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Search of human proteins with 4507385
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507385 transcription elongation factor A protein 2 isoform
a [Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507385 transcription elongation factor A protein 2 isoform a... 599 e-171
gi|38505156 transcription elongation factor A protein 2 isoform ... 549 e-156
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 392 e-109
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 376 e-104
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 352 2e-97
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 343 1e-94
gi|154146187 TFIIS central domain-containing protein 1 [Homo sap... 132 4e-31
gi|7662018 PHD finger protein 3 [Homo sapiens] 62 6e-10
gi|28558977 mediator complex subunit 26 [Homo sapiens] 53 4e-07
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 50 3e-06
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 50 3e-06
gi|47271475 SPOC domain containing 1 [Homo sapiens] 49 7e-06
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 48 1e-05
gi|208022641 elongin A [Homo sapiens] 45 6e-05
gi|23308505 hypothetical protein LOC127428 [Homo sapiens] 44 2e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 39 0.006
gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 39 0.007
gi|41152074 steroid-sensitive protein 1 [Homo sapiens] 39 0.007
gi|154816198 transcription elongation factor B polypeptide 3C-li... 38 0.009
gi|156938279 transcription elongation factor B polypeptide 3C [H... 38 0.009
gi|23097321 zinc finger protein 383 [Homo sapiens] 37 0.016
gi|45439357 elongin A2 [Homo sapiens] 37 0.021
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens] 36 0.047
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens] 36 0.047
gi|34303941 zinc finger protein 567 [Homo sapiens] 35 0.061
gi|221136803 zinc finger protein 776 [Homo sapiens] 35 0.080
gi|47271457 zinc finger protein 2 homolog [Homo sapiens] 34 0.14
gi|32698748 zinc finger protein 248 [Homo sapiens] 34 0.14
gi|21389599 zinc finger protein 570 [Homo sapiens] 33 0.23
gi|37059814 ETAA16 protein [Homo sapiens] 33 0.23
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 599 bits (1544), Expect = e-171
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS 60
MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
Sbjct: 1 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS 60
Query: 61 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP 120
SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
Sbjct: 61 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP 120
Query: 121 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN 180
STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
Sbjct: 121 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN 180
Query: 181 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK 240
TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
Sbjct: 181 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK 240
Query: 241 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
Sbjct: 241 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 549 bits (1415), Expect = e-156
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 28 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 87
MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
Query: 88 RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT 147
RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT
Sbjct: 61 RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT 120
Query: 148 AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN 207
AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN
Sbjct: 121 AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN 180
Query: 208 VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK 267
VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK
Sbjct: 181 VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK 240
Query: 268 NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
Sbjct: 241 NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 392 bits (1006), Expect = e-109
Identities = 201/301 (66%), Positives = 241/301 (80%), Gaps = 7/301 (2%)
Query: 5 EEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEE 64
E+E+ R A+++DKMV KK+A GA+DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEE
Sbjct: 2 EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
Query: 65 VIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPR 118
V +LAKSLIKSWKKLLD S K + + P TS +R+ S + R +
Sbjct: 62 VTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETN 121
Query: 119 APSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDV 178
A T +++FP P T D+VR KCREML AAL+T D++AIGAD E L +QIEE I++++
Sbjct: 122 ARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 180
Query: 179 GNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 238
NTDMKYKNRVRSRISNLKDAKNP+LR+NVLCG I P A MT+EEMASDELKE+RK +
Sbjct: 181 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 240
Query: 239 TKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKF 298
TKEAIREHQMA+TGGTQTDLFTCGKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKF
Sbjct: 241 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 300
Query: 299 C 299
C
Sbjct: 301 C 301
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 376 bits (965), Expect = e-104
Identities = 195/288 (67%), Positives = 230/288 (79%), Gaps = 7/288 (2%)
Query: 18 MVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 77
MV KK+A GA+DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEEV +LAKSLIKSWK
Sbjct: 1 MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
Query: 78 KLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPV 131
KLLD S K + + P TS +R+ S + R + A T +++FP
Sbjct: 61 KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRA 119
Query: 132 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS 191
P T D+VR KCREML AAL+T D++AIGAD E L +QIEE I++++ NTDMKYKNRVRS
Sbjct: 120 PSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 179
Query: 192 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART 251
RISNLKDAKNP+LR+NVLCG I P A MT+EEMASDELKE+RK +TKEAIREHQMA+T
Sbjct: 180 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKT 239
Query: 252 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
GGTQTDLFTCGKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKFC
Sbjct: 240 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 352 bits (904), Expect = 2e-97
Identities = 187/301 (62%), Positives = 223/301 (74%), Gaps = 28/301 (9%)
Query: 5 EEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEE 64
E+E+ R A+++DKMV KK+A STR+GMSVNA+RKQS+DEE
Sbjct: 2 EDEVVRFAKKMDKMVQKKNA---------------------STRIGMSVNAIRKQSTDEE 40
Query: 65 VIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPR 118
V +LAKSLIKSWKKLLD S K + + P TS +R+ S + R +
Sbjct: 41 VTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETN 100
Query: 119 APSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDV 178
A T +++FP P T D+VR KCREML AAL+T D++AIGAD E L +QIEE I++++
Sbjct: 101 ARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 159
Query: 179 GNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 238
NTDMKYKNRVRSRISNLKDAKNP+LR+NVLCG I P A MT+EEMASDELKE+RK +
Sbjct: 160 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 219
Query: 239 TKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKF 298
TKEAIREHQMA+TGGTQTDLFTCGKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKF
Sbjct: 220 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 279
Query: 299 C 299
C
Sbjct: 280 C 280
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 343 bits (879), Expect = 1e-94
Identities = 179/348 (51%), Positives = 244/348 (70%), Gaps = 50/348 (14%)
Query: 2 MGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS 61
MG+EEE+ RIA++L+KMV +K+ EGA+DLL++L + +++ LLQ+TR+G++VN +RK S
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS 60
Query: 62 DEEVIALAKSLIKSWKKLLDA------------SDAKARERG---------RGMPLPTSS 100
D+EV++LAK LIK+WK+LLD+ AK +E+G G+ P
Sbjct: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK 120
Query: 101 RD--------------ASEAP--------DPSRKRPELPRAPSTPRITTFP-------PV 131
R+ AS +P + S+ + E P+ PS+P TF P
Sbjct: 121 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC 180
Query: 132 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS 191
+T D+VR+KC EML+AAL+ D D+ G +C++++++IE+ I++++ +TDMKY+NRVRS
Sbjct: 181 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS 240
Query: 192 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART 251
RISNLKD +NP LRRNVL GAI+ IA MT+EEMASDEL+E+R AMT+EAIREHQMA+T
Sbjct: 241 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
Query: 252 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
GGT TDLF C KC+KKNCTY QVQTRS+DEPMTTFV+CNECGNRWKFC
Sbjct: 301 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>gi|154146187 TFIIS central domain-containing protein 1 [Homo
sapiens]
Length = 381
Score = 132 bits (332), Expect = 4e-31
Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 58/348 (16%)
Query: 2 MGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS 61
M + +IA A ++++++K++ E + L EL+ + +T LQ T V +V + K
Sbjct: 31 MSDKNQIAARASLIEQLMSKRNFEDLGNHLTELETIYVTKEHLQETDVVRAVYRVLKNCP 90
Query: 62 DEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDAS-EAPDPSRKR------- 113
+ AK L+ WK + + +KAR + P+ + + S + DPS+
Sbjct: 91 SVALKKKAKCLLSKWKAVYKQTHSKARNSPKLFPVRGNKEENSGPSHDPSQNETLGICSS 150
Query: 114 ----------------PELPRAPSTPRITTF-----------------PPVPVTCDAVRN 140
PE P+ F P P+ R
Sbjct: 151 NSLSSQDVAKLSEMIVPENRAIQLKPKEEHFGDGDPESTGKRSSELLDPTTPM-----RT 205
Query: 141 KCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAK 200
KC E+L AAL + + + +IEE +F KYK +RS+++NLK+ +
Sbjct: 206 KCIELLYAALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANLKNPR 265
Query: 201 NPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART-GGTQTDLF 259
N L++N+L G +P++ A MT EMA+ ELK++R + T+ I+EH + + GTQT+
Sbjct: 266 NSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHYLPQVIDGTQTNKI 325
Query: 260 TCGKCRKKNCTYT-----------QVQTRSSDEPMTTFVVCNECGNRW 296
C +C K NC T V+ + DE M T+V+CNECG +W
Sbjct: 326 KCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQW 373
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 62.0 bits (149), Expect = 6e-10
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 137 AVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNL 196
+VR+ +++L L TD + +++ +IE+ +F +TD KYKN+ RS + NL
Sbjct: 930 SVRHSLKDILMKRL-TDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNL 988
Query: 197 KDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAI 243
KD KN L + VL G +TP + M+ EE+AS EL R+ + I
Sbjct: 989 KDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTI 1035
>gi|28558977 mediator complex subunit 26 [Homo sapiens]
Length = 600
Score = 52.8 bits (125), Expect = 4e-07
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 10 RIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALA 69
R+ + +D ++ ++++ L+ PIT L+ TR+G +N +RK++ +EE+ A
Sbjct: 14 RLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRA 73
Query: 70 KSLIKSWKKLLD-ASDAKARERG 91
K L++SW+KL++ A +A RG
Sbjct: 74 KKLLRSWQKLIEPAHQHEAALRG 96
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 74 KSWKKLLDASDAKA-RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVP 132
+ W +S A A R+ G P P ++ AS+ S R P P + P P
Sbjct: 597 RPWLSATPSSGASAARQAG---PAPAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAP 653
Query: 133 VTCDA---------------VRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRD 177
A +R +E+L + D + + +++ IE+ +F
Sbjct: 654 GRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNL 713
Query: 178 VGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 231
TD +YK++ RS + NLKD KN L VL I+ ++ + EE+ S EL
Sbjct: 714 FQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKEL 767
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 74 KSWKKLLDASDAKA-RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVP 132
+ W +S A A R+ G P P ++ AS+ S R P P + P P
Sbjct: 597 RPWLSATPSSGASAARQAG---PAPAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAP 653
Query: 133 VTCDA---------------VRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRD 177
A +R +E+L + D + + +++ IE+ +F
Sbjct: 654 GRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNL 713
Query: 178 VGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 231
TD +YK++ RS + NLKD KN L VL I+ ++ + EE+ S EL
Sbjct: 714 FQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKEL 767
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 48.5 bits (114), Expect = 7e-06
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 97 PTSSRDASEAPDPSRKRPELPRAPS-TPRITTFPP---VPVTCDAVRNKCREMLTAALQT 152
P+S S++ + LP P + ++ P + V VR+ +E+L L+
Sbjct: 568 PSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSM-QEVLWTRLRE 626
Query: 153 DHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGA 212
D V E ++A IE ++ T+ +YK + RS + NL+D +N DL V+ G
Sbjct: 627 LPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGD 686
Query: 213 ITPQQIAVMTSEEMASDELKEIRKAMTKEAI 243
+TP + M+S ++A EL R K +
Sbjct: 687 VTPYDLVRMSSMQLAPQELARWRDQEEKRGL 717
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 47.8 bits (112), Expect = 1e-05
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 260 TCGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
+C KC + Q+QTRS+DEPMTTF C +CG+RW+
Sbjct: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>gi|208022641 elongin A [Homo sapiens]
Length = 798
Score = 45.4 bits (106), Expect = 6e-05
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 2 MGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS 61
M E + + + ++ + + L++L +PIT+ +L T VG +VN+LRK
Sbjct: 27 MAAESALQVVEKLQARLAANPDPKKLLKYLKKLSTLPITVDILAETGVGKTVNSLRKH-- 84
Query: 62 DEEVIALAKSLIKSWKKLL 80
E V + A+ L+ WKKL+
Sbjct: 85 -EHVGSFARDLVAQWKKLV 102
>gi|23308505 hypothetical protein LOC127428 [Homo sapiens]
Length = 208
Score = 43.5 bits (101), Expect = 2e-04
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 6 EEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEV 65
E+I R L+ + ++ E ++ L+ELK + +L+STR+G +VN +RK SD EV
Sbjct: 40 EDIKRWKTMLE--LPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKH-SDSEV 96
Query: 66 IALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSR 101
+LA+ + WK + + R P S R
Sbjct: 97 ASLAREVYTEWKTFTEKHSNRPSIEVRSDPKTESLR 132
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 38.9 bits (89), Expect = 0.006
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 30 LLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARE 89
+L L+ +P+T+ L+ V L K S DEE+ LA L+ W ++ R
Sbjct: 94 ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVI-------RS 146
Query: 90 RGRGMPLPTSSRDASEAPDPSRKRPELPRAPST 122
+ P + +D + D + R LP P T
Sbjct: 147 QSSTQP---AEKDKKKRKDEGKSRTTLPERPLT 176
>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 38.5 bits (88), Expect = 0.007
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 83 SDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPV------TCD 136
S+ K + R PT + P LP+ PSTPR TT PP P T
Sbjct: 308 SEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATTVTRSTSR 367
Query: 137 AVRNKCREMLTAALQT 152
AV R M T A T
Sbjct: 368 AVTVAARPMTTTAFPT 383
>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 38.5 bits (88), Expect = 0.007
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 83 SDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPV------TCD 136
S+ K + R PT + P LP+ PSTPR TT PP P T
Sbjct: 308 SEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATTVTRSTSR 367
Query: 137 AVRNKCREMLTAALQT 152
AV R M T A T
Sbjct: 368 AVTVAARPMTTTAFPT 383
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 38.1 bits (87), Expect = 0.009
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 35/136 (25%)
Query: 17 KMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSW 76
++ TK + L++L A+P+T +L T + +V LRK + V A+ L W
Sbjct: 17 RLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARW 73
Query: 77 KKLL--------DASD-------------AKARERGRGMP-LPTSSRDASEAPD------ 108
KKL+ D D + RE+ G P T+ R S +P+
Sbjct: 74 KKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPRSPSHSPEHRRTAR 133
Query: 109 ---PSRKRPELPRAPS 121
P ++RP PR+PS
Sbjct: 134 RTPPGQQRPH-PRSPS 148
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 38.1 bits (87), Expect = 0.009
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 35/136 (25%)
Query: 17 KMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSW 76
++ TK + L++L A+P+T +L T + +V LRK + V A+ L W
Sbjct: 17 RLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARW 73
Query: 77 KKLL--------DASD-------------AKARERGRGMP-LPTSSRDASEAPD------ 108
KKL+ D D + RE+ G P T+ R S +P+
Sbjct: 74 KKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPRSPSHSPEHRRTAR 133
Query: 109 ---PSRKRPELPRAPS 121
P ++RP PR+PS
Sbjct: 134 RTPPGQQRPH-PRSPS 148
>gi|23097321 zinc finger protein 383 [Homo sapiens]
Length = 475
Score = 37.4 bits (85), Expect = 0.016
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 230 ELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVV 288
+ KE KA T+ + +R+HQ G + CGK +N Q Q +DE
Sbjct: 367 DCKECGKAFTQSSQLRQHQRIHAGEKPFECLECGKAFTQNSQLFQHQRIHTDEKP---YE 423
Query: 289 CNECGNRWKFC 299
CNECG + C
Sbjct: 424 CNECGKAFNKC 434
>gi|45439357 elongin A2 [Homo sapiens]
Length = 753
Score = 37.0 bits (84), Expect = 0.021
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 17 KMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSW 76
++ TK + L++L A+P+T +L T + +V LRK + V A+ L W
Sbjct: 17 RLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARW 73
Query: 77 KKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPP 130
KKL+ D R + S + EA K P + PR + P
Sbjct: 74 KKLV-LVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPRSPSHSP 126
>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
Length = 659
Score = 35.8 bits (81), Expect = 0.047
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 240 KEAIREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFVVCNECG 293
K A+ +HQ TG CGKC +K+ T ++T + ++P CNECG
Sbjct: 355 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 405
Score = 32.3 bits (72), Expect = 0.52
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 242 AIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTR--SSDEPMTTFVVCNECG 293
A+ HQ TG + + CGKC + +Y + R S ++P CNECG
Sbjct: 553 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 601
>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
Length = 697
Score = 35.8 bits (81), Expect = 0.047
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 240 KEAIREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFVVCNECG 293
K A+ +HQ TG CGKC +K+ T ++T + ++P CNECG
Sbjct: 393 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 443
Score = 32.3 bits (72), Expect = 0.52
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 242 AIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTR--SSDEPMTTFVVCNECG 293
A+ HQ TG + + CGKC + +Y + R S ++P CNECG
Sbjct: 591 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 639
>gi|34303941 zinc finger protein 567 [Homo sapiens]
Length = 616
Score = 35.4 bits (80), Expect = 0.061
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 228 SDELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTT 285
S E + KA ++++ + HQ TG CGKC R+K +T + ++P
Sbjct: 529 SYECPQCGKAFSRKSYLIHHQRTHTGEKPYKCSECGKCFRQKTNLIVHQRTHTGEKP--- 585
Query: 286 FVVCNECGNRWKF 298
VCNECG + +
Sbjct: 586 -YVCNECGKSFSY 597
>gi|221136803 zinc finger protein 776 [Homo sapiens]
Length = 518
Score = 35.0 bits (79), Expect = 0.080
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 230 ELKEIRKAMT-KEAIREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFV 287
E KE RK+ K + EHQ TG + CGKC +K Q S + P
Sbjct: 405 ECKECRKSFRYKSHLTEHQRVHTGERPYECRECGKCFHQKGSLIQHQQIHSGERPHE--- 461
Query: 288 VCNECG 293
C ECG
Sbjct: 462 -CGECG 466
>gi|47271457 zinc finger protein 2 homolog [Homo sapiens]
Length = 461
Score = 34.3 bits (77), Expect = 0.14
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 230 ELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQ-TRSSDEPMTTFV 287
E E KA ++ A + EHQ TG + CGK KN + T Q T + ++P
Sbjct: 383 ECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQ--- 439
Query: 288 VCNECG 293
CNECG
Sbjct: 440 -CNECG 444
Score = 28.5 bits (62), Expect = 7.5
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 230 ELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVV 288
E E KA ++ + HQ + TG + CGK K+ T T Q + E
Sbjct: 243 ECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKP---YK 299
Query: 289 CNECG 293
CN+CG
Sbjct: 300 CNKCG 304
>gi|32698748 zinc finger protein 248 [Homo sapiens]
Length = 579
Score = 34.3 bits (77), Expect = 0.14
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 230 ELKEIRKAM-TKEAIREHQMARTGGTQTDLFTCGK--CRKKNCTYTQVQTRSSDEPMTTF 286
E K+ K K + EHQ TG + CGK C + T Q +T + ++P
Sbjct: 437 ECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACGKSFCHRSALTVHQ-RTHTGEKPF--- 492
Query: 287 VVCNECGNRWKFC 299
+CNECG FC
Sbjct: 493 -ICNECGK--SFC 502
Score = 28.9 bits (63), Expect = 5.8
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 230 ELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC 289
E K K K A+ +HQ+ GG D G K TQ++ + E TF C
Sbjct: 326 EYKVSDKTWEKSALLKHQIVHMGGKSYDYNENGSNFSKKSHLTQLRRAHTGE--KTF-EC 382
Query: 290 NECG 293
ECG
Sbjct: 383 GECG 386
Score = 28.9 bits (63), Expect = 5.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 240 KEAIREHQMARTGGTQTDLFTCGK--CRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 297
K + +HQ TG + CGK C+K + T Q +T + ++P C +CG
Sbjct: 392 KSNLTQHQRTHTGEKPYECTECGKAFCQKPHLTNHQ-RTHTGEKPYE----CKQCGK--T 444
Query: 298 FC 299
FC
Sbjct: 445 FC 446
>gi|21389599 zinc finger protein 570 [Homo sapiens]
Length = 536
Score = 33.5 bits (75), Expect = 0.23
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 232 KEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQ-TRSSDEPMTTFVVC 289
+E RKA ++ A + +HQ TG + CGK + + TQ Q + ++P C
Sbjct: 417 QECRKAFSQIAYLAQHQRVHTGEKPYECIECGKAFSNDSSLTQHQRVHTGEKPYE----C 472
Query: 290 NECGNRWKFC 299
CG + +C
Sbjct: 473 TVCGKAFSYC 482
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 216 QQIAVMTSEEMASDELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQV 274
Q + V T E+ E K RKA ++ A + +HQ TG + CGK + Q
Sbjct: 291 QHLRVHTGEKPY--ECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQH 348
Query: 275 Q-TRSSDEPMTTFVVCNECG 293
Q + ++P CN CG
Sbjct: 349 QRVHTGEKPYE----CNVCG 364
>gi|37059814 ETAA16 protein [Homo sapiens]
Length = 926
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 6 EEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQS-TRVGMSVNALRKQSSDEE 64
+EI+ I R+ K + +D+ A+P T + + +R +S L+ QS +EE
Sbjct: 131 DEISHIVNRIAPQDEKPTTNSMLDMWIGETAIPCTPSVAKGKSRAKISCTKLKTQSQEEE 190
Query: 65 VIALAKSLIKSWKKL 79
++ LAK K+ ++L
Sbjct: 191 LMKLAKQFDKNMEEL 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,144,357
Number of Sequences: 37866
Number of extensions: 528050
Number of successful extensions: 4307
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 4000
Number of HSP's gapped (non-prelim): 547
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.