LTB 28964

Name: LTB	Sequence: fasta or formatted (244aa)		NCBI GI: 4505035
Description: lymphotoxin-beta isoform a		Referenced in: TNF and Related Signals
Other entries for this name: alt prot [77aa] lymphotoxin-beta isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 23 2 C cysteine 0.4 1 1 D aspartate 3.7 9 1 E glutamate 5.3 13 3 F phenylalanine 2.9 7 2 G glycine 16.8 41 3 H histidine 0.8 2 1 I isoleucine 1.2 3 1 K lysine 1.6 4 1 L leucine 14.8 36 3 M methionine 1.2 3 1 N asparagine 0.4 1 1 P proline 7.4 18 2 Q glutamine 5.7 14 2 R arginine 5.7 14 2 S serine 4.1 10 2 T threonine 6.6 16 2 V valine 7.4 18 1 W tryptophan 0.8 2 1 Y tyrosine 3.7 9 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lymphotoxin-beta isoform a LTB 0.170 lymphotoxin-beta isoform b TNF 0.084 tumor necrosis factor alpha TNFSF14 0.075 tumor necrosis factor ligand superfamily, member 14 ... TNFSF14 0.069 tumor necrosis factor ligand superfamily, member 14 ... LTA 0.067 lymphotoxin alpha precursor LTA 0.067 lymphotoxin alpha precursor FASLG 0.054 fas ligand TNFSF15 0.049 tumor necrosis factor (ligand) superfamily, member 1... TNFSF11 0.043 tumor necrosis factor ligand superfamily, member 11 ... TNFSF11 0.043 tumor necrosis factor ligand superfamily, member 11 i... CD40LG 0.036 CD40 ligand TNFSF10 0.026 tumor necrosis factor (ligand) superfamily, member 10... LOC100290692 0.017 PREDICTED: hypothetical protein XP_002348066 LOC100287031 0.017 PREDICTED: hypothetical protein XP_002343746 FIGNL2 0.015 fidgetin-like 2 TLX1 0.015 T-cell leukemia homeobox 1 MMRN2 0.013 multimerin 2 precursor SHROOM2 0.013 apical protein of Xenopus-like CT47B1 0.013 cancer/testis antigen family 147, member B1 SALL4 0.011 sal-like 4 ALMS1 0.011 Alstrom syndrome 1 LOC100292401 0.011 PREDICTED: hypothetical protein LOC729008 0.011 PREDICTED: similar to Apoptosis-related protein 2 [... LOC644354 0.011 PREDICTED: similar to Apoptosis-related protein 2 [... LOC100294339 0.011 PREDICTED: similar to Apoptosis-related protein 2 [... LOC100294332 0.011 PREDICTED: similar to Apoptosis-related protein 2 [... CT47A1 0.009 cancer/testis antigen family 47, member A1 CT47A2 0.009 cancer/testis antigen family 47, member A2 CT47A3 0.009 cancer/testis antigen family 47, member A3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.