TNF 24179

Name: TNF	Sequence: fasta or formatted (233aa)		NCBI GI: 25952111
Description: tumor necrosis factor alpha		Referenced in: Macrophages and Monocytes TNF and Related Signals
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.2 19 1 C cysteine 1.7 4 1 D aspartate 3.0 7 1 E glutamate 6.9 16 2 F phenylalanine 4.3 10 1 G glycine 7.3 17 2 H histidine 1.7 4 1 I isoleucine 5.2 12 2 K lysine 3.4 8 2 L leucine 12.9 30 2 M methionine 0.9 2 1 N asparagine 3.0 7 1 P proline 6.4 15 1 Q glutamine 5.6 13 1 R arginine 6.0 14 2 S serine 8.6 20 3 T threonine 4.3 10 2 V valine 6.9 16 2 W tryptophan 0.9 2 1 Y tyrosine 3.0 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tumor necrosis factor alpha LTA 0.137 lymphotoxin alpha precursor LTA 0.137 lymphotoxin alpha precursor TNFSF15 0.128 tumor necrosis factor (ligand) superfamily, member 1... FASLG 0.098 fas ligand TNFSF14 0.096 tumor necrosis factor ligand superfamily, member 14 ... TNFSF14 0.096 tumor necrosis factor ligand superfamily, member 14 ... LTB 0.089 lymphotoxin-beta isoform a TNFSF11 0.052 tumor necrosis factor ligand superfamily, member 11 ... TNFSF11 0.052 tumor necrosis factor ligand superfamily, member 11 i... CD40LG 0.050 CD40 ligand TNFSF10 0.046 tumor necrosis factor (ligand) superfamily, member 10... TNFSF13B 0.036 tumor necrosis factor superfamily, member 13b isofo... TNFSF13 0.027 tumor necrosis factor ligand superfamily, member 13 ... TNFSF13 0.027 tumor necrosis factor ligand superfamily, member 13 i... TNFSF13 0.027 tumor necrosis factor ligand superfamily, member 13 ... TNFSF12-TNFSF13 0.027 TNFSF12-TNFSF13 protein TNFSF13B 0.025 tumor necrosis factor superfamily, member 13b isoform... LOC100293104 0.011 PREDICTED: hypothetical protein LOC100294380 0.011 PREDICTED: hypothetical protein LOC100287047 0.011 PREDICTED: hypothetical protein XP_002344159 TNFSF8 0.009 tumor necrosis factor (ligand) superfamily, member 8 ... CRKRS 0.009 Cdc2-related kinase, arginine/serine-rich isoform 2... CRKRS 0.009 Cdc2-related kinase, arginine/serine-rich isoform 1... GRM5 0.007 glutamate receptor, metabotropic 5 isoform a precur... GRM5 0.007 glutamate receptor, metabotropic 5 isoform b precurso... CEACAM1 0.007 carcinoembryonic antigen-related cell adhesion molec... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.