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Search of human proteins with 4507133
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
(76 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 153 3e-38
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 141 1e-34
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 141 1e-34
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 141 1e-34
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 118 9e-28
gi|169203121 PREDICTED: similar to small nuclear ribonucleoprote... 101 1e-22
gi|169203577 PREDICTED: similar to small nuclear ribonucleoprote... 101 1e-22
gi|169202369 PREDICTED: similar to small nuclear ribonucleoprote... 101 1e-22
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 57 2e-09
gi|5901998 Sm protein F [Homo sapiens] 43 5e-05
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 42 1e-04
gi|7657313 Lsm1 protein [Homo sapiens] 40 4e-04
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 38 0.002
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 37 0.003
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 37 0.003
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 37 0.003
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 36 0.008
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 33 0.038
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 33 0.038
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 33 0.050
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 33 0.050
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.084
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.084
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.084
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.084
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 32 0.084
gi|145199237 transcription elongation factor B polypeptide 3 bin... 28 1.2
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 28 1.6
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 28 1.6
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 28 1.6
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 153 bits (387), Expect = 3e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 61 VIRGNSIIMLEALERV 76
VIRGNSIIMLEALERV
Sbjct: 61 VIRGNSIIMLEALERV 76
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 141 bits (356), Expect = 1e-34
Identities = 70/74 (94%), Positives = 70/74 (94%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
MSKAHPPELKKF DKK SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ NIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 VIRGNSIIMLEALE 74
IRGNSIIMLEALE
Sbjct: 61 EIRGNSIIMLEALE 74
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 141 bits (356), Expect = 1e-34
Identities = 70/74 (94%), Positives = 70/74 (94%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
MSKAHPPELKKF DKK SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ NIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 VIRGNSIIMLEALE 74
IRGNSIIMLEALE
Sbjct: 61 EIRGNSIIMLEALE 74
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 141 bits (356), Expect = 1e-34
Identities = 70/74 (94%), Positives = 70/74 (94%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
MSKAHPPELKKF DKK SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ NIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 VIRGNSIIMLEALE 74
IRGNSIIMLEALE
Sbjct: 61 EIRGNSIIMLEALE 74
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 118 bits (296), Expect = 9e-28
Identities = 58/62 (93%), Positives = 60/62 (96%)
Query: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 72
MDKKLSLKLNGGRHVQGIL+G DPFMNLVIDECVEMATSGQQNN GMVVIRGNSI+MLEA
Sbjct: 1 MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEA 60
Query: 73 LE 74
LE
Sbjct: 61 LE 62
>gi|169203121 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 101 bits (251), Expect = 1e-22
Identities = 56/76 (73%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
M+KAH +LKK MDK LSLKLNGGR VQGIL GF FMNL+IDECV+MA SGQQNNI V
Sbjct: 1 MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
Query: 61 VIRGNSIIMLEALERV 76
I GNSII L+ALE+V
Sbjct: 60 EIGGNSIITLKALEQV 75
>gi|169203577 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 101 bits (251), Expect = 1e-22
Identities = 56/76 (73%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
M+KAH +LKK MDK LSLKLNGGR VQGIL GF FMNL+IDECV+MA SGQQNNI V
Sbjct: 1 MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
Query: 61 VIRGNSIIMLEALERV 76
I GNSII L+ALE+V
Sbjct: 60 EIGGNSIITLKALEQV 75
>gi|169202369 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 101 bits (251), Expect = 1e-22
Identities = 56/76 (73%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
M+KAH +LKK MDK LSLKLNGGR VQGIL GF FMNL+IDECV+MA SGQQNNI V
Sbjct: 1 MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
Query: 61 VIRGNSIIMLEALERV 76
I GNSII L+ALE+V
Sbjct: 60 EIGGNSIITLKALEQV 75
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
Length = 103
Score = 57.4 bits (137), Expect = 2e-09
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
+L K++DK + +K GGR GIL+GFDP +NLV+D +E + +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 60 VVIRGNSIIML 70
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>gi|5901998 Sm protein F [Homo sapiens]
Length = 80
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
LK+ + + + +KLN G +G+L D +MN+ +++ E +N G IRGN+++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVL 71
Query: 69 MLEALER 75
+ +R
Sbjct: 72 YISTQKR 78
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 41.6 bits (96), Expect = 1e-04
Identities = 18/70 (25%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN----NIGMVVIRG 64
L+ ++++ +++ + GR + G L+GFD +NL++DE E S Q +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSIIMLEALE 74
+++ ++ ++
Sbjct: 65 DNVAVIGEID 74
>gi|7657313 Lsm1 protein [Homo sapiens]
Length = 133
Score = 40.0 bits (92), Expect = 4e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---IGMVVIRGNSIIM 69
+DKK + L GR + G LR D F NLV+ + VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 70 LEALE 74
L ++
Sbjct: 74 LGEID 78
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/48 (29%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + + +G ++++G++I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 37.4 bits (85), Expect = 0.003
Identities = 14/48 (29%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + + +G ++++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 37.4 bits (85), Expect = 0.003
Identities = 14/48 (29%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + + +G ++++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 37.4 bits (85), Expect = 0.003
Identities = 14/48 (29%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + + +G ++++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
a [Homo sapiens]
Length = 91
Score = 35.8 bits (81), Expect = 0.008
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 2 SKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI--- 57
S+ P EL K + ++ + + + + G L GFD F+N+V+++ E + + I
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 58 GMVVIRGNSIIML 70
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 33.1 bits (74), Expect = 0.050
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSIIML 70
+ + + G L GFD F+N+V+++ E + + I +++ GN+I ML
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 33.1 bits (74), Expect = 0.050
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSIIML 70
+ + + G L GFD F+N+V+++ E + + I +++ GN+I ML
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---- 56
M+ ++ + +D ++ L GR G + FD MNL++ +C E +N
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 57 ------IGMVVIRGNSIIML 70
+G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ 54
AH P L+ KK + G V ++R ++NL I+EC++ TS Q+
Sbjct: 792 AHSPSLQSL--KKPIIPKEFGGKVPTVIR--QRYLNLFIEECLKFCTSNQE 838
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDEC----------VEMATSGQ 53
A L++ +D ++ L G GI + FD +NL++ +C V+ +
Sbjct: 149 ARVARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEE 208
Query: 54 QNNIGMVVIRGNSIIML 70
++ G+V++ G +++ +
Sbjct: 209 KHFWGLVLLHGENLVSM 225
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDEC----------VEMATSGQ 53
A L++ +D ++ L G GI + FD +NL++ +C V+ +
Sbjct: 149 ARVARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEE 208
Query: 54 QNNIGMVVIRGNSIIML 70
++ G+V++ G +++ +
Sbjct: 209 KHFWGLVLLHGENLVSM 225
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDEC----------VEMATSGQ 53
A L++ +D ++ L G GI + FD +NL++ +C V+ +
Sbjct: 149 ARVARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEE 208
Query: 54 QNNIGMVVIRGNSIIML 70
++ G+V++ G +++ +
Sbjct: 209 KHFWGLVLLHGENLVSM 225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,673,416
Number of Sequences: 37866
Number of extensions: 81934
Number of successful extensions: 159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 37
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.