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Search of human proteins with 4507125
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
(231 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 484 e-137
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 481 e-136
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 454 e-128
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 454 e-128
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 454 e-128
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 454 e-128
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 454 e-128
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 234 5e-62
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 234 5e-62
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 234 5e-62
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 75 4e-14
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 66 2e-11
gi|18641360 collectin sub-family member 12 [Homo sapiens] 66 3e-11
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 65 4e-11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 65 5e-11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 65 5e-11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 65 5e-11
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 65 6e-11
gi|160707881 formin 2 [Homo sapiens] 64 8e-11
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 64 1e-10
gi|4557317 annexin A11 [Homo sapiens] 64 1e-10
gi|22165433 annexin A11 [Homo sapiens] 64 1e-10
gi|22165431 annexin A11 [Homo sapiens] 64 1e-10
gi|7706501 WW domain binding protein 11 [Homo sapiens] 63 2e-10
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 63 2e-10
gi|157168329 formin 1 [Homo sapiens] 62 4e-10
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 62 5e-10
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 62 5e-10
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 62 5e-10
gi|126352608 elastin isoform e precursor [Homo sapiens] 61 7e-10
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 484 bits (1245), Expect = e-137
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231
RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 481 bits (1237), Expect = e-136
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 454 bits (1167), Expect = e-128
Identities = 212/229 (92%), Positives = 222/229 (96%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RG
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG 229
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 454 bits (1167), Expect = e-128
Identities = 212/229 (92%), Positives = 222/229 (96%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RG
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG 229
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 454 bits (1167), Expect = e-128
Identities = 212/229 (92%), Positives = 222/229 (96%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RG
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG 229
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 454 bits (1167), Expect = e-128
Identities = 212/229 (92%), Positives = 222/229 (96%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RG
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG 229
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 454 bits (1167), Expect = e-128
Identities = 212/229 (92%), Positives = 222/229 (96%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RG
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG 229
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 234 bits (597), Expect = 5e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
Query: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
Query: 127 LAGPVRGVGGPSQQVMTPQGR 147
LAGPV GVGGPSQQVMTPQ R
Sbjct: 272 LAGPVPGVGGPSQQVMTPQRR 292
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 234 bits (597), Expect = 5e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
Query: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
Query: 127 LAGPVRGVGGPSQQVMTPQGR 147
LAGPV GVGGPSQQVMTPQ R
Sbjct: 272 LAGPVPGVGGPSQQVMTPQRR 292
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 234 bits (597), Expect = 5e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
Query: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
Query: 127 LAGPVRGVGGPSQQVMTPQGR 147
LAGPV GVGGPSQQVMTPQ R
Sbjct: 272 LAGPVPGVGGPSQQVMTPQRR 292
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 75.5 bits (184), Expect = 4e-14
Identities = 60/149 (40%), Positives = 64/149 (42%), Gaps = 37/149 (24%)
Query: 85 PPPKDTGIAR--VPLAGA--AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140
PPP G A P AG AG PG G + P P P G+ P G SQ
Sbjct: 263 PPPMPPGAAGHGPPSAGTPGAGHPGHGHSH--------PHPFPPGGMPHP-----GMSQM 309
Query: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM--GPPPGMRPP 198
+ G + G P PPG GG PPP PPPGM GPPP PP
Sbjct: 310 QLAHHGPHGL------------GHPHAGPPGSGGQPPPR----PPPGMPHPGPPPMGMPP 353
Query: 199 MGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
GPP G P G P MPP GMR PPP M
Sbjct: 354 RGPPFGSPMGHPGP--MPPHGMRGPPPLM 380
Score = 53.5 bits (127), Expect = 1e-07
Identities = 38/99 (38%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPP---------MGRGAPPPGMMGPPPGMRPP 198
G+ A AA ++ A + PPPP +G G PPPGM PPPG PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGM--PPPGSFPP 245
Query: 199 MGPPMG-IPPGRGTPMGMPPP-------GMRPPPPGMRG 229
PP G +PPG P MPPP G PP G G
Sbjct: 246 PVPPPGALPPG--IPPAMPPPPMPPGAAGHGPPSAGTPG 282
Score = 45.4 bits (106), Expect = 4e-05
Identities = 50/154 (32%), Positives = 53/154 (34%), Gaps = 24/154 (15%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+ PPP V G+ P G P P P P G P G P
Sbjct: 213 DAPPPPSAPNPVVSSLGSGLPP-----PGMPPPGSFPPPVPPPGALPP----GIPPAMPP 263
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM-------GPPPGM 195
P G +A AG P G P P G P PGM GP
Sbjct: 264 PPMPPGAAGHGPPSAGTPGAGHPGH---GHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLG 320
Query: 196 RPPMGPPM--GIPPGRGTPMGMPPPGMRPPPPGM 227
P GPP G PP R P GMP PG PPP GM
Sbjct: 321 HPHAGPPGSGGQPPPRPPP-GMPHPG--PPPMGM 351
Score = 31.6 bits (70), Expect = 0.60
Identities = 33/115 (28%), Positives = 36/115 (31%), Gaps = 30/115 (26%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PPP P+ GP G P G P P P G+ GP +M P
Sbjct: 337 PPPGMPHPGPPPMGMPPRGPPFGS------PMGHPGPMPPHGMRGP--------PPLMPP 382
Query: 145 QGRGTVAAAAAAATASIAGAPTQYPPG--RGGPPPPMGRGAPPPGMMGPPPGMRP 197
G G P P G RG PPP PP GP G P
Sbjct: 383 HG--------------YTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 66.2 bits (160), Expect = 2e-11
Identities = 58/152 (38%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
L G G PG GR P+GV PQ G GP G P V Q G A
Sbjct: 606 LDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVV---QQEGLKGEQGAP 662
Query: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPP--------PGMMGPPP-----GMRPPMGPPM 203
GAP PPG GP P GR PP G MGPP G++ P GPP
Sbjct: 663 GPRGHQGAPG--PPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPP- 719
Query: 204 GI--PPGRGTPMGMPP----PGMRPPPPGMRG 229
G+ PPG G G+P PG +P PPG G
Sbjct: 720 GVPGPPGPGGSPGLPGEIGFPG-KPGPPGPTG 750
Score = 54.7 bits (130), Expect = 7e-08
Identities = 60/192 (31%), Positives = 73/192 (38%), Gaps = 42/192 (21%)
Query: 58 QAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGI-GRAAGRGIPA 116
Q E+ EK LGL GPP +D G G PG+ G RG
Sbjct: 526 QGEKGEKGSLGL-------------PGPPGRDGSKGMRGEPGELGEPGLPGEVGMRG--- 569
Query: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPP 176
PQ P GL GP VG P Q + +GT G P G+ G P
Sbjct: 570 ----PQGPPGLPGPPGRVGAPGLQGERGE-KGTRGEKGERGLDGFPGKPGD--TGQQGRP 622
Query: 177 PPMGRGAP--PPGMMGP--PPGMRPPMGPPMGIPPGRGTP-----MGMP-PPGMRPP--- 223
P G P G +GP PPG+ + G+ +G P G P PPG R P
Sbjct: 623 GPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGP 682
Query: 224 -----PPGMRGL 230
PPG++GL
Sbjct: 683 EGRDGPPGLQGL 694
Score = 53.5 bits (127), Expect = 1e-07
Identities = 65/207 (31%), Positives = 75/207 (36%), Gaps = 44/207 (21%)
Query: 58 QAEREEKRVLGLVLLRGENLVSMTVEGPP--PKDTGIARVPLAGAAGGP-----GIGRAA 110
Q ER EK G RG ++G P P DTG P GP +G A
Sbjct: 589 QGERGEKGTRGEKGERG-------LDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAG 641
Query: 111 GRGIPA------------GVPMPQAPAGLAGP--VRGVGGPSQQVMTPQGRGTVAAAAAA 156
G+P G P P+ G GP RG GP + P +G
Sbjct: 642 PPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDM 701
Query: 157 ATASIAGA-PTQYPPGRGGPPPPMGRGAPP--------PGMMGPPPGMRP-----PMGPP 202
I G Q PPG G P P G G P PG GPP P P GPP
Sbjct: 702 GPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPP 761
Query: 203 MGIPPGRGTPMGMPPPGMRPPPPGMRG 229
G P +G P G+ P PG+RG
Sbjct: 762 -GPPGTKGEPGERGEDGL-PGKPGLRG 786
Score = 50.4 bits (119), Expect = 1e-06
Identities = 51/169 (30%), Positives = 60/169 (35%), Gaps = 32/169 (18%)
Query: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
PP G+ +P G G G+ GR G P GL GP G+ GP
Sbjct: 1118 PPGPPGLPGLP--GFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPP-GIAGPQGSQGERG 1174
Query: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP---MGRGAPP-----PGMMGPPPGMRP 197
G V + G PPG GPP G PP PG GP PG +
Sbjct: 1175 ADGEVGQKGDQGHPGVPGF--MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGP-PGPQG 1231
Query: 198 PMGPPMGIP-----------------PGRGTPMGMPPPGMRPPPPGMRG 229
P G P GIP PG+ G+P P PPG +G
Sbjct: 1232 PSGLP-GIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKG 1279
Score = 49.7 bits (117), Expect = 2e-06
Identities = 54/163 (33%), Positives = 63/163 (38%), Gaps = 29/163 (17%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP D +AGAAG PGI + G+ G P PQ P+GL G + G G +
Sbjct: 1201 GPPGADG------IAGAAGPPGIQGSPGK---EGPPGPQGPSGLPG-IPGEEGKEGRDGK 1250
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPP------GRGGPPPPMGRGAPP--PGMMGPP--- 192
P G A GA + PP G G P P G PG G P
Sbjct: 1251 PGPPGEPGKAGEPGLPGPEGA--RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKD 1308
Query: 193 --PGMRPPMGP--PMGIPPGRGTP--MGMPPPGMRPPPPGMRG 229
G P GP P G P G+P G P P P G +G
Sbjct: 1309 GDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKG 1351
Score = 49.7 bits (117), Expect = 2e-06
Identities = 50/166 (30%), Positives = 59/166 (35%), Gaps = 36/166 (21%)
Query: 98 AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAA 157
+GA G PG G+ G PQ P G GP G P P GT +
Sbjct: 1293 SGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPG-EPGPSGTPGQKGSKG 1351
Query: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPP----PGMMGPP--------PGMRPPMGPP--- 202
G P P RG P P +G P PG G P PG++ GPP
Sbjct: 1352 ENGSPGLPGFLGP-RGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGK 1410
Query: 203 -----MGIP--------------PGRGTPMGMPPPGMRPPPPGMRG 229
GIP PG P+G P P +P PG+RG
Sbjct: 1411 GQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRG 1456
Score = 45.8 bits (107), Expect = 3e-05
Identities = 52/176 (29%), Positives = 67/176 (38%), Gaps = 42/176 (23%)
Query: 89 DTGIARVPLAGAAGGPGI-GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGR 147
D GI G +G PG G RG+P G P PQ PAG G G P ++ P G+
Sbjct: 1041 DPGIGVAGPPGPSGPPGDKGSPGSRGLP-GFPGPQGPAGRDG---APGNPGER--GPPGK 1094
Query: 148 GTVAAAAAAATASIAGAP--TQYPPGRGGPPPPMG----RGAP----------------P 185
+++ + ++ PPG G P G +G P P
Sbjct: 1095 PGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGP 1154
Query: 186 PGMMGPPPGMRPPMGP-----------PMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230
PG+ G PPG+ P G G G P M PPG P PPG G+
Sbjct: 1155 PGLPG-PPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPG-NPGPPGADGI 1208
Score = 45.4 bits (106), Expect = 4e-05
Identities = 50/156 (32%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 99 GAAGGPGI-GRAAGRGI--PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ----GRGTVA 151
G G PGI G G+ P G+P P G GP G P + +P R
Sbjct: 1411 GQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQE 1470
Query: 152 AAAAAATASIAGAPTQYPP-------GRGGPPPPMGRGAPP--PGMMGPP-----PGMRP 197
+A Q PP GR GPP P G+ P G MG P G+
Sbjct: 1471 ELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEG 1530
Query: 198 PMGP--PMGIPPGRGTPMGMPPPGMRPP--PPGMRG 229
P GP P G +G P G P G+R PPG+ G
Sbjct: 1531 PSGPIGPKGERGAKGDP-GAPGVGLRGEMGPPGIPG 1565
Score = 45.1 bits (105), Expect = 5e-05
Identities = 53/171 (30%), Positives = 64/171 (37%), Gaps = 44/171 (25%)
Query: 78 VSMTVEGPPPKDTGIARVPLAGA--------------AGGPGIGRAAGRGIPAGVPMPQA 123
V++ E PPP R P G+ AG G AG P G+P P+
Sbjct: 445 VTVVTEPPPPPPP--QRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAG---PMGLPGPKG 499
Query: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
G GPV G GP + G G S+ G P PPGR G G
Sbjct: 500 DIGAIGPV-GAPGPKGE-KGDVGIGPFGQGEKGEKGSL-GLPG--PPGRDGSKGMRGE-- 552
Query: 184 PPPGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
PG +G P GMR P GPP G+P P R PG++G
Sbjct: 553 --PGELGEPGLPGEVGMRGPQGPP-----------GLPGPPGRVGAPGLQG 590
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/171 (31%), Positives = 64/171 (37%), Gaps = 31/171 (18%)
Query: 82 VEGPPPKDTGIARVPLAGAAGGPG-IGRAAGRGIPAGVPMPQAPAGLAGP-VRGVGGPSQ 139
+ G P KD AG G PG +G G P G+P P P +RG G
Sbjct: 941 LRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAP-GLPGPPGKGKDGEPGLRGSPGLPG 999
Query: 140 QVMTPQGRGTVAAAAAAATAS-----------IAGAP-TQYPPGRG--GPPPPMGRGAPP 185
+ T G V + A I G+P ++ PG G GPP P G P
Sbjct: 1000 PLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSG----P 1055
Query: 186 PGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231
PG G P PG P G P G G P PPG PG+ LL
Sbjct: 1056 PGDKGSPGSRGLPGFPGPQG-PAGRDGAPGNPGERGPPG----KPGLSSLL 1101
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/162 (30%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--VRGVGGPSQQVMTPQGRGTVAAAAAA 156
GA G PG G G P P P G G +RG G + G +
Sbjct: 907 GAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPV 966
Query: 157 ATASIAGAP-TQYPPGRGGPPPPMGRGAPP-PGMMGPP-------------------PGM 195
GAP PPG+G P RG+P PG +G G
Sbjct: 967 GPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGD 1026
Query: 196 RPPMGPPMGIPPGRGTP-MGMP-PPGMRPPP-----PGMRGL 230
R G P G P RG P +G+ PPG PP PG RGL
Sbjct: 1027 RGAPGIP-GSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGL 1067
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/177 (29%), Positives = 59/177 (33%), Gaps = 37/177 (20%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRG----IPAGV--PMPQAPAGLAGPVRGVGG 136
+GP +D G G PG+ G + V P P GL G + G G
Sbjct: 1074 QGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPG-LPGFKG 1132
Query: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAPP---------- 185
P GT A + G PPG GP G RGA
Sbjct: 1133 DKGVPGKPGREGTEGKKGEAGPPGLPG-----PPGIAGPQGSQGERGADGEVGQKGDQGH 1187
Query: 186 ---PGMMGPPPGMRPP--------MGPPMGI--PPGRGTPMGMPPPGMRPPPPGMRG 229
PG MGPP PP GPP GI PG+ P G P P PG G
Sbjct: 1188 PGVPGFMGPPGNPGPPGADGIAGAAGPP-GIQGSPGKEGPPGPQGPSGLPGIPGEEG 1243
Score = 38.1 bits (87), Expect = 0.006
Identities = 37/120 (30%), Positives = 42/120 (35%), Gaps = 19/120 (15%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG GR P G P GL GP +G P+G A
Sbjct: 1500 GPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIG--------PKGERGAKGDPGAPG 1551
Query: 159 ASIAGAPTQYPPGRGGPPPPMG---RGAP----PPGMMGPP--PGMRPPMGPPMGIPPGR 209
+ G PPG G P G G P P G GP PG+ P GPP P +
Sbjct: 1552 VGLRG--EMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQ 1609
Score = 37.4 bits (85), Expect = 0.011
Identities = 38/119 (31%), Positives = 40/119 (33%), Gaps = 18/119 (15%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP KD R G G PG G G P+G P P G G G P
Sbjct: 1503 GPPGKDGLPGRAGPMGEPGRPGQGGLEG---PSG---PIGPKGERGAKGDPGAP------ 1550
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP--PGMMGP--PPGMRPP 198
G G G P G G P P G P PG+ GP PPG P
Sbjct: 1551 --GVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDP 1607
Score = 36.6 bits (83), Expect = 0.019
Identities = 57/183 (31%), Positives = 70/183 (38%), Gaps = 39/183 (21%)
Query: 60 EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGI-------GRAAGR 112
ER E + G LRGE + P + G A +P GA G PG+ G
Sbjct: 772 ERGEDGLPGKPGLRGE--IGEQGLAGRPGEKGEAGLP--GAPGFPGVRGEKGDQGEKGEL 827
Query: 113 GIPAGVPMPQAPAGLAGPVRGVGGP-SQQVMTPQGR--GTVAAAAAAATASIAGAP-TQY 168
G+P G+ + G AGP G P + + TP R G + G P Q
Sbjct: 828 GLP-GLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQG 886
Query: 169 PPGR---GGPPPPMG-------RGAP-------PPGMMGPPPGMRPPMGPP--MGIPPGR 209
PG GP P G GAP PG +G P P GPP +G P R
Sbjct: 887 RPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAP----GPSGPPGSVGAPGLR 942
Query: 210 GTP 212
GTP
Sbjct: 943 GTP 945
Score = 31.6 bits (70), Expect = 0.60
Identities = 47/162 (29%), Positives = 54/162 (33%), Gaps = 56/162 (34%)
Query: 99 GAAGGPGI----GRAAGRGIPA--GVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
G G PGI G G+G P G+P + GL GP +G+ G + V P
Sbjct: 1393 GERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGP-QGLPGENGPVGPP-------- 1443
Query: 153 AAAAATASIAGAPTQYP-PGRGGPPPPMGR---------------------GAPPPGMMG 190
G P Q PG G P M PP M
Sbjct: 1444 ----------GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMK 1493
Query: 191 PPPGMRPPMGPPM--GIPPGRGTPMGMPPPGMRPPPPGMRGL 230
G P GPP G+P GR PMG P PG GL
Sbjct: 1494 SSQGRPGPPGPPGKDGLP-GRAGPMG------EPGRPGQGGL 1528
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 89 DTGIARVPLAGAAGGPGIGRAAGR------GIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
D G V L G G PGI G G+P G+P PQ G AG G+ GP
Sbjct: 1546 DPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLP-GIPGPQGETGPAGH-PGLPGP----- 1598
Query: 143 TPQGRGTVAAAAAAATASIAGAP 165
P G + A AS+A P
Sbjct: 1599 -PGPPGQCDPSQCAYFASLAARP 1620
Score = 30.0 bits (66), Expect = 1.7
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 161 IAGAPTQYPPGRGGPPPPMGRGAPPPGM----------MGPPPGMRPPMG--PPMGIPPG 208
I P Q PPPP + P PG P G + MG PMG+P
Sbjct: 438 IPSGPCQVTVVTEPPPPPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGP 497
Query: 209 RGTPMGMPPPGMRPPPPGMRG 229
+G + P G P P G +G
Sbjct: 498 KGDIGAIGPVG-APGPKGEKG 517
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 65.9 bits (159), Expect = 3e-11
Identities = 56/166 (33%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 74 GENLVSMTV-EGPP-PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPV 131
G+ + + T+ +GPP P+ R G+ G PG G+ G P P PAG GP+
Sbjct: 432 GQLIKNFTILQGPPGPRGPRGDR----GSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPI 487
Query: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPPPGMMG 190
G P ++ G+G+ + + G P Q P G GPP P G+ PG G
Sbjct: 488 GPAGPPGER----GGKGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEG-LPGPQG 542
Query: 191 PP--PGMRPPMGPPMGIPPGRGTP-----MGMPPPGMRPPPPGMRG 229
PP G++ +G P G+P RG P GMP P P PPG G
Sbjct: 543 PPGFQGLQGTVGEP-GVPGPRGLPGLPGVPGMPGPKGPPGPPGPSG 587
Score = 38.5 bits (88), Expect = 0.005
Identities = 45/142 (31%), Positives = 52/142 (36%), Gaps = 28/142 (19%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGI----------GRAAGRGIPAGVPMPQAPAGLAGPVR 132
E PP G R P+ G AG PG G RG P G P PQ P+G GP
Sbjct: 474 EPGPPGPAG-ERGPI-GPAGPPGERGGKGSKGSQGPKGSRGSP-GKPGPQGPSGDPGPP- 529
Query: 133 GVGGPSQQVMT-PQG-------RGTVAAAAAAATASIAGAP----TQYPPGRGGPPPPMG 180
G P ++ + PQG +GTV + G P P G GPP P G
Sbjct: 530 --GPPGKEGLPGPQGPPGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGPPGPPGPSG 587
Query: 181 RGAPPPGMMGPPPGMRPPMGPP 202
P P P PP
Sbjct: 588 AVVPLALQNEPTPAPEDNGCPP 609
Score = 35.0 bits (79), Expect = 0.054
Identities = 28/69 (40%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 171 GRGGPPPPMGRGAP-----PPGMMGPPPGMRPPMGPP--MGIP--PGRGTPMGMPPPGMR 221
G GPP P G P PPG G G + GP G P PG P G P P
Sbjct: 473 GEPGPPGPAGERGPIGPAGPPGERGGK-GSKGSQGPKGSRGSPGKPGPQGPSGDPGP--- 528
Query: 222 PPPPGMRGL 230
P PPG GL
Sbjct: 529 PGPPGKEGL 537
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 65.5 bits (158), Expect = 4e-11
Identities = 47/145 (32%), Positives = 54/145 (37%), Gaps = 12/145 (8%)
Query: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
PP+ P G P AA P P AP A P R + P
Sbjct: 101 PPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP 160
Query: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPP---PPMG-RGAPPPGMMGPPPGMRPPMGP 201
G A A+ AP PP PP PP G R APPP + P + PP P
Sbjct: 161 SPGPAQPGPRAQRAAPLAAP---PPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQP 217
Query: 202 PMGIPPGRGTPMGMPPPGMRPPPPG 226
P PP + P PPP +PPP G
Sbjct: 218 P--APPQQQQP---PPPQPQPPPEG 237
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/79 (31%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 160 SIAGAPTQYPPGRGGPPPP---MGRGAP-------PPGMMGPPPGMRPPMGPPMGIPPGR 209
S A PP RG PP RGAP PP PPP P P
Sbjct: 92 SYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRA 151
Query: 210 GTPMGMPPPGMRPPPPGMR 228
PP P PG R
Sbjct: 152 AAAAATAPPSPGPAQPGPR 170
Score = 33.1 bits (74), Expect = 0.21
Identities = 36/120 (30%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP-----AGLAGPVRGVGGPSQ 139
PPP A V A A P AA P+ P P A LA P P
Sbjct: 135 PPP-----APVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPA 189
Query: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQ--YPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
V P G A AA P Q PP + PPPP + P G + RP
Sbjct: 190 -VAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARP 248
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 22/81 (27%)
Query: 129 GPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
GP G G ++QV + A+ AT + +P PPG+
Sbjct: 394 GPAPGSG--TRQVFSMAAMNKEGGTASVATGPDSPSPVPLPPGK---------------- 435
Query: 189 MGPPPGMRPPMGPPMGIPPGR 209
P + G P G PPGR
Sbjct: 436 ----PALPGADGTPFGCPPGR 452
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 65.1 bits (157), Expect = 5e-11
Identities = 53/157 (33%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--VRGVGGPSQQV 141
GPP D G AG G A G P+G P PQ P G+ GP RG GP
Sbjct: 837 GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Query: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP--------PPGMMGPPP 193
P G V + PG GPP P G+ P PPG G P
Sbjct: 897 GFPGAAGRVGPPGSNGN-----------PGPPGPPGPSGKDGPKGARGDSGPPGRAG-EP 944
Query: 194 GMRPPMGPP-MGIPPGRGTPMGMPPPGMRPPPPGMRG 229
G++ P GPP PG P G P P P G+ G
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGP---PGPQGLAG 978
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/158 (32%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP + G G PGI G P G P P P G GP G G
Sbjct: 438 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGE 496
Query: 144 PQGRGTVAAAAAAATASIAGAPTQ----YPPGRGGPPPPMGRGAP-----PPGMMGPP-- 192
P G G + G P Q P G G P G P PG G P
Sbjct: 497 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGL 556
Query: 193 PGMRPPMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRG 229
PG R G P P G+ P G P RP PPG +G
Sbjct: 557 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG 594
Score = 55.8 bits (133), Expect = 3e-08
Identities = 58/173 (33%), Positives = 60/173 (34%), Gaps = 41/173 (23%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPG----------------IGRAAGRGIPA--GVPMPQAP 124
EG P KD G L G G PG G A RG P G P P
Sbjct: 776 EGAPGKDGGRG---LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP 832
Query: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGA 183
AG AGP G P G A AGAP Q P G GP P G
Sbjct: 833 AGFAGPPGADGQP----------GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTG 882
Query: 184 P--PPGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G GPP PG +GPP G P G P P + P G RG
Sbjct: 883 PKGARGAQGPPGATGFPGAAGRVGPPGS--NGNPGPPGPPGPSGKDGPKGARG 933
Score = 52.8 bits (125), Expect = 3e-07
Identities = 55/157 (35%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 84 GPPPKDTGIARVP-LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
GPP G A P L G AG PG G P+G P P GLAG VG P Q+
Sbjct: 936 GPP----GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR-- 989
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP--------PPG 194
RG + GAP G GPP P+G PPG+ GP PG
Sbjct: 990 --GERGFPGLPGPSGEPGKQGAPG--ASGDRGPPGPVG----PPGLTGPAGEPGREGSPG 1041
Query: 195 MRPPMG--PPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G G+ RG + PG P PPG G
Sbjct: 1042 ADGPPGRDGAAGVKGDRGETGAVGAPG-APGPPGSPG 1077
Score = 52.4 bits (124), Expect = 3e-07
Identities = 52/176 (29%), Positives = 59/176 (33%), Gaps = 35/176 (19%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPP AG AG G G P G P GL GP+ GP
Sbjct: 743 QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI----GPPGPAG 798
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP----------------- 185
+G V A +A GAP + G GPP P G PP
Sbjct: 799 ANGEKGEVGPPGPAGSAGARGAPGE--RGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQ 856
Query: 186 ------PGMMGP--PPGMRPPMG--PPMGIPPGRGTP--MGMPPPGMRPPPPGMRG 229
PG GP PG + P G P G +G P G P R PPG G
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNG 912
Score = 51.2 bits (121), Expect = 7e-07
Identities = 51/149 (34%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP G +G PG G PAG P + G GP G P Q +
Sbjct: 918 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 977
Query: 144 PQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMG-RGAPPPGMMGPPPGMRPPMGP 201
Q RG V G P PG+ G P G RG PPG +G PPG+ P G
Sbjct: 978 GQ-RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--PPGPVG-PPGLTGPAG- 1032
Query: 202 PMGIPPGR-GTPMGMPPPGMRPPPPGMRG 229
PGR G+P PPG R G++G
Sbjct: 1033 ----EPGREGSPGADGPPG-RDGAAGVKG 1056
Score = 50.8 bits (120), Expect = 1e-06
Identities = 59/185 (31%), Positives = 68/185 (36%), Gaps = 49/185 (26%)
Query: 83 EGPPPKD-----------TGIARVPLA-GAAGGPG----IGRAAGRGIPAGVPMPQAPAG 126
+GPP +D TG P A G G PG G+ RG AG P P+G
Sbjct: 1043 DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG-EAGAQGPMGPSG 1101
Query: 127 LAGPVRGVGGPSQ------QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
AG RG+ GP + P RG + G P P G G P G
Sbjct: 1102 PAG-ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG--PSGDQGASGPAG 1158
Query: 181 RGAP--PPGMMGPP--------PGMRPPMGP--------PMGIPPGRGTPMGMPPPGMRP 222
P PPG +GP PG P GP P G P G P PPG P
Sbjct: 1159 PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP---GPPG--P 1213
Query: 223 PPPGM 227
P PG+
Sbjct: 1214 PGPGI 1218
Score = 49.7 bits (117), Expect = 2e-06
Identities = 52/172 (30%), Positives = 56/172 (32%), Gaps = 43/172 (25%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG--------------------- 135
L G G G AAG G P P P G GP G G
Sbjct: 328 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG 387
Query: 136 --GPSQQVMTPQGRGTVAAA------------AAAATASIAGAPTQYPPGRGGPPPPMGR 181
GP + TP G A+ +A IAGAP PG GPP P G
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF--PGPRGPPGPQGA 445
Query: 182 GAP--PPGMMGPP--PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P P G G P G + GP PG P G P P G RG
Sbjct: 446 TGPLGPKGQTGEPGIAGFKGEQGPKG--EPGPAGPQGAPGPAGEEGKRGARG 495
Score = 49.7 bits (117), Expect = 2e-06
Identities = 49/154 (31%), Positives = 57/154 (37%), Gaps = 41/154 (26%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG+ G+ G P PAG AG RG A +
Sbjct: 621 GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE----------------RGEQGAPGPSGF 664
Query: 159 ASIAGAPTQYPPGRGGPPPPMG--RGAPPPGMMGPP-----PGMRPPMGP-----PMGIP 206
+ G P PPG GG P G A PG++GP PG R G P G+P
Sbjct: 665 QGLPGPPG--PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 722
Query: 207 --PGRGTPMGMP----PPGMRPPP-----PGMRG 229
PG P G PPG + PP PG RG
Sbjct: 723 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 756
Score = 48.9 bits (115), Expect = 4e-06
Identities = 55/178 (30%), Positives = 62/178 (34%), Gaps = 33/178 (18%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--------VRGV 134
EG P D R AG G G A G G P PAG G +G
Sbjct: 1037 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096
Query: 135 GGPS-----QQVMTPQG-RGTVAAAAAAATASIAG----APTQYPPGRGGPPPPMGRGAP 184
GPS + + PQG RG A + G Q PG GP G P
Sbjct: 1097 MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1156
Query: 185 --------PPGMMGP-----PPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
PPG +GP G+ P+GPP P GR G P P PPG G
Sbjct: 1157 AGPSGPRGPPGPVGPSGKDGANGIPGPIGPPG--PRGRSGETGPAGPPGNPGPPGPPG 1212
Score = 48.5 bits (114), Expect = 5e-06
Identities = 50/164 (30%), Positives = 57/164 (34%), Gaps = 34/164 (20%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--------------------VRGVGGPS 138
GAAG PG AG G P P GL GP G+ GP
Sbjct: 639 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 698
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPP-----PGMMGP- 191
+ P RG+ A + G P T P G GP P G PP PG G
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 758
Query: 192 ----PPGMRPPMGP--PMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G R +G P G PG+ G+ P P P G G
Sbjct: 759 GIAGPKGDRGDVGEKGPEG-APGKDGGRGLTGPIGPPGPAGANG 801
Score = 48.1 bits (113), Expect = 6e-06
Identities = 59/187 (31%), Positives = 63/187 (33%), Gaps = 50/187 (26%)
Query: 92 IARVPLAGAAGGPGIGRAAGRGI-------PAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
I LA A+G PG G P G P PQ PAG GP RG G + P
Sbjct: 88 ICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP-RGDRGDKGEKGAP 146
Query: 145 QGRGTVAAAAAAATASIAGAP-TQYPPGRG------------------------GPPPPM 179
RG G P PPG G GP PM
Sbjct: 147 GPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 206
Query: 180 G-RGAP-------PPGMMGPP-----PGMRPPMGP--PMGIP--PGRGTPMGMPPPGMRP 222
G RG P P G G P PG+ PMGP P G P PG G P
Sbjct: 207 GPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 266
Query: 223 PPPGMRG 229
PPG +G
Sbjct: 267 GPPGPQG 273
Score = 48.1 bits (113), Expect = 6e-06
Identities = 49/141 (34%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G AG PG+ +G G P P P GL G RG GP A AA A
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGE-RGRTGP--------------AGAAGAR 344
Query: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGP--PPGMRPPMGP--PMGIPPGR 209
+ PG GPP P+G P PG G P G R P G P G P
Sbjct: 345 GN------DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP--- 395
Query: 210 GTPMGMPPPGMRPPPPGMRGL 230
GTP G P P PG G+
Sbjct: 396 GTP-GSPGPAGASGNPGTDGI 415
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/157 (30%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG G+ P+G P G GP +G G + P +G A
Sbjct: 561 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP-QGARGQPGVMGFPGPKGANGEPGKAGE 619
Query: 159 ASIAGAP-------TQYPPGRGGPPPPMG-------RGAPPP----GMMGP--PPGMRPP 198
+ GAP G GPP P G +GAP P G+ GP PPG
Sbjct: 620 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK 679
Query: 199 MGPPMGIPPGRGTPMGMPPPGMRPPP-----PGMRGL 230
G G+P G P + P G R P PG +GL
Sbjct: 680 PG-DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 715
Score = 45.8 bits (107), Expect = 3e-05
Identities = 54/161 (33%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 86 PPKDTGIARVPLAGA----AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ- 140
PP G +AG AGG +G G P G P PAG GP G P +
Sbjct: 172 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 231
Query: 141 ---VMTPQG-RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAP-PPGMMGPP-- 192
V P G RG AG P + G GPP P G RG P PG+ G
Sbjct: 232 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK--AGERGPPGPQGARGFPGTPGLPGVKGH 289
Query: 193 ---PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230
PG+ G G P +G G P P P G RGL
Sbjct: 290 RGYPGLDGAKG-EAGAPGVKG-ESGSPGENGSPGPMGPRGL 328
Score = 38.5 bits (88), Expect = 0.005
Identities = 54/183 (29%), Positives = 59/183 (32%), Gaps = 37/183 (20%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP----- 137
EGPP + + G G G G P+G P Q G +G RG GP
Sbjct: 968 EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD-RGPPGPVGPPG 1026
Query: 138 ------------SQQVMTPQGR-GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGR-- 181
S P GR G GAP PPG GP P G+
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Query: 182 ---GAPPPGMMGP--PPGMRPPMGP--PMGIPPGRGTPMGMPPPGMR--------PPPPG 226
A G MGP P G R GP P G G P G R P PPG
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG 1146
Query: 227 MRG 229
G
Sbjct: 1147 PSG 1149
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-----VRGVGGPSQQVMTPQGRGTVA 151
L G G PG G PAG P+ P G GP G+ GP + P RG
Sbjct: 1138 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP---IGPPGPRGR-- 1192
Query: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
+ AG P PG GPP P G G G P + P
Sbjct: 1193 ----SGETGPAGPPGN--PGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
Score = 37.0 bits (84), Expect = 0.014
Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 47/159 (29%)
Query: 82 VEGP--PPKDTGIARVP----LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG 135
++GP P D G A P L G G G+ G P+G PAG +GP RG
Sbjct: 1108 IQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP-RGPP 1166
Query: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA------PPPGMM 189
GP + P G+ PG GPP P GR PP
Sbjct: 1167 GP----VGPSGKDGANGI----------------PGPIGPPGPRGRSGETGPAGPPGNP- 1205
Query: 190 GPPPGMRPPMGPPMGIPPGRGTPM----GMPPPGMRPPP 224
GPP GPP PPG G M G+ P P P
Sbjct: 1206 GPP-------GPPG--PPGPGIDMSAFAGLGPREKGPDP 1235
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 65.1 bits (157), Expect = 5e-11
Identities = 53/157 (33%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--VRGVGGPSQQV 141
GPP D G AG G A G P+G P PQ P G+ GP RG GP
Sbjct: 768 GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Query: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP--------PPGMMGPPP 193
P G V + PG GPP P G+ P PPG G P
Sbjct: 828 GFPGAAGRVGPPGSNGN-----------PGPPGPPGPSGKDGPKGARGDSGPPGRAG-EP 875
Query: 194 GMRPPMGPP-MGIPPGRGTPMGMPPPGMRPPPPGMRG 229
G++ P GPP PG P G P P P G+ G
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGP---PGPQGLAG 909
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/158 (32%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP + G G PGI G P G P P P G GP G G
Sbjct: 369 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGE 427
Query: 144 PQGRGTVAAAAAAATASIAGAPTQ----YPPGRGGPPPPMGRGAP-----PPGMMGPP-- 192
P G G + G P Q P G G P G P PG G P
Sbjct: 428 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGL 487
Query: 193 PGMRPPMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRG 229
PG R G P P G+ P G P RP PPG +G
Sbjct: 488 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG 525
Score = 55.8 bits (133), Expect = 3e-08
Identities = 58/173 (33%), Positives = 60/173 (34%), Gaps = 41/173 (23%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPG----------------IGRAAGRGIPA--GVPMPQAP 124
EG P KD G L G G PG G A RG P G P P
Sbjct: 707 EGAPGKDGGRG---LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP 763
Query: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGA 183
AG AGP G P G A AGAP Q P G GP P G
Sbjct: 764 AGFAGPPGADGQP----------GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTG 813
Query: 184 P--PPGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G GPP PG +GPP G P G P P + P G RG
Sbjct: 814 PKGARGAQGPPGATGFPGAAGRVGPPGS--NGNPGPPGPPGPSGKDGPKGARG 864
Score = 52.8 bits (125), Expect = 3e-07
Identities = 55/157 (35%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 84 GPPPKDTGIARVP-LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
GPP G A P L G AG PG G P+G P P GLAG VG P Q+
Sbjct: 867 GPP----GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR-- 920
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP--------PPG 194
RG + GAP G GPP P+G PPG+ GP PG
Sbjct: 921 --GERGFPGLPGPSGEPGKQGAPG--ASGDRGPPGPVG----PPGLTGPAGEPGREGSPG 972
Query: 195 MRPPMG--PPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G G+ RG + PG P PPG G
Sbjct: 973 ADGPPGRDGAAGVKGDRGETGAVGAPG-APGPPGSPG 1008
Score = 52.4 bits (124), Expect = 3e-07
Identities = 52/176 (29%), Positives = 59/176 (33%), Gaps = 35/176 (19%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPP AG AG G G P G P GL GP+ GP
Sbjct: 674 QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI----GPPGPAG 729
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP----------------- 185
+G V A +A GAP + G GPP P G PP
Sbjct: 730 ANGEKGEVGPPGPAGSAGARGAPGE--RGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQ 787
Query: 186 ------PGMMGP--PPGMRPPMG--PPMGIPPGRGTP--MGMPPPGMRPPPPGMRG 229
PG GP PG + P G P G +G P G P R PPG G
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNG 843
Score = 51.2 bits (121), Expect = 7e-07
Identities = 51/149 (34%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP G +G PG G PAG P + G GP G P Q +
Sbjct: 849 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 908
Query: 144 PQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMG-RGAPPPGMMGPPPGMRPPMGP 201
Q RG V G P PG+ G P G RG PPG +G PPG+ P G
Sbjct: 909 GQ-RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--PPGPVG-PPGLTGPAG- 963
Query: 202 PMGIPPGR-GTPMGMPPPGMRPPPPGMRG 229
PGR G+P PPG R G++G
Sbjct: 964 ----EPGREGSPGADGPPG-RDGAAGVKG 987
Score = 50.8 bits (120), Expect = 1e-06
Identities = 59/185 (31%), Positives = 68/185 (36%), Gaps = 49/185 (26%)
Query: 83 EGPPPKD-----------TGIARVPLA-GAAGGPG----IGRAAGRGIPAGVPMPQAPAG 126
+GPP +D TG P A G G PG G+ RG AG P P+G
Sbjct: 974 DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG-EAGAQGPMGPSG 1032
Query: 127 LAGPVRGVGGPSQ------QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
AG RG+ GP + P RG + G P P G G P G
Sbjct: 1033 PAG-ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG--PSGDQGASGPAG 1089
Query: 181 RGAP--PPGMMGPP--------PGMRPPMGP--------PMGIPPGRGTPMGMPPPGMRP 222
P PPG +GP PG P GP P G P G P PPG P
Sbjct: 1090 PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP---GPPG--P 1144
Query: 223 PPPGM 227
P PG+
Sbjct: 1145 PGPGI 1149
Score = 49.7 bits (117), Expect = 2e-06
Identities = 52/172 (30%), Positives = 56/172 (32%), Gaps = 43/172 (25%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG--------------------- 135
L G G G AAG G P P P G GP G G
Sbjct: 259 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG 318
Query: 136 --GPSQQVMTPQGRGTVAAA------------AAAATASIAGAPTQYPPGRGGPPPPMGR 181
GP + TP G A+ +A IAGAP PG GPP P G
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF--PGPRGPPGPQGA 376
Query: 182 GAP--PPGMMGPP--PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P P G G P G + GP PG P G P P G RG
Sbjct: 377 TGPLGPKGQTGEPGIAGFKGEQGPKG--EPGPAGPQGAPGPAGEEGKRGARG 426
Score = 49.7 bits (117), Expect = 2e-06
Identities = 49/154 (31%), Positives = 57/154 (37%), Gaps = 41/154 (26%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG+ G+ G P PAG AG RG A +
Sbjct: 552 GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE----------------RGEQGAPGPSGF 595
Query: 159 ASIAGAPTQYPPGRGGPPPPMG--RGAPPPGMMGPP-----PGMRPPMGP-----PMGIP 206
+ G P PPG GG P G A PG++GP PG R G P G+P
Sbjct: 596 QGLPGPPG--PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 653
Query: 207 --PGRGTPMGMP----PPGMRPPP-----PGMRG 229
PG P G PPG + PP PG RG
Sbjct: 654 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 687
Score = 48.9 bits (115), Expect = 4e-06
Identities = 55/178 (30%), Positives = 62/178 (34%), Gaps = 33/178 (18%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--------VRGV 134
EG P D R AG G G A G G P PAG G +G
Sbjct: 968 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027
Query: 135 GGPS-----QQVMTPQG-RGTVAAAAAAATASIAG----APTQYPPGRGGPPPPMGRGAP 184
GPS + + PQG RG A + G Q PG GP G P
Sbjct: 1028 MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1087
Query: 185 --------PPGMMGP-----PPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
PPG +GP G+ P+GPP P GR G P P PPG G
Sbjct: 1088 AGPSGPRGPPGPVGPSGKDGANGIPGPIGPPG--PRGRSGETGPAGPPGNPGPPGPPG 1143
Score = 48.5 bits (114), Expect = 5e-06
Identities = 50/164 (30%), Positives = 57/164 (34%), Gaps = 34/164 (20%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--------------------VRGVGGPS 138
GAAG PG AG G P P GL GP G+ GP
Sbjct: 570 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 629
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPP-----PGMMGP- 191
+ P RG+ A + G P T P G GP P G PP PG G
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 689
Query: 192 ----PPGMRPPMGP--PMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G R +G P G PG+ G+ P P P G G
Sbjct: 690 GIAGPKGDRGDVGEKGPEG-APGKDGGRGLTGPIGPPGPAGANG 732
Score = 48.1 bits (113), Expect = 6e-06
Identities = 49/141 (34%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G AG PG+ +G G P P P GL G RG GP A AA A
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGE-RGRTGP--------------AGAAGAR 275
Query: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGP--PPGMRPPMGP--PMGIPPGR 209
+ PG GPP P+G P PG G P G R P G P G P
Sbjct: 276 GN------DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP--- 326
Query: 210 GTPMGMPPPGMRPPPPGMRGL 230
GTP G P P PG G+
Sbjct: 327 GTP-GSPGPAGASGNPGTDGI 346
Score = 47.4 bits (111), Expect = 1e-05
Identities = 51/157 (32%), Positives = 54/157 (34%), Gaps = 43/157 (27%)
Query: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRG 173
P G P PQ PAG GP RG G + P RG G P PPG G
Sbjct: 49 PKGPPGPQGPAGEQGP-RGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLG 107
Query: 174 ------------------------GPPPPMG-RGAP-------PPGMMGPP-----PGMR 196
GP PMG RG P P G G P PG+
Sbjct: 108 GNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 167
Query: 197 PPMGP--PMGIP--PGRGTPMGMPPPGMRPPPPGMRG 229
PMGP P G P PG G P PPG +G
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG 204
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/157 (30%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG G+ P+G P G GP +G G + P +G A
Sbjct: 492 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP-QGARGQPGVMGFPGPKGANGEPGKAGE 550
Query: 159 ASIAGAP-------TQYPPGRGGPPPPMG-------RGAPPP----GMMGP--PPGMRPP 198
+ GAP G GPP P G +GAP P G+ GP PPG
Sbjct: 551 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK 610
Query: 199 MGPPMGIPPGRGTPMGMPPPGMRPPP-----PGMRGL 230
G G+P G P + P G R P PG +GL
Sbjct: 611 PG-DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 646
Score = 45.8 bits (107), Expect = 3e-05
Identities = 54/161 (33%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 86 PPKDTGIARVPLAGA----AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ- 140
PP G +AG AGG +G G P G P PAG GP G P +
Sbjct: 103 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 162
Query: 141 ---VMTPQG-RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAP-PPGMMGPP-- 192
V P G RG AG P + G GPP P G RG P PG+ G
Sbjct: 163 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK--AGERGPPGPQGARGFPGTPGLPGVKGH 220
Query: 193 ---PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230
PG+ G G P +G G P P P G RGL
Sbjct: 221 RGYPGLDGAKG-EAGAPGVKG-ESGSPGENGSPGPMGPRGL 259
Score = 38.5 bits (88), Expect = 0.005
Identities = 54/183 (29%), Positives = 59/183 (32%), Gaps = 37/183 (20%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP----- 137
EGPP + + G G G G P+G P Q G +G RG GP
Sbjct: 899 EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD-RGPPGPVGPPG 957
Query: 138 ------------SQQVMTPQGR-GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGR-- 181
S P GR G GAP PPG GP P G+
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Query: 182 ---GAPPPGMMGP--PPGMRPPMGP--PMGIPPGRGTPMGMPPPGMR--------PPPPG 226
A G MGP P G R GP P G G P G R P PPG
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG 1077
Query: 227 MRG 229
G
Sbjct: 1078 PSG 1080
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-----VRGVGGPSQQVMTPQGRGTVA 151
L G G PG G PAG P+ P G GP G+ GP + P RG
Sbjct: 1069 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP---IGPPGPRGR-- 1123
Query: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
+ AG P PG GPP P G G G P + P
Sbjct: 1124 ----SGETGPAGPPGN--PGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
Score = 37.0 bits (84), Expect = 0.014
Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 47/159 (29%)
Query: 82 VEGP--PPKDTGIARVP----LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG 135
++GP P D G A P L G G G+ G P+G PAG +GP RG
Sbjct: 1039 IQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP-RGPP 1097
Query: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA------PPPGMM 189
GP + P G+ PG GPP P GR PP
Sbjct: 1098 GP----VGPSGKDGANGI----------------PGPIGPPGPRGRSGETGPAGPPGNP- 1136
Query: 190 GPPPGMRPPMGPPMGIPPGRGTPM----GMPPPGMRPPP 224
GPP GPP PPG G M G+ P P P
Sbjct: 1137 GPP-------GPPG--PPGPGIDMSAFAGLGPREKGPDP 1166
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 65.1 bits (157), Expect = 5e-11
Identities = 57/164 (34%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 83 EGP-----PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137
EGP PP G+ +P G G G G+ P G P P+ P+G G G GP
Sbjct: 1215 EGPRGFPGPPGPVGLQGLP--GPPGEKGETGDVGQMGPPGPPGPRGPSGAPG-ADGPQGP 1271
Query: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-----------GAPPP 186
P G G A AG P PG GGPP P G A PP
Sbjct: 1272 ------PGGIGNPGAVGEKGEPGEAGEPGL--PGEGGPPGPKGERGEKGESGPSGAAGPP 1323
Query: 187 GMMGPPPGMRPPMGP-PMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
G GPP P P P+G P G P G P P + PPG +G
Sbjct: 1324 GPKGPPGDDGPKGSPGPVGFPGDPGPP-GEPGPAGQDGPPGDKG 1366
Score = 55.5 bits (132), Expect = 4e-08
Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVR--------GV 134
EG PP G G G G AAG P G P P G GPV G
Sbjct: 1298 EGGPPGPKGER-----GEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGE 1352
Query: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
GP+ Q P +G + G P PPG+ GPP P G P G G
Sbjct: 1353 PGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAG----PEGRQGEK- 1407
Query: 194 GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230
G + G + PPG+ P+G +P P G+RG+
Sbjct: 1408 GAKGEAG--LEGPPGKTGPIGPQGAPGKPGPDGLRGI 1442
Score = 52.4 bits (124), Expect = 3e-07
Identities = 67/186 (36%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 83 EGPP----PKDTGIARVPLAGAAGGPGI-GRAAGRGIPA--------GVPMPQAPAG--- 126
EGPP P + R P AGAAG GI GR +G P G PQ PAG
Sbjct: 1077 EGPPGPPGPAGSPGERGP-AGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1135
Query: 127 LAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPP 185
L GPV G+ GP+ V P G G Q PPG GP P+G+ P
Sbjct: 1136 LQGPV-GLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQ--PG 1192
Query: 186 PGMMGPPPGMRPPMG--------PPMGI--PPGRGTPMGMP-PPG----------MRPP- 223
P PG R G P G PPG G+P PPG M PP
Sbjct: 1193 PSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPG 1252
Query: 224 PPGMRG 229
PPG RG
Sbjct: 1253 PPGPRG 1258
Score = 52.4 bits (124), Expect = 3e-07
Identities = 50/160 (31%), Positives = 60/160 (37%), Gaps = 19/160 (11%)
Query: 82 VEGPPPKDTGIARVPLAGAAGGPGI----GRAAGRGIPA-----GVPMPQAPAGLAGPVR 132
+EGPP K I G G G+ G +G+P G P P P GL G ++
Sbjct: 1415 LEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPG-LK 1473
Query: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP- 191
G GP + P G + G P P G GP G P G +GP
Sbjct: 1474 GDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPG--PQGSSGPKGEQGI-TGPSGPIGPP 1530
Query: 192 -PPGMRPPMGPP----MGIPPGRGTPMGMPPPGMRPPPPG 226
PPG+ P GP P G G P P P PPG
Sbjct: 1531 GPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPG 1570
Score = 52.0 bits (123), Expect = 4e-07
Identities = 54/156 (34%), Positives = 61/156 (39%), Gaps = 16/156 (10%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP D G G PG G P G P P P G+ G + G GP V
Sbjct: 655 GPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTG-MDGQPGPKGNV-G 712
Query: 144 PQGR-GTVAAAAAAATASIAGAPTQYPPGRGGPPP---PMGRGAPP--PGMMGPP--PGM 195
PQG G + G P G GPP P+G+ P PG GPP PG
Sbjct: 713 PQGEPGPPGQQGNPGAQGLPG-----PQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGK 767
Query: 196 RPPMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRGL 230
P G G PPG P+G P P G+RGL
Sbjct: 768 EGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGL 803
Score = 52.0 bits (123), Expect = 4e-07
Identities = 52/162 (32%), Positives = 62/162 (38%), Gaps = 22/162 (13%)
Query: 83 EGPP-----PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPV------ 131
+GPP P D G+ GA G G G PAG P + PAG AGP+
Sbjct: 1050 DGPPGLRGFPGDRGLPGP--VGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRP 1107
Query: 132 --RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP--PPG 187
+G GP+ + P +G A G P P G GPP G PG
Sbjct: 1108 GPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPG--PAGPVGPPGEDGDKGEIGEPG 1165
Query: 188 MMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
G G + GPP P G P+G P P PG RG
Sbjct: 1166 QKG-SKGDKGEQGPPG--PTGPQGPIGQPGPSGADGEPGPRG 1204
Score = 51.6 bits (122), Expect = 6e-07
Identities = 58/179 (32%), Positives = 68/179 (37%), Gaps = 49/179 (27%)
Query: 93 ARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPV-----RGVGGPSQQVMTPQGR 147
AR+ L G AG G+ GR P G P G G V RGV GP P R
Sbjct: 553 ARLALRGPAGPMGL---TGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRR 609
Query: 148 GTVAAAAAAATAS------------IAGAPTQY----PPGRGGPPPPMG----------- 180
G + A +AG P + PG GPP P G
Sbjct: 610 GRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEV 669
Query: 181 --RGAP----PPGMMGP--PPGMRPPMGPPMGIP--PGRGTPMGMPPPGMRPPPPGMRG 229
RG P P G++GP PPG P GPP G+ G+ P G P P PPG +G
Sbjct: 670 GPRGLPGEPGPRGLLGPKGPPG---PPGPP-GVTGMDGQPGPKGNVGPQGEPGPPGQQG 724
Score = 51.2 bits (121), Expect = 7e-07
Identities = 49/145 (33%), Positives = 55/145 (37%), Gaps = 32/145 (22%)
Query: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
PP D G P G G PG P G P P P G GP G GP
Sbjct: 1361 PPGDKGDDGEP--GQTGSPG---------PTGEPGPSGPPGKRGP-PGPAGP-------- 1400
Query: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GAPPPGMMGPPPGMRPPMGPPMG 204
G A A + G PPG+ GP P G G P P + PG G P G
Sbjct: 1401 -EGRQGEKGAKGEAGLEG-----PPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP-G 1453
Query: 205 IPPGRGTPMGMPPPGMRPPPPGMRG 229
P G P M PPG+ PG++G
Sbjct: 1454 SPGPDGPPGPMGPPGL----PGLKG 1474
Score = 49.7 bits (117), Expect = 2e-06
Identities = 50/145 (34%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 86 PPKDTGIARVP-LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG--------G 136
PP + G+ + G G PG G+ P G+ GL GPV +G G
Sbjct: 1022 PPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPG 1081
Query: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAPPPGMMGPP-PG 194
P +P RG A AA I G PG GPP P G +GA PG GP P
Sbjct: 1082 PPGPAGSPGERG---PAGAAGPIGIPGR-----PGPQGPPGPAGEKGA--PGEKGPQGPA 1131
Query: 195 MRPPMGPPMGIPPGRGTPMGMPPPG 219
R + P+G+ PG P+G PPG
Sbjct: 1132 GRDGLQGPVGL-PGPAGPVG--PPG 1153
Score = 48.1 bits (113), Expect = 6e-06
Identities = 55/196 (28%), Positives = 64/196 (32%), Gaps = 51/196 (26%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+G P I G G PG+ G P G P + P G G +G GP +
Sbjct: 729 QGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGG-QGPPGPQGPIG 787
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQ----------------------YPPGRGGPPPPMG 180
P RG A G + P G GP P G
Sbjct: 788 YPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKG 847
Query: 181 RGAP--PPGMMGPP--------------PGMRPPMGPPMGIP---------PGRGTPMGM 215
RG P PG +GPP PG + P G +G P GRGTP
Sbjct: 848 RGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKG-SIGFPGFPGANGEKGGRGTPGKP 906
Query: 216 PPPGMRPP--PPGMRG 229
P G R P P G RG
Sbjct: 907 GPRGQRGPTGPRGERG 922
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/145 (31%), Positives = 48/145 (33%), Gaps = 18/145 (12%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG--------GPSQQVMTPQGRGTV 150
G G G GRG P G P P P G G + G GP + P G
Sbjct: 835 GPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGAN 894
Query: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP-----PPGMMGPPPGMRPPMGPPMGI 205
T G P G+ GP P G P PG G G P P
Sbjct: 895 GEKGGRGTPGKPG-----PRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERG 949
Query: 206 PPGRGTPMGMPPPGMRPPPPGMRGL 230
P G P G P P P PPG GL
Sbjct: 950 PNGPQGPTGFPGPKGPPGPPGKDGL 974
Score = 45.4 bits (106), Expect = 4e-05
Identities = 55/188 (29%), Positives = 62/188 (32%), Gaps = 58/188 (30%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ----------------VM 142
G AG PG G P G P P+ P G G G P Q+ V+
Sbjct: 940 GPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVV 999
Query: 143 TPQG-RGTVAAAAAAATASIAGAPTQYP-------------------PGRGGPPP----P 178
PQG G G P + PG+ GPP P
Sbjct: 1000 GPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
Query: 179 MGRGAP-------------PPGMMGP--PPGMRPPMGP--PMGIPPGRGTPMGMPPPGMR 221
RG P PPG GP PG R P G P+GI PGR P G P P
Sbjct: 1060 GDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGI-PGRPGPQGPPGPAGE 1118
Query: 222 PPPPGMRG 229
PG +G
Sbjct: 1119 KGAPGEKG 1126
Score = 44.3 bits (103), Expect = 9e-05
Identities = 57/187 (30%), Positives = 65/187 (34%), Gaps = 81/187 (43%)
Query: 102 GGPGIGRAAGRGIPA---------GVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
GGP G +G PA G P P+ PAGL GP G GP+ QV P RG
Sbjct: 446 GGPR-GEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGP-PGTMGPTGQVGDPGERG---- 499
Query: 153 AAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM--------GPPPGMRPPM----- 199
PPGR G P G PP M+ G G + PM
Sbjct: 500 ----------------PPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQE 543
Query: 200 ---------------GP--PMGI--------PPGRGTPMGMP-------PPGMRPPP--- 224
GP PMG+ PPG G G P P G++ PP
Sbjct: 544 SQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPA 603
Query: 225 --PGMRG 229
PG RG
Sbjct: 604 GKPGRRG 610
Score = 41.6 bits (96), Expect = 6e-04
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 31/169 (18%)
Query: 80 MTVEGPPPKDTGIARVPLAGAAGGPG--IGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137
M +EGPP + G A +P GP +G RG P +P A GL GP P
Sbjct: 465 MLIEGPPGPE-GPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGAD-GLPGP------P 516
Query: 138 SQQVMTP---QGRGTVAAAAAAATASIAGAPTQYPPGR---GGPPPPMGRGAPPPGMMGP 191
+M P G G + +A + A R GP PMG PG +GP
Sbjct: 517 GTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGL-TGRPGPVGP 575
Query: 192 P--------PGMRPPMGPPMGI--PPGRGTPMGMPPPGMRPPPPGMRGL 230
P PG P G P G+ PPG P G P R G RG+
Sbjct: 576 PGSGGLKGEPGDVGPQG-PRGVQGPPG---PAGKPGRRGRAGSDGARGM 620
Score = 37.4 bits (85), Expect = 0.011
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 97 LAGAAGGPGI-GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAA 155
L G G PG G RG+P PQ +G G +G+ GPS + P G
Sbjct: 1487 LIGLIGPPGEQGEKGDRGLPG----PQGSSGPKGE-QGITGPSGPIGPPGPPGLPGPPGP 1541
Query: 156 AATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
+G PT P G G P P G PP ++ P P
Sbjct: 1542 KGAKGSSG-PTG-PKGEAGHPGPPGPPGPPGEVIQPLP 1577
Score = 33.9 bits (76), Expect = 0.12
Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 171 GRGGPPPPMGRGAPP----PGMM-GPPPGMRPPMGPPMGIPPGRGTPMG-MPPPGMRPPP 224
G GGP G+ P PGM+ PPG P G P PPG P G + PG R PP
Sbjct: 444 GIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPG--PPGTMGPTGQVGDPGERGPP 501
Query: 225 -----PGMRGL 230
PG GL
Sbjct: 502 GRPGLPGADGL 512
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 64.7 bits (156), Expect = 6e-11
Identities = 51/154 (33%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PPP+D+ V A GPG G PA P A +G G
Sbjct: 101 PPPQDSSKPVV-----AQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG----------- 144
Query: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGP-PPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
G G A T++ GAP PP G P PP G PPP P PG P GP
Sbjct: 145 SGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGP 204
Query: 204 GIPPGRGTPMGMPP--------PGMRPPPPGMRG 229
G P G P G P PG P PP G
Sbjct: 205 GGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGG 238
Score = 44.7 bits (104), Expect = 7e-05
Identities = 48/157 (30%), Positives = 54/157 (34%), Gaps = 27/157 (17%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G GG G G R P G+ + Q G GP G GP + P
Sbjct: 20 GGGGGRG-GLHDFRSPPPGMGLNQN-RGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQP 77
Query: 159 ASIAGAPTQYPPG------RGGPPPPMGRG--------APPPGMMGPPPGMR--PPMGPP 202
P Q PP + PPPP P PG+ PP PP PP
Sbjct: 78 PPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPP 137
Query: 203 M-GIPPGRG---TPMGMP-----PPGMRPPPPGMRGL 230
G PPG G TP P PPG PP P G+
Sbjct: 138 TSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGV 174
Score = 39.3 bits (90), Expect = 0.003
Identities = 40/120 (33%), Positives = 43/120 (35%), Gaps = 32/120 (26%)
Query: 79 SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138
S V PP+ G P A GPG + G G P G MP GP G GGP
Sbjct: 171 SSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP------GGPKPG-GGPG 223
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPP----GMMGPPPG 194
+ TP G PP RGG P GR PP GPPPG
Sbjct: 224 --LSTPGGH-------------------PKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPG 262
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 64.3 bits (155), Expect = 8e-11
Identities = 59/164 (35%), Positives = 68/164 (41%), Gaps = 31/164 (18%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI +P AG P G IP P+P A L P+ G G P +
Sbjct: 924 PPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPG 983
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPM--GRGAPPP------GMMGPPP-- 193
G A G P P PG G PPPP G G PPP G+ PPP
Sbjct: 984 AGIPPPPPLPGA------GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1037
Query: 194 --GMRPPMGPPM---GIPPGRGTP-MGMPPP------GMRPPPP 225
G+ PP PP+ GIPP P G+PPP G+ PPPP
Sbjct: 1038 GAGIPPP--PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1079
Score = 62.4 bits (150), Expect = 3e-10
Identities = 58/166 (34%), Positives = 65/166 (39%), Gaps = 26/166 (15%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI P AG P G GIP P+P A P+ G G P +
Sbjct: 1034 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1093
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPM--GRGAPPP------GMMGPPPGM 195
G G P P PG G PPPP G G PPP G+ PPP
Sbjct: 1094 AGIPPPPPLPGV------GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1147
Query: 196 R-----PPMGPPMGIP-----PGRGTPMGMPPPGMR-PPPPGMRGL 230
R PP P GIP PG G P P PG+ PPPP + G+
Sbjct: 1148 RVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGV 1193
Score = 61.2 bits (147), Expect = 7e-10
Identities = 58/164 (35%), Positives = 66/164 (40%), Gaps = 42/164 (25%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI P AG P G GIP P+P A P+ G G P +
Sbjct: 957 PPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1016
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPM--GRGAPPP------GMMGPPP-- 193
AG P P PG G PPPP G G PPP G+ PPP
Sbjct: 1017 -----------------AGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1059
Query: 194 --GMRPPMGPPM---GIPPGRGTP-MGMPPP------GMRPPPP 225
G+ PP PP+ GIPP P G+PPP G+ PPPP
Sbjct: 1060 GAGIPPP--PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1101
Score = 60.5 bits (145), Expect = 1e-09
Identities = 59/164 (35%), Positives = 68/164 (41%), Gaps = 42/164 (25%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI P AG + G GIP P+P A P+ G G P + P
Sbjct: 913 PPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIP----LPP 968
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPM--GRGAPPP------GMMGPPP-- 193
G AG P P PG G PPPP G G PPP G+ PPP
Sbjct: 969 PLPG-------------AGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1015
Query: 194 --GMRPPMGPPM---GIPPGRGTP-MGMPPP------GMRPPPP 225
G+ PP PP+ GIPP P G+PPP G+ PPPP
Sbjct: 1016 GAGIPPP--PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1057
Score = 57.0 bits (136), Expect = 1e-08
Identities = 60/172 (34%), Positives = 70/172 (40%), Gaps = 39/172 (22%)
Query: 77 LVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGG 136
L S + PPP G +P P G GIP P+P A P+ G G
Sbjct: 891 LPSTAIPQPPPLQ-GTEMLP-------PPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGI 942
Query: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPM--GRGAPPP------G 187
P + AA AG P P PG G PPPP G G PPP G
Sbjct: 943 PPPPPLPG------AAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 996
Query: 188 MMGPPP----GMRPPMGPPM---GIPPGRGTP-MGMPPP------GMRPPPP 225
+ PPP G+ PP PP+ GIPP P G+PPP G+ PPPP
Sbjct: 997 IPPPPPLPGAGIPPP--PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1046
Score = 54.7 bits (130), Expect = 7e-08
Identities = 52/152 (34%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI P G P G GIP P+P A P+ GVG P +
Sbjct: 1133 PPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPG 1192
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
G A G P P PG G PP P PPPG PPP + P GPP+
Sbjct: 1193 VGIPPPPPLPGA------GIPPPPPLPGMGIPPAP-APPLPPPGTGIPPPPLLPVSGPPL 1245
Query: 204 GIPPGRGTPMGMPPP---GMRPP--PPGMRGL 230
G T +P P G PP P G+ GL
Sbjct: 1246 LPQVGSST---LPTPQVCGFLPPPLPSGLFGL 1274
Score = 48.5 bits (114), Expect = 5e-06
Identities = 42/132 (31%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 114 IPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPP--- 170
IP+ P+P + + P G+ P + T+ + A + G PP
Sbjct: 855 IPSPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPP 914
Query: 171 --GRGGPPPPMGRGA------PPPGMMGPPPGMRP----PMGPPMGIPPGRGTPMGMPPP 218
G G PPPP GA P PG PPP P P PP+ PG G P+ P P
Sbjct: 915 LPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPL---PGAGIPLPPPLP 971
Query: 219 GMR-PPPPGMRG 229
G PPPP + G
Sbjct: 972 GAGIPPPPPLPG 983
Score = 46.2 bits (108), Expect = 2e-05
Identities = 53/172 (30%), Positives = 68/172 (39%), Gaps = 35/172 (20%)
Query: 79 SMTVEGPPPKDTGIARVPLAGAAGG-PGIGRAAGRGIPA-GVPMPQAPAGLAGPVRGVGG 136
S + PPP +P ++ PG+G P G+ +P P+ + G
Sbjct: 852 SCNIPSPPP-------LPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQG 904
Query: 137 PSQQVMTPQGRGTVAAAAAAATASIAGA---PTQYPPGRGGPPPPMGRGA---PPPGMMG 190
M P + A + GA P PG G PPPP GA PPP + G
Sbjct: 905 TE---MLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPG 961
Query: 191 -----PPP----GMRPPMG-PPMGIPPGRGTP-MGMPPP------GMRPPPP 225
PPP G+ PP P GIPP P G+PPP G+ PPPP
Sbjct: 962 AGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1013
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 63.9 bits (154), Expect = 1e-10
Identities = 58/160 (36%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 83 EGPPPKDTGIARVPLA----GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138
E PP G A P A GA G PG A G AG P P PAG GP+ VG P
Sbjct: 804 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKG---DAGPPGPAGPAGPPGPIGNVGAPG 860
Query: 139 QQVMTPQGRGTVAAAAAAATASIAG-APTQYPPGRGGPPPPMG-----RGAPPPGMMGPP 192
+ RG+ A AG P G GPP P G G P G GP
Sbjct: 861 AK----GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA 916
Query: 193 --PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230
PG P GPP G +G+P G P P PG +G+
Sbjct: 917 GRPGEVGPPGPP-GPAGEKGSP-GADGPAGAPGTPGPQGI 954
Score = 62.8 bits (151), Expect = 2e-10
Identities = 57/162 (35%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 86 PPKDTGIARVP----LAGAAGGPGIGRAAGRGIPAGV---PMPQAPAGLAGPVRGVGGPS 138
PP TG A P GA G G G P GV P P PAG AGP G
Sbjct: 333 PPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG 392
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGA-PTQYPPGRGGPPPPMGRGAPP--PGMMGP---- 191
Q P +G A A GA P G GGPP P G P PG G
Sbjct: 393 Q----PGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448
Query: 192 ----PPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G++ P GP G+ G P P P PPG RG
Sbjct: 449 GEPGPVGVQGPPGP--AGEEGKRGARGEPGPTGLPGPPGERG 488
Score = 57.8 bits (138), Expect = 8e-09
Identities = 58/181 (32%), Positives = 67/181 (37%), Gaps = 51/181 (28%)
Query: 98 AGAAGGPGIGRAAG-RGIP-----AGVPMPQAPAGLAGP-----------VRGVG---GP 137
AGA G PG A G +G+P AG+P P+ G AGP VRG+ GP
Sbjct: 712 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771
Query: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGP- 191
P +G + A GAP G GPP P G PP PG G
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGD--RGEPGPPGPAGFAGPPGADGQPGAKGEP 829
Query: 192 ----------PPGMRPPMGPP-----MGIPPGRGTPMGMPPPGM--------RPPPPGMR 228
PPG P GPP +G P +G PPG R PPG
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Query: 229 G 229
G
Sbjct: 890 G 890
Score = 57.0 bits (136), Expect = 1e-08
Identities = 57/173 (32%), Positives = 69/173 (39%), Gaps = 39/173 (22%)
Query: 82 VEGPP--------------PKDTGIARVPLAGAAGGPGIGRAAGRGIPA--GVPMPQAPA 125
V+GPP P TG+ P G GGPG RG P GV P+ PA
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPP--GERGGPG-----SRGFPGADGVAGPKGPA 508
Query: 126 GLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAP 184
G RG GP+ +P G A + G+P + P G+ GPP P G+
Sbjct: 509 G----ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGR 564
Query: 185 PPGMMGPPPGMRPPMGPPMGIP--------PGRGTPMGMPPPGMRPPPPGMRG 229
P G G PPG R G MG P PG+ G+P P P G G
Sbjct: 565 P-GPPG-PPGARGQAG-VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Score = 55.1 bits (131), Expect = 5e-08
Identities = 59/175 (33%), Positives = 65/175 (37%), Gaps = 45/175 (25%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAG----------------RGIPA--GVPMPQAP 124
+G P KD G+ L G G PG A G RG P G P P P
Sbjct: 754 DGSPGKD-GVRG--LTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGP 810
Query: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GA 183
AG AGP G P +G A A A G P G GPP P+G GA
Sbjct: 811 AGFAGPPGADGQPG-------AKGEPGDAGAKGDAGPPG-----PAGPAGPPGPIGNVGA 858
Query: 184 P----PPGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
P G GPP PG +GPP P G P G P P + G RG
Sbjct: 859 PGAKGARGSAGPPGATGFPGAAGRVGPPG--PSGNAGPPGPPGPAGKEGGKGPRG 911
Score = 53.5 bits (127), Expect = 1e-07
Identities = 50/143 (34%), Positives = 56/143 (39%), Gaps = 17/143 (11%)
Query: 98 AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT-PQGR-GTVAAAAA 155
AG G G AAGR P G P G GP GG + T P GR G V
Sbjct: 868 AGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGP 927
Query: 156 AATASIAGAP-TQYPPGRGGPPPPMGRGAPPPGMMGPP--------PGMRPPMGP----- 201
A G+P P G G P P G A G++G P PG+ P G
Sbjct: 928 PGPAGEKGSPGADGPAGAPGTPGPQGI-AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
Query: 202 PMGIPPGRGTPMGMPPPGMRPPP 224
P G RG P M PPG+ PP
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPP 1009
Score = 52.4 bits (124), Expect = 3e-07
Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 16/143 (11%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
GA G PGI A G G PQ P G GP G P P +G A
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG----APGSKGDTGAKGEPGP 453
Query: 159 ASIAGAP----TQYPPGRGGPPPPMGRGAPP-----PGMMGPP--PGMRPPMGPP-MGIP 206
+ G P + G G P P G PP PG G P G+ P GP
Sbjct: 454 VGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGS 513
Query: 207 PGRGTPMGMPPPGMRPPPPGMRG 229
PG P G P RP G+ G
Sbjct: 514 PGPAGPKGSPGEAGRPGEAGLPG 536
Score = 52.0 bits (123), Expect = 4e-07
Identities = 75/211 (35%), Positives = 84/211 (39%), Gaps = 44/211 (20%)
Query: 41 ILCD---CDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP--PPKDTGIARV 95
+LCD CDE KN AE E + E+ G P DTG R
Sbjct: 68 VLCDDVICDE-----TKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTG-PRG 121
Query: 96 PLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAA 155
P G AG PG G+ G+P P P G GP G+GG PQ
Sbjct: 122 P-RGPAGPPGRDGIPGQ---PGLPGPPGPPGPPGPP-GLGGN----FAPQ---LSYGYDE 169
Query: 156 AATASIAGAPTQYPPG-RGGPPPPMGRGAP-PPGMMGPP-----PGMRPPMGP--PMGIP 206
+T I+ P G RG P PP GAP P G GPP PG PMGP P G P
Sbjct: 170 KSTGGISVPGPMGPSGPRGLPGPP---GAPGPQGFQGPPGEPGEPGASGPMGPRGPPG-P 225
Query: 207 PGR-------GTPMGMPPPGMRPPPPGMRGL 230
PG+ G P G P P P G RGL
Sbjct: 226 PGKNGDDGEAGKP-GRPGERGPPGPQGARGL 255
Score = 50.1 bits (118), Expect = 2e-06
Identities = 59/177 (33%), Positives = 66/177 (37%), Gaps = 33/177 (18%)
Query: 74 GENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRG 133
G N G K TG VP GP +G + RG+P G P P G GP
Sbjct: 156 GGNFAPQLSYGYDEKSTGGISVP------GP-MGPSGPRGLP-GPPGAPGPQGFQGPPGE 207
Query: 134 VGGPSQQVMTPQG-RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAPP----PG 187
G P P G RG AG P + PG GPP P G RG P PG
Sbjct: 208 PGEPGAS--GPMGPRGPPGPPGKNGDDGEAGKPGR--PGERGPPGPQGARGLPGTAGLPG 263
Query: 188 MMGPP-----PGMRPPMGP--PMGIP--------PGRGTPMGMPPPGMRPPPPGMRG 229
M G G + GP P G P PG+ P G+P RP PG G
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320
Score = 49.3 bits (116), Expect = 3e-06
Identities = 48/149 (32%), Positives = 54/149 (36%), Gaps = 19/149 (12%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-----------VRGVGGPSQQVMTPQGR 147
G G PG A G+ P G+P + G GP G GP+ P
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 148 GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPP--PGMMGPPPGMRPPMGPP-- 202
G V A A G+ Q G GPP P G P PG G PG + G P
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG-QPGAKGANGAPGI 405
Query: 203 MGIP--PGRGTPMGMPPPGMRPPPPGMRG 229
G P PG P G PG P P G G
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSG 434
Score = 48.9 bits (115), Expect = 4e-06
Identities = 54/156 (34%), Positives = 61/156 (39%), Gaps = 25/156 (16%)
Query: 86 PPKDTGIARVPLAGAAGGPGI-GRAAGRGIP-----AGVPMPQAPAGLAGPVRGVGGPSQ 139
P +TG A P G G PG G A +G P AG P P G+AG VG P Q
Sbjct: 909 PRGETGPAGRP--GEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 966
Query: 140 Q-----VMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGR-GAP----PPGM 188
+ P G + + G P PPG GPP GR GAP PG
Sbjct: 967 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026
Query: 189 MGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPG 219
G P G P GPP G P G P + P G
Sbjct: 1027 DGSPGAKGDRGETGPAGPP-GAPGAPGAPGPVGPAG 1061
Score = 47.8 bits (112), Expect = 8e-06
Identities = 57/162 (35%), Positives = 62/162 (38%), Gaps = 24/162 (14%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAG-RGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
GPP + + G G PG A G RG P G Q P G AGP RG G
Sbjct: 650 GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFP-GERGVQGPPGPAGP-RGANG------ 701
Query: 143 TPQGRGTVAAAAAAATASIAGAP-TQYPPGRGG----PPPPMGRG-APPPGMMGPP---- 192
P G A A GAP Q PG G P P RG A P G G P
Sbjct: 702 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDG 761
Query: 193 -PGMRPPMGP--PMGIPPGRGT--PMGMPPPGMRPPPPGMRG 229
G+ P+GP P G P +G P G P PG RG
Sbjct: 762 VRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRG 803
Score = 47.8 bits (112), Expect = 8e-06
Identities = 60/182 (32%), Positives = 66/182 (36%), Gaps = 44/182 (24%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP---------------AGL 127
EG P + R GA G G AG G P P AG
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Query: 128 AGPVRGVG--GPSQQVMTPQG-RGTVAAAAAAATASIAG----APTQYPPGRGGPP---P 177
AGPV VG GP+ PQG RG I G + Q PPG G P
Sbjct: 1075 AGPVGPVGARGPA----GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130
Query: 178 PMGRGAP-----PPGMMGPP-----PGMRPPMGPPMGIPPGR---GTPMGMPPPGMRPPP 224
P G P PPG G P G+ P+GPP P GR P+G P P P P
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPG--PRGRTGDAGPVGPPGPPGPPGP 1188
Query: 225 PG 226
PG
Sbjct: 1189 PG 1190
Score = 47.8 bits (112), Expect = 8e-06
Identities = 57/176 (32%), Positives = 63/176 (35%), Gaps = 47/176 (26%)
Query: 89 DTGIARVPLA-GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG- 146
+TG A P A GA G PG AG+ G P PAG GPV G GP+ PQG
Sbjct: 1038 ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV-GARGPAG----PQGP 1092
Query: 147 RGTVAAAAAAATASIAG----------------------------APTQYPPGRGGPPPP 178
RG I G A + PPG G P
Sbjct: 1093 RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK 1152
Query: 179 MGRGAPPPGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPG----MRPPPP 225
G PG +GPP G P+GPP PPG P G P G P PP
Sbjct: 1153 DGLNG-LPGPIGPPGPRGRTGDAGPVGPPG--PPGPPGPPGPPSAGFDFSFLPQPP 1205
Score = 47.4 bits (111), Expect = 1e-05
Identities = 50/157 (31%), Positives = 55/157 (35%), Gaps = 28/157 (17%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--VRGVGGPSQQVMTPQGRGTVAAAA 154
L G +G PG +G G P P P GLAGP G G +P G+ A
Sbjct: 975 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Query: 155 AAATASIAGAP-TQYPPGRGGPPPPMGRGAP-----PPGMMGP--PPGMRPPMGP----- 201
AG P PG GP P G+ P G GP P G R P GP
Sbjct: 1035 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 202 ---------PMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
GI RG PPG PPG G
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPG----PPGSPG 1127
Score = 46.6 bits (109), Expect = 2e-05
Identities = 53/155 (34%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG AG+ AG P PAG AG RG GP+ +P +G A
Sbjct: 599 GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGE-RGEQGPAG---SPGFQGLPGPAGPPGE 654
Query: 159 ASIAGAPTQYPPGRGGPPPPMG----RGAP-------PPGMMGP--------PPGMRPPM 199
A G Q PG G P P G RG P PPG GP G +
Sbjct: 655 AGKPG--EQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA 712
Query: 200 GPPMGIPPGRGTPMGMPPPGMR-----PPPPGMRG 229
G P G P +G P PG R P P G RG
Sbjct: 713 GAP-GAPGSQGAPGLQGMPGERGAAGLPGPKGDRG 746
Score = 44.7 bits (104), Expect = 7e-05
Identities = 47/134 (35%), Positives = 53/134 (39%), Gaps = 25/134 (18%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
GAAG PG +A RG+P G P PAG G G P G A
Sbjct: 587 GAAGEPG--KAGERGVP-GPPGAVGPAGKDGEAGAQGPP----------GPAGPAGERGE 633
Query: 159 ASIAGAP-TQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTP--MGM 215
AG+P Q PG GPP G+ PG G P + P P G RG P G+
Sbjct: 634 QGPAGSPGFQGLPGPAGPPGEAGK----PGEQGVPGDLGAP--GPSGARGERGFPGERGV 687
Query: 216 PPPGMRPPPPGMRG 229
P P P G RG
Sbjct: 688 QGP---PGPAGPRG 698
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 63.9 bits (154), Expect = 1e-10
Identities = 54/136 (39%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Query: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA--------------AAAAAATAS 160
P G P P AP G GP G P M P G VA AA + T
Sbjct: 10 PGGYP-PAAPGG--GPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFG 66
Query: 161 IAGAPTQYP--PGRGGPP-PPMGRGAPP-------PGMMGPPPGMRPPMGPPMGIPPGRG 210
A P YP PG G PP PP G G PP P M PPPG PP P PP G
Sbjct: 67 GANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMP-SYPPYPG 125
Query: 211 TPM---GMPPPGMRPP 223
P+ MPPPG +PP
Sbjct: 126 APVPGQPMPPPGQQPP 141
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/141 (31%), Positives = 52/141 (36%), Gaps = 37/141 (26%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
++G GG + AG P P P G P +QQ + P G
Sbjct: 61 MSGTFGGANMPNLYPGAPGAGYP-PVPPGGFGQPPS-----AQQPVPPYG---------- 104
Query: 157 ATASIAGAPTQYPPGRGGPPP-----PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT 211
YPP G PP P GAP PG PPPG +PP P G PP T
Sbjct: 105 ----------MYPPPGGNPPSRMPSYPPYPGAPVPGQPMPPPGQQPPGAYP-GQPP--VT 151
Query: 212 PMGMPP---PGMRPPPPGMRG 229
G PP PG + P P G
Sbjct: 152 YPGQPPVPLPGQQQPVPSYPG 172
Score = 36.2 bits (82), Expect = 0.024
Identities = 31/106 (29%), Positives = 33/106 (31%), Gaps = 47/106 (44%)
Query: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG--------------------------- 200
YPP GG PP G P G PPP PP+G
Sbjct: 6 YPPPPGGYPPAAPGGGPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTF 65
Query: 201 ------------PPMGIPP----GRGTP----MGMPPPGMRPPPPG 226
P G PP G G P +PP GM PPP G
Sbjct: 66 GGANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGG 111
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 191 PPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
PPPG PP P G G P PPP M PP G+
Sbjct: 8 PPPGGYPPAAPGGGPWGGAAYP---PPPSM--PPIGL 39
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 63.9 bits (154), Expect = 1e-10
Identities = 54/136 (39%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Query: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA--------------AAAAAATAS 160
P G P P AP G GP G P M P G VA AA + T
Sbjct: 10 PGGYP-PAAPGG--GPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFG 66
Query: 161 IAGAPTQYP--PGRGGPP-PPMGRGAPP-------PGMMGPPPGMRPPMGPPMGIPPGRG 210
A P YP PG G PP PP G G PP P M PPPG PP P PP G
Sbjct: 67 GANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMP-SYPPYPG 125
Query: 211 TPM---GMPPPGMRPP 223
P+ MPPPG +PP
Sbjct: 126 APVPGQPMPPPGQQPP 141
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/141 (31%), Positives = 52/141 (36%), Gaps = 37/141 (26%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
++G GG + AG P P P G P +QQ + P G
Sbjct: 61 MSGTFGGANMPNLYPGAPGAGYP-PVPPGGFGQPPS-----AQQPVPPYG---------- 104
Query: 157 ATASIAGAPTQYPPGRGGPPP-----PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT 211
YPP G PP P GAP PG PPPG +PP P G PP T
Sbjct: 105 ----------MYPPPGGNPPSRMPSYPPYPGAPVPGQPMPPPGQQPPGAYP-GQPP--VT 151
Query: 212 PMGMPP---PGMRPPPPGMRG 229
G PP PG + P P G
Sbjct: 152 YPGQPPVPLPGQQQPVPSYPG 172
Score = 36.2 bits (82), Expect = 0.024
Identities = 31/106 (29%), Positives = 33/106 (31%), Gaps = 47/106 (44%)
Query: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG--------------------------- 200
YPP GG PP G P G PPP PP+G
Sbjct: 6 YPPPPGGYPPAAPGGGPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTF 65
Query: 201 ------------PPMGIPP----GRGTP----MGMPPPGMRPPPPG 226
P G PP G G P +PP GM PPP G
Sbjct: 66 GGANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGG 111
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 191 PPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
PPPG PP P G G P PPP M PP G+
Sbjct: 8 PPPGGYPPAAPGGGPWGGAAYP---PPPSM--PPIGL 39
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 63.9 bits (154), Expect = 1e-10
Identities = 54/136 (39%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Query: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA--------------AAAAAATAS 160
P G P P AP G GP G P M P G VA AA + T
Sbjct: 10 PGGYP-PAAPGG--GPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFG 66
Query: 161 IAGAPTQYP--PGRGGPP-PPMGRGAPP-------PGMMGPPPGMRPPMGPPMGIPPGRG 210
A P YP PG G PP PP G G PP P M PPPG PP P PP G
Sbjct: 67 GANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMP-SYPPYPG 125
Query: 211 TPM---GMPPPGMRPP 223
P+ MPPPG +PP
Sbjct: 126 APVPGQPMPPPGQQPP 141
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/141 (31%), Positives = 52/141 (36%), Gaps = 37/141 (26%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
++G GG + AG P P P G P +QQ + P G
Sbjct: 61 MSGTFGGANMPNLYPGAPGAGYP-PVPPGGFGQPPS-----AQQPVPPYG---------- 104
Query: 157 ATASIAGAPTQYPPGRGGPPP-----PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT 211
YPP G PP P GAP PG PPPG +PP P G PP T
Sbjct: 105 ----------MYPPPGGNPPSRMPSYPPYPGAPVPGQPMPPPGQQPPGAYP-GQPP--VT 151
Query: 212 PMGMPP---PGMRPPPPGMRG 229
G PP PG + P P G
Sbjct: 152 YPGQPPVPLPGQQQPVPSYPG 172
Score = 36.2 bits (82), Expect = 0.024
Identities = 31/106 (29%), Positives = 33/106 (31%), Gaps = 47/106 (44%)
Query: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG--------------------------- 200
YPP GG PP G P G PPP PP+G
Sbjct: 6 YPPPPGGYPPAAPGGGPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTF 65
Query: 201 ------------PPMGIPP----GRGTP----MGMPPPGMRPPPPG 226
P G PP G G P +PP GM PPP G
Sbjct: 66 GGANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGG 111
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 191 PPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
PPPG PP P G G P PPP M PP G+
Sbjct: 8 PPPGGYPPAAPGGGPWGGAAYP---PPPSM--PPIGL 39
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 63.2 bits (152), Expect = 2e-10
Identities = 55/156 (35%), Positives = 67/156 (42%), Gaps = 36/156 (23%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-VRGVGGPSQQVM 142
GPPP G P G P G+P G P P AP L P + G+ GP +++
Sbjct: 409 GPPP--LGPPPAPPLRPPGPP-------TGLPPGPP-PGAPPFLRPPGMPGLRGPLPRLL 458
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGR--GGPPPPMGRGAPP-------PGMMGPPP 193
P G P PPG G PP P RG PP PG+ P P
Sbjct: 459 PP--------------GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRP 504
Query: 194 GM-RPPMGPPMG-IPPGRGTPMGMPPPGMRPPPPGM 227
GM RPP+ PP+G PPG P +P PG+ PP +
Sbjct: 505 GMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNL 540
Score = 55.5 bits (132), Expect = 4e-08
Identities = 40/103 (38%), Positives = 48/103 (46%), Gaps = 24/103 (23%)
Query: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPP------PPMGRGAPPPGMM-GPPPG---- 194
G T ++ A S+ + Q PP G PP PP+ PP G+ GPPPG
Sbjct: 382 GTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPF 441
Query: 195 MRPPMGP----------PMGIPPGR--GTPMGMPPPGMRPPPP 225
+RPP P P G PPGR G P G PPPG+ P PP
Sbjct: 442 LRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPG-PPPGLPPGPP 483
Score = 45.1 bits (105), Expect = 5e-05
Identities = 32/81 (39%), Positives = 39/81 (48%), Gaps = 19/81 (23%)
Query: 155 AAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214
+ A++ P PP + PP G PPP +GPPP PP+ PP G P G
Sbjct: 384 STASSQQQAPPQSVPPSQIQAPPMPG---PPP--LGPPPA--PPLRPP-------GPPTG 429
Query: 215 M---PPPGMRP--PPPGMRGL 230
+ PPPG P PPGM GL
Sbjct: 430 LPPGPPPGAPPFLRPPGMPGL 450
Score = 28.5 bits (62), Expect = 5.1
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 120 MPQAPAGLAG---PVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPP 176
MP AP+ + P+ G PS T G A + G P + PPGR P
Sbjct: 144 MPHAPSNILIQDIPLPGAQPPSILKKT-SAYGPPTRAVSILPLLGHGVP-RLPPGRKPPG 201
Query: 177 PPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209
PP G PPP + G + +G + +PP R
Sbjct: 202 PPPG---PPPPQVVQMYGRK--VGFALDLPPRR 229
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 62.8 bits (151), Expect = 2e-10
Identities = 51/157 (32%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 83 EGPPPKDTG---IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG-PVRGVGGPS 138
+GPPP+ AR P G P G +G P PQ P G +G P
Sbjct: 222 QGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 281
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPPMGRGAPPPGMMGPPPG 194
+ PQG + + ++ S G P PP G GPPPP G+ PP G P
Sbjct: 282 K----PQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 337
Query: 195 MRPPMGPPMGIPP--GRGTPMGMPPPGMRPPPPGMRG 229
PP G P G PP G + PPG PP G
Sbjct: 338 GPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEG 374
Score = 58.5 bits (140), Expect = 5e-09
Identities = 54/172 (31%), Positives = 61/172 (35%), Gaps = 29/172 (16%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG-----------LAGPV 131
+GPPP+ + P G P G P G P P P G + P
Sbjct: 58 QGPPPQGGNQPQGP-PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 116
Query: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPT-QYPPGRGGPPPPMGRG------AP 184
+ G P Q PQG P PPG+ PPP G +P
Sbjct: 117 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSP 176
Query: 185 PPGMMGPPP-------GMRPPMGPPMGIPP-GRGTPMGMPPPG--MRPPPPG 226
P GPPP G PP G P G PP G P G PPPG PPP G
Sbjct: 177 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Score = 58.5 bits (140), Expect = 5e-09
Identities = 58/174 (33%), Positives = 69/174 (39%), Gaps = 35/174 (20%)
Query: 83 EGPPPKD--TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG-PVRGVGGPSQ 139
+GPPP+ + R P G P G +G P PQ P G +G P +
Sbjct: 99 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 158
Query: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPPMG-------------RG 182
PQG + ++ S G P PP G GPPPP G +G
Sbjct: 159 ----PQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Query: 183 APPPGM-MGPPP-------GMRPPMGPPMGIPP-GRGTPMGMPPPGMRP--PPP 225
PPPG GPPP R P G P G PP G P G PPP +P PPP
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Score = 57.8 bits (138), Expect = 8e-09
Identities = 45/133 (33%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 109 AAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
++ + + V ++P+ +AG +G P Q PQG + P
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGA--PPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGP 71
Query: 169 PPGRGGP--PPPMG----RGAPPPGM-MGPPP------GMRPPMGPPMGIPP-GRGTPMG 214
PP G P PPP G +G PPPG GPPP R P G P G PP G P G
Sbjct: 72 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQG 131
Query: 215 MPPPGMRP--PPP 225
PPP +P PPP
Sbjct: 132 PPPPPGKPQGPPP 144
Score = 57.0 bits (136), Expect = 1e-08
Identities = 48/170 (28%), Positives = 62/170 (36%), Gaps = 19/170 (11%)
Query: 76 NLVSMTVEGPPPKDTGIARVPLAGAA---GGPGIGRAAGRGIPAGVPMPQAPAGLAGPVR 132
+L++ +G PP+ + P + G P G +G P PQ P G
Sbjct: 30 SLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 89
Query: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192
P + P +G + + + G P Q GPPPP G+ PP G
Sbjct: 90 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 149
Query: 193 PGMRPPMGPPMGIPP-----------GRGTPMGMPPPGMR-----PPPPG 226
P PP G P G PP G P G PP G PPPPG
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPG 199
Score = 46.2 bits (108), Expect = 2e-05
Identities = 43/138 (31%), Positives = 54/138 (39%), Gaps = 10/138 (7%)
Query: 83 EGPPPKD---TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG-PVRGVGGPS 138
+GPPP+ + +R P G P G +G P PQ P G +G P
Sbjct: 284 QGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 343
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
+ P G+ + +A + G P Q GPPPP G G P PP G P
Sbjct: 344 KPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAG-GNPQQ-PQAPPAGQ--P 399
Query: 199 MGPPMGIPPGRGTPMGMP 216
GPP PP G P P
Sbjct: 400 QGPPR--PPQGGRPSRPP 415
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/150 (30%), Positives = 53/150 (35%), Gaps = 17/150 (11%)
Query: 83 EGPPPKDTGIAR-VPLAGAAGGP---GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138
+GPPP+ + P G GP G ++ P G P P G P GP
Sbjct: 264 QGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQ----GPP 319
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM-RP 197
PQG G P Q PP +GG R +PP GPP
Sbjct: 320 PPPGKPQGPPPQGGNKPQGPPP-PGKP-QGPPPQGGSKSRSAR-SPPGKPQGPPQQEGNN 376
Query: 198 PMGPPMGIPPGRGTPM--GMPPPGMRPPPP 225
P GPP PP G P PP G PP
Sbjct: 377 PQGPP---PPAGGNPQQPQAPPAGQPQGPP 403
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 62.0 bits (149), Expect = 4e-10
Identities = 51/153 (33%), Positives = 62/153 (40%), Gaps = 33/153 (21%)
Query: 76 NLVSMTVEGPPP--KDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRG 133
N+ S++ PP KD A P+ G A + A PA +P P
Sbjct: 611 NISSLSQLSPPNDHKDIHAALQPMEGMASNQ---QKALPPPPASIPPPPP---------- 657
Query: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
P G G+++ A S AG P PP PPPP+ PPP GPPP
Sbjct: 658 ---------LPSGLGSLSPAPPMPPVS-AGPPLPPPPP---PPPPL----PPPSSAGPPP 700
Query: 194 GMRPPMGPPMGIPPG-RGTPMGMPPPGMRPPPP 225
PP P PP G P PPPG+ PPPP
Sbjct: 701 PPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPPP 733
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 61.6 bits (148), Expect = 5e-10
Identities = 61/215 (28%), Positives = 79/215 (36%), Gaps = 39/215 (18%)
Query: 41 ILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLAG 99
I DC R P++++ R +K L L+ GE V +V P T +A P
Sbjct: 288 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPA 347
Query: 100 AAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV--GGPSQQVMTPQGRGTVAAAAAAA 157
A + + P + + P G+ GGP P + +
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPH---SFPHPLPSL 404
Query: 158 TASIAGAPTQY------PPGRGGPPPPMGRGAPPPGMMGPPP------------------ 193
T G P Q+ PP PPPPM +G PPG GPPP
Sbjct: 405 TGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLH 464
Query: 194 ---GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
GM PP PPMG+ P P PP G PPPP
Sbjct: 465 QGKGMMPP--PPMGMMP----PPPPPPSGQPPPPP 493
Score = 44.7 bits (104), Expect = 7e-05
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 26/105 (24%)
Query: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPM--GRGAPPPGMMGPPPGMRP--------- 197
+V + + AT +A AP P PPP + + PP M P RP
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGP 387
Query: 198 --PMGPPMGIP-------------PGRGTPMGMPPPGMRPPPPGM 227
P G P P P + P G PPP M+PPPP M
Sbjct: 388 GGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPM 432
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 61.6 bits (148), Expect = 5e-10
Identities = 61/215 (28%), Positives = 79/215 (36%), Gaps = 39/215 (18%)
Query: 41 ILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLAG 99
I DC R P++++ R +K L L+ GE V +V P T +A P
Sbjct: 288 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPA 347
Query: 100 AAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV--GGPSQQVMTPQGRGTVAAAAAAA 157
A + + P + + P G+ GGP P + +
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPH---SFPHPLPSL 404
Query: 158 TASIAGAPTQY------PPGRGGPPPPMGRGAPPPGMMGPPP------------------ 193
T G P Q+ PP PPPPM +G PPG GPPP
Sbjct: 405 TGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLH 464
Query: 194 ---GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
GM PP PPMG+ P P PP G PPPP
Sbjct: 465 QGKGMMPP--PPMGMMP----PPPPPPSGQPPPPP 493
Score = 45.1 bits (105), Expect = 5e-05
Identities = 45/174 (25%), Positives = 61/174 (35%), Gaps = 46/174 (26%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRA-AGRGI----PAGVPMPQAPAGLAGPVRGVGGP- 137
GPPP D + P+ G G+ R G+G+ P G+ P P P GP
Sbjct: 443 GPPPMDQYLGSTPV-----GSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPL 497
Query: 138 --------------------SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPP 177
+ P + T +A T SI Q P
Sbjct: 498 PPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGA 557
Query: 178 PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231
P +G P M+ PPG++P +PPG PP PPPPG G++
Sbjct: 558 PQMQGNPT--MVPLPPGVQP------PLPPG-------APPPPPPPPPGSAGMM 596
Score = 44.7 bits (104), Expect = 7e-05
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 26/105 (24%)
Query: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPM--GRGAPPPGMMGPPPGMRP--------- 197
+V + + AT +A AP P PPP + + PP M P RP
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGP 387
Query: 198 --PMGPPMGIP-------------PGRGTPMGMPPPGMRPPPPGM 227
P G P P P + P G PPP M+PPPP M
Sbjct: 388 GGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPM 432
Score = 30.8 bits (68), Expect = 1.0
Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 24/113 (21%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRG-IPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
PPP + + PL +AG G IP A A G + G P+ +
Sbjct: 511 PPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLP 570
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP-----MGRGAPPPGMMGP 191
P G PPG PPPP G PP G GP
Sbjct: 571 P------------------GVQPPLPPGAPPPPPPPPPGSAGMMIPPRGGDGP 605
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 61.6 bits (148), Expect = 5e-10
Identities = 61/215 (28%), Positives = 79/215 (36%), Gaps = 39/215 (18%)
Query: 41 ILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLAG 99
I DC R P++++ R +K L L+ GE V +V P T +A P
Sbjct: 288 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPA 347
Query: 100 AAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV--GGPSQQVMTPQGRGTVAAAAAAA 157
A + + P + + P G+ GGP P + +
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPH---SFPHPLPSL 404
Query: 158 TASIAGAPTQY------PPGRGGPPPPMGRGAPPPGMMGPPP------------------ 193
T G P Q+ PP PPPPM +G PPG GPPP
Sbjct: 405 TGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLH 464
Query: 194 ---GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
GM PP PPMG+ P P PP G PPPP
Sbjct: 465 QGKGMMPP--PPMGMMP----PPPPPPSGQPPPPP 493
Score = 54.7 bits (130), Expect = 7e-08
Identities = 45/146 (30%), Positives = 52/146 (35%), Gaps = 28/146 (19%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRG-IPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
PPP + + PL +AG G IP A A G + G P+ +
Sbjct: 511 PPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLP 570
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMG----PPPGMRPPM 199
P G PPG PPPP PPPG G PPP PPM
Sbjct: 571 P------------------GVQPPLPPGAPPPPPP-----PPPGSAGMMYAPPPPPPPPM 607
Query: 200 GPPMGIPPGRGTPMGMPPPGMRPPPP 225
P + GMPP GM P PP
Sbjct: 608 DPSNFVTMMGMGVAGMPPFGMPPAPP 633
Score = 53.1 bits (126), Expect = 2e-07
Identities = 60/203 (29%), Positives = 71/203 (34%), Gaps = 70/203 (34%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRA-AGRGI----PAGVPMPQAPAGLAGPVRGVGGP- 137
GPPP D + P+ G G+ R G+G+ P G+ P P P GP
Sbjct: 443 GPPPMDQYLGSTPV-----GSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPL 497
Query: 138 ----SQQVMTPQ---------------------------GRGTV--------AAAAAAAT 158
QQ P G G++ AAAA+
Sbjct: 498 PPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGA 557
Query: 159 ASIAGAPTQYP--PG------RGGPPPPMGRGAPPPG----MMGPPPGMRPPMGPP---- 202
+ G PT P PG G PPPP PPPG M PPP PPM P
Sbjct: 558 PQMQGNPTMVPLPPGVQPPLPPGAPPPP---PPPPPGSAGMMYAPPPPPPPPMDPSNFVT 614
Query: 203 -MGIPPGRGTPMGMPPPGMRPPP 224
MG+ P GMPP PPP
Sbjct: 615 MMGMGVAGMPPFGMPPAPPPPPP 637
Score = 44.7 bits (104), Expect = 7e-05
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 26/105 (24%)
Query: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPM--GRGAPPPGMMGPPPGMRP--------- 197
+V + + AT +A AP P PPP + + PP M P RP
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGP 387
Query: 198 --PMGPPMGIP-------------PGRGTPMGMPPPGMRPPPPGM 227
P G P P P + P G PPP M+PPPP M
Sbjct: 388 GGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPM 432
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 61.2 bits (147), Expect = 7e-10
Identities = 59/163 (36%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 86 PPKDTGIARVPLAGAAGG---PGIGRAA-GRGI--PAGVPMPQAPAGLAGPVRGVGGPSQ 139
P + G+ G GG PG G A G G P G P+ P GLAG G G +
Sbjct: 23 PSRPGGVPGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAF 82
Query: 140 QVMTPQGR---GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
+T G G VA AAAA A+ AGA PG GG G P PG G PG
Sbjct: 83 PAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPG-AGVKPGKV 141
Query: 197 PPMGPPMGIP---------PGRGTPMGMPP-PGMRPPPPGMRG 229
P +G P P PG G G+P G++P PG+ G
Sbjct: 142 PGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/136 (37%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
Query: 91 GIARVPL--AGAAGGPGIGRAAGRGIP--AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
G+ +P GA G PG G G GIP AGVP G+ G V GVGG ++P+
Sbjct: 390 GVGGIPTYGVGAGGFPGFGVGVG-GIPGVAGVP------GVGG-VPGVGGVPGVGISPE- 440
Query: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG--PPMG 204
A AAAAA A+ G PG G P G G P + P G+ P +G P +G
Sbjct: 441 ----AQAAAAAKAAKYGLV----PGVGVAP---GVGVAPGVGVAPGVGLAPGVGVAPGVG 489
Query: 205 IPPGRGTPMGMPPPGM 220
+ PG G G+ P G+
Sbjct: 490 VAPGVGVAPGIGPGGV 505
Score = 50.4 bits (119), Expect = 1e-06
Identities = 51/130 (39%), Positives = 63/130 (48%), Gaps = 31/130 (23%)
Query: 98 AGAAGG-PGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
AGAAG PG+G G G+P G+ G + G+GG + G GT AAAAAA
Sbjct: 268 AGAAGVLPGVG---GAGVP----------GVPGAIPGIGGIA-------GVGTPAAAAAA 307
Query: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG-PPMGIP--PGRGTPM 213
A A+ A +Y G P G G PG++G P P +G P GIP PG G P
Sbjct: 308 AAAAKA---AKYGAAAGLVPGGPGFG---PGVVGVPGAGVPGVGVPGAGIPVVPGAGIP- 360
Query: 214 GMPPPGMRPP 223
G PG+ P
Sbjct: 361 GAAVPGVVSP 370
Score = 46.2 bits (108), Expect = 2e-05
Identities = 45/135 (33%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 98 AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLA-GPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
AG G PG+G G G+ AG +PQ AG+ G V GVG P G + A
Sbjct: 110 AGLGGVPGVG---GLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYP-----GGVLPGARFP 161
Query: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG-------IPPGR 209
+ G PT G G P G G G+ G P P G P+G +P G
Sbjct: 162 GVGVLPGVPT----GAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGGY 217
Query: 210 GTP--MGMPPPGMRP 222
G P G P G P
Sbjct: 218 GLPYTTGKLPYGYGP 232
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/117 (35%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 91 GIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG-GPSQQVMTPQGRGT 149
G+ P G A PG+G A G G+ GV G GVG P V G G
Sbjct: 457 GVGVAPGVGVA--PGVGVAPGVGLAPGV----------GVAPGVGVAPGVGVAPGIGPGG 504
Query: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206
VAAAA +A A A + G G P +G G PG +G G+ P +G G+P
Sbjct: 505 VAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPG-LGVGAGV-PGLGVGAGVP 559
Score = 42.7 bits (99), Expect = 3e-04
Identities = 45/133 (33%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 81 TVEGPPPKDTGI----ARVPLAGAAGGPGIGRAAGRGI-----PAGVPMPQA-------- 123
T G PK G+ A +P G GGP G G I P G +P
Sbjct: 171 TGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGGYGLPYTTGKLPYGY 230
Query: 124 -PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182
P G+AG G P T G G AAAAAAA A+ ++ G G P +G G
Sbjct: 231 GPGGVAGAAGKAGYP-----TGTGVGPQAAAAAAAKAA-----AKFGAGAAGVLPGVG-G 279
Query: 183 APPPGMMGPPPGM 195
A PG+ G PG+
Sbjct: 280 AGVPGVPGAIPGI 292
Score = 37.0 bits (84), Expect = 0.014
Identities = 42/117 (35%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 102 GGPGIGRAAGRGIP-AGVPMPQAPAGLAGPVRGVGGPSQQ---VMTPQGRGTVAAAAAAA 157
GGPG G G+P AGVP P V G G P V++P+ AA AA
Sbjct: 325 GGPGFGPGV-VGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKY 383
Query: 158 TA----SIAGAPTQYPPGRGG-PPPPMGRGAPPPGMMGPPPGMRPPMG--PPMGIPP 207
A + G PT Y G GG P +G G P P G P +G P +GI P
Sbjct: 384 GARPGVGVGGIPT-YGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISP 439
Score = 35.4 bits (80), Expect = 0.042
Identities = 37/102 (36%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 93 ARVPLAGAAG-GPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
A+ L AAG G GI G G+ GVP AG+ G G G P G G V
Sbjct: 517 AKAQLRAAAGLGAGI---PGLGVGVGVPGLGVGAGVPGLGVGAGVP--------GFGAVP 565
Query: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
A AAA A+ GA PG G +G P G++G P
Sbjct: 566 GALAAAKAAKYGAAV---PGVLGGLGALGGVGIPGGVVGAGP 604
Score = 32.3 bits (72), Expect = 0.35
Identities = 41/126 (32%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPA---------------GLA 128
G P G+ L AG PG+G G G+P +P A A G
Sbjct: 530 GIPGLGVGVGVPGLGVGAGVPGLG--VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGL 587
Query: 129 GPVRGVGGPSQQVMTPQGRGTVAAAAAAATAS------IAGAPTQYPPGRG--GPPPPMG 180
G + GVG P V G G AAAAAA A+ + GA G G G P G
Sbjct: 588 GALGGVGIPGGVV----GAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGG 643
Query: 181 RGAPPP 186
G PP
Sbjct: 644 LGGIPP 649
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.141 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,763,959
Number of Sequences: 37866
Number of extensions: 1427885
Number of successful extensions: 34605
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 1700
Number of HSP's that attempted gapping in prelim test: 9453
Number of HSP's gapped (non-prelim): 11323
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.