Search of human proteins with 4507129

Search of human proteins with 4507129

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
         (92 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s...   185   8e-48
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]            180   2e-46
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]            180   2e-46
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ...   180   2e-46
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform...    44   4e-05
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo...    42   1e-04
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo...    42   1e-04
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom...    39   0.001
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p...    39   0.001
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p...    39   0.001
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s...    38   0.002
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]     35   0.017
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote...    34   0.022
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]     33   0.038
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    32   0.084
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    32   0.084
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ...    32   0.084
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ...    32   0.084
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ...    32   0.084
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ...    32   0.084
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s...    32   0.084
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ...    29   0.72 
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa...    29   0.72 
gi|7657315 Lsm3 protein [Homo sapiens]                                 29   0.72 
gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo s...    28   1.6  
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]           27   4.6  
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]           27   4.6  
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]           27   4.6  
gi|14149617 nuclear receptor coactivator 4 isoform 3 [Homo sapiens]    26   7.9  
gi|223890287 nuclear receptor coactivator 4 isoform 3 [Homo sapi...    26   7.9  

>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
          sapiens]
          Length = 92

 Score =  185 bits (469), Expect = 8e-48
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
          MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
Sbjct: 1  MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60

Query: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92
          AEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92


>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
          Length = 92

 Score =  180 bits (457), Expect = 2e-46
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query: 1  MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
          MAYRGQGQKVQKVMVQPI+LIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
Sbjct: 1  MAYRGQGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60

Query: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92
          AEEIHSKTKSRKQLGRIMLKG NITLLQSVSN
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGGNITLLQSVSN 92


>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
          Length = 92

 Score =  180 bits (457), Expect = 2e-46
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query: 1  MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
          MAYRGQGQKVQKVMVQPI+LIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
Sbjct: 1  MAYRGQGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60

Query: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92
          AEEIHSKTKSRKQLGRIMLKG NITLLQSVSN
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGGNITLLQSVSN 92


>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
          sapiens]
          Length = 92

 Score =  180 bits (457), Expect = 2e-46
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query: 1  MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
          MAYRGQGQKVQKVMVQPI+LIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
Sbjct: 1  MAYRGQGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60

Query: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92
          AEEIHSKTKSRKQLGRIMLKG NITLLQSVSN
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGGNITLLQSVSN 92


>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
          a [Homo sapiens]
          Length = 91

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
          P+ L+ + + +R  I +    + +  I G ++GFD+++N+VL+D  E     + R+  +L
Sbjct: 14 PLELVDKCIGSRIHIVM----KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69

Query: 75 GRIMLKGDNITLL 87
           +I+L G+NIT+L
Sbjct: 70 DQILLNGNNITML 82


>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
          isoform b [Homo sapiens]
          Length = 62

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
          I G ++GFD+++N+VL+D  E     + R+  +L +I+L G+NIT+L
Sbjct: 7  IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53


>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
          isoform b [Homo sapiens]
          Length = 62

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
          I G ++GFD+++N+VL+D  E     + R+  +L +I+L G+NIT+L
Sbjct: 7  IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53


>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
          sapiens]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 15/48 (31%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
          ++G + GFD +MNLV+D+  E+ + +  +K +G + ++G++I +L+++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73


>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
          protein [Homo sapiens]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 15/48 (31%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
          ++G + GFD +MNLV+D+  E+ + +  +K +G + ++G++I +L+++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73


>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
          protein [Homo sapiens]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 15/48 (31%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
          ++G + GFD +MNLV+D+  E+ + +  +K +G + ++G++I +L+++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73


>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
          sapiens]
          Length = 76

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 14/48 (29%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
          ++G + GFD +MNLV+D+  E+ + +  +  +G ++++G++I +L+++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLEAL 73


>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
          sapiens]
          Length = 96

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 43 IEGCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
          I G + GFD+ +NL+LD++ E + S ++  +Q  LG  +++GDN+ ++  +
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEI 73


>gi|169194552 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 62

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 13/48 (27%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
          ++G + G D +MNLV+D+  E+ + +  +   G ++++G++I +L+++
Sbjct: 15 VQGILQGLDPFMNLVIDECVEM-ATSGQQNNTGMVVIRGNSILMLEAL 61


>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
          sapiens]
          Length = 103

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLD-------DAEEIHSKTKSRKQLG 75
          +Y+    R++     Q      G + GFD  +NLVLD       D ++ +  T+  +QLG
Sbjct: 17 KYIDKTIRVKF----QGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLG 72

Query: 76 RIMLKGDNITLL 87
           ++ +G ++ L+
Sbjct: 73 LVVCRGTSVVLI 84


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
          isoform B' [Homo sapiens]
          Length = 240

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
          isoform B [Homo sapiens]
          Length = 231

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77


>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77


>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77


>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77


>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77


>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 45 GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
          G    FD++MNL+L D +E    K K+ KQ        LG ++L+G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77


>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
          sapiens]
          Length = 108

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 19/95 (20%), Positives = 52/95 (54%), Gaps = 15/95 (15%)

Query: 6  QGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
          Q ++ ++    P++++ + ++N +  QV +  + N ++ G +  FD + N+VL++ +E+ 
Sbjct: 7  QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 64

Query: 65 -------HSKTKSR-----KQLGRIMLKGDNITLL 87
                   K KS+     + + ++ L+GD++ ++
Sbjct: 65 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 99


>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
           sapiens]
          Length = 118

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 19/95 (20%), Positives = 52/95 (54%), Gaps = 15/95 (15%)

Query: 6   QGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
           Q ++ ++    P++++ + ++N +  QV +  + N ++ G +  FD + N+VL++ +E+ 
Sbjct: 17  QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74

Query: 65  -------HSKTKSR-----KQLGRIMLKGDNITLL 87
                    K KS+     + + ++ L+GD++ ++
Sbjct: 75  TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109


>gi|7657315 Lsm3 protein [Homo sapiens]
          Length = 102

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 16/92 (17%)

Query: 8  QKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAE----- 62
          Q+    + +P++LI   L  R    +++  + +  + G +  +D+++N++L D E     
Sbjct: 8  QQTTNTVEEPLDLIRLSLDER----IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 63

Query: 63 -EIHSKT------KSRKQLGRIMLKGDNITLL 87
           EI  +T       +++ +  + ++GD + L+
Sbjct: 64 IEIDEETYEEIYKSTKRNIPMLFVRGDGVVLV 95


>gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo
          sapiens]
          Length = 86

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
          M  +G ++  D YMN+ L + EE      S   LG ++++ +N+  ++ V
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALS-GHLGEVLIRCNNVLYIRGV 75


>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
          Length = 318

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)

Query: 45  GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
           G    FD+++NL+L D +E    K K+ KQ         G ++L G+N+
Sbjct: 174 GIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENL 222


>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
          Length = 318

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)

Query: 45  GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
           G    FD+++NL+L D +E    K K+ KQ         G ++L G+N+
Sbjct: 174 GIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENL 222


>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
          Length = 318

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)

Query: 45  GCIIGFDEYMNLVLDDAEEIHS-KTKSRKQ--------LGRIMLKGDNI 84
           G    FD+++NL+L D +E    K K+ KQ         G ++L G+N+
Sbjct: 174 GIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENL 222


>gi|14149617 nuclear receptor coactivator 4 isoform 3 [Homo
          sapiens]
          Length = 614

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 10 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNM 41
          +++V  Q  + I R+L+     +VWLYEQV++
Sbjct: 45 LREVKAQIHSCISRHLECLRSREVWLYEQVDL 76


>gi|223890287 nuclear receptor coactivator 4 isoform 3 [Homo
          sapiens]
          Length = 614

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 10 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNM 41
          +++V  Q  + I R+L+     +VWLYEQV++
Sbjct: 45 LREVKAQIHSCISRHLECLRSREVWLYEQVDL 76


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,778,278
Number of Sequences: 37866
Number of extensions: 89640
Number of successful extensions: 227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 33
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.