 2.4 5 1 S serine 10.2 21 2 T threonine 6.3 13 2 V valine 5.9 12 2 W tryptophan 1.0 2 1 Y tyrosine 3.4 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lymphotoxin alpha precursor LTA 1.000 lymphotoxin alpha precursor TNF 0.153 tumor necrosis factor alpha FASLG 0.125 fas ligand TNFSF15 0.097 tumor necrosis factor (ligand) superfamily, member 1... LTB 0.079 lymphotoxin-beta isoform a TNFSF10 0.054 tumor necrosis factor (ligand) superfamily, member 10... TNFSF14 0.054 tumor necrosis factor ligand superfamily, member 14 ... TNFSF14 0.051 tumor necrosis factor ligand superfamily, member 14 ... TNFSF11 0.036 tumor necrosis factor ligand superfamily, member 11 ... TNFSF11 0.036 tumor necrosis factor ligand superfamily, member 11 i... TNFSF13B 0.018 tumor necrosis factor superfamily, member 13b isoform... TNFSF13B 0.018 tumor necrosis factor superfamily, member 13b isofo... ADAM33 0.018 ADAM metallopeptidase domain 33 isoform alpha prepro... ADAM33 0.018 ADAM metallopeptidase domain 33 isoform beta preprop... EHMT2 0.018 euchromatic histone-lysine N-methyltransferase 2 is... EHMT2 0.018 euchromatic histone-lysine N-methyltransferase 2 is... TNFSF13 0.015 tumor necrosis factor ligand superfamily, member 13 i... TNFSF13 0.015 tumor necrosis factor ligand superfamily, member 13 ... TNFSF12-TNFSF13 0.015 TNFSF12-TNFSF13 protein GPR124 0.013 G protein-coupled receptor 124 TIMP4 0.010 tissue inhibitor of metalloproteinase 4 precursor [Ho... ACCN3 0.008 amiloride-sensitive cation channel 3 isoform b CD40LG 0.008 CD40 ligand NRD1 0.008 nardilysin isoform a ANKHD1 0.008 ankyrin repeat and KH domain containing 1 isoform 1 ... ANKHD1-EIF4EBP3 0.008 ANKHD1-EIF4EBP3 protein AMBN 0.008 ameloblastin precursor ZFHX3 0.008 AT-binding transcription factor 1 COL9A3 0.008 alpha 3 type IX collagen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.