Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128354 Sequence: fasta or formatted (75aa) NCBI GI: 169202369
Description:

PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G

Referenced in:

Capping and Splicing

Other entries for this name:
alt mRNA [75aa] PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
alt mRNA [75aa] PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          3           1
 C cysteine            2.7          2           1
 D aspartate           2.7          2           1
 E glutamate           4.0          3           1
 F phenylalanine       2.7          2           1
 G glycine             9.3          7           2
 H histidine           2.7          2           1
 I isoleucine          9.3          7           2
 K lysine             10.7          8           2
 L leucine            13.3         10           1
 M methionine          6.7          5           1
 N asparagine          8.0          6           2
 P proline             0.0          0           0
 Q glutamine           5.3          4           2
 R arginine            2.7          2           1
 S serine              6.7          5           1
 T threonine           2.7          2           1
 V valine              5.3          4           1
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to small nuclear ribonucleoprote... 
LOC100128354          1.000   PREDICTED: similar to small nuclear ribonucleoprote...
LOC100128354          1.000   PREDICTED: similar to small nuclear ribonucleoprote...
SNRPG                 0.598   small nuclear ribonucleoprotein polypeptide G 
LOC100130932          0.559   small nuclear ribonucleoprotein G-like protein [Hom...
LOC100130932          0.559   PREDICTED: small nuclear ribonucleoprotein G-like p...
LOC100130932          0.559   PREDICTED: small nuclear ribonucleoprotein G-like p...
LOC100132425          0.449   PREDICTED: similar to small nuclear ribonucleoprote...
LSM7                  0.063   U6 snRNA-associated Sm-like protein LSm7 
REXO1                 0.024   transcription elongation factor B polypeptide 3 bin...
LSM5                  0.016   LSM5 homolog, U6 small nuclear RNA associated isoform...
LSM8                  0.016   U6 snRNA-associated Sm-like protein LSm8 
RNF213                0.016   ring finger protein 213 
LSM5                  0.008   LSM5 homolog, U6 small nuclear RNA associated isofo...
LSM5                  0.008   LSM5 homolog, U6 small nuclear RNA associated isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press