BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens] (114 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens] 228 8e-61 gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens] 163 2e-41 gi|239756106 PREDICTED: hypothetical protein [Homo sapiens] 115 7e-27 gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo ... 115 7e-27 gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo ... 115 7e-27 gi|4506671 ribosomal protein P2 [Homo sapiens] 63 4e-11 gi|4506667 ribosomal protein P0 [Homo sapiens] 51 2e-07 gi|16933546 ribosomal protein P0 [Homo sapiens] 51 2e-07 gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 39 7e-04 gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 39 7e-04 gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 39 7e-04 gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f... 38 0.002 gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 37 0.004 gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 37 0.004 gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 36 0.006 gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 36 0.006 gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 36 0.006 gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] 35 0.010 gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 35 0.017 gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 34 0.029 gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 34 0.029 gi|157909822 pragmin [Homo sapiens] 33 0.064 gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 32 0.11 gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapi... 32 0.14 gi|50845428 atrial/embryonic alkali myosin light chain [Homo sap... 32 0.14 gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 32 0.14 gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ... 31 0.18 gi|130502140 NEZHA isoform 2 [Homo sapiens] 31 0.18 gi|122937255 NEZHA isoform 1 [Homo sapiens] 31 0.18 gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 31 0.18 >gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens] Length = 114 Score = 228 bits (581), Expect = 8e-61 Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 >gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens] Length = 89 Score = 163 bits (413), Expect = 2e-41 Identities = 89/114 (78%), Positives = 89/114 (78%), Gaps = 25/114 (21%) Query: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 MASVSELACIYSALILHDDEVTVT ALANVNIGSLI Sbjct: 1 MASVSELACIYSALILHDDEVTVT-------------------------ALANVNIGSLI 35 Query: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD Sbjct: 36 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 89 >gi|239756106 PREDICTED: hypothetical protein [Homo sapiens] Length = 153 Score = 115 bits (288), Expect = 7e-27 Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%) Query: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68 CI LILHD+EVT+T +ANVNI S ICNVGAGGP Sbjct: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107 Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153 >gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo sapiens] Length = 153 Score = 115 bits (288), Expect = 7e-27 Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%) Query: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68 CI LILHD+EVT+T +ANVNI S ICNVGAGGP Sbjct: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107 Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153 >gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo sapiens] Length = 153 Score = 115 bits (288), Expect = 7e-27 Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%) Query: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68 CI LILHD+EVT+T +ANVNI S ICNVGAGGP Sbjct: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107 Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153 >gi|4506671 ribosomal protein P2 [Homo sapiens] Length = 115 Score = 63.2 bits (152), Expect = 4e-11 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 12/101 (11%) Query: 15 ILHDDEVTVTEDKINALIKAA-GVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAG 73 IL + +D++N +I G N+E + IG L +V AGG + Sbjct: 26 ILDSVGIEADDDRLNKVISELNGKNIED---------VIAQGIGKL-ASVPAGGAVAVSA 75 Query: 74 AAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 A + PA +A A AEEKK E KKEESEESDDDMGFGLFD Sbjct: 76 APGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115 >gi|4506667 ribosomal protein P0 [Homo sapiens] Length = 317 Score = 51.2 bits (121), Expect = 2e-07 Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 4/44 (9%) Query: 71 AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 AA A A AP+ AAAPA KVEAK EESEESD+DMGFGLFD Sbjct: 278 AAPVAAATTAAPAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317 >gi|16933546 ribosomal protein P0 [Homo sapiens] Length = 317 Score = 51.2 bits (121), Expect = 2e-07 Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 4/44 (9%) Query: 71 AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 AA A A AP+ AAAPA KVEAK EESEESD+DMGFGLFD Sbjct: 278 AAPVAAATTAAPAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317 >gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo sapiens] Length = 305 Score = 39.3 bits (90), Expect = 7e-04 Identities = 21/45 (46%), Positives = 25/45 (55%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109 A PAPA AAPA PAP+ A APA +A +ES E + G Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220 Score = 33.5 bits (75), Expect = 0.037 Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 63 VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98 V A PAPA APA PAP+ AAP E + A + Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 219 Score = 30.4 bits (67), Expect = 0.32 Identities = 14/22 (63%), Positives = 14/22 (63%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89 PAPA APA PAP A APA Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190 Score = 30.0 bits (66), Expect = 0.41 Identities = 16/48 (33%), Positives = 21/48 (43%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112 A PAPA APA PAP A + E+ + E D + G+ Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235 Score = 29.6 bits (65), Expect = 0.54 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108 PAPA APA PAP+ A A ++ E + + + + Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 227 Score = 28.9 bits (63), Expect = 0.92 Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 69 APAAGAAPAGGPAPSTAAAPA 89 APA APA PAP+ AAPA Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188 Score = 26.6 bits (57), Expect = 4.6 Identities = 19/59 (32%), Positives = 24/59 (40%) Query: 30 ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88 A+ A +EP L A + S+ A P P APA PAP+ AAP Sbjct: 99 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157 Score = 25.8 bits (55), Expect = 7.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89 P A APA PAP+ A APA Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPA 182 >gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo sapiens] Length = 305 Score = 39.3 bits (90), Expect = 7e-04 Identities = 21/45 (46%), Positives = 25/45 (55%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109 A PAPA AAPA PAP+ A APA +A +ES E + G Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220 Score = 33.5 bits (75), Expect = 0.037 Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 63 VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98 V A PAPA APA PAP+ AAP E + A + Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 219 Score = 30.4 bits (67), Expect = 0.32 Identities = 14/22 (63%), Positives = 14/22 (63%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89 PAPA APA PAP A APA Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190 Score = 30.0 bits (66), Expect = 0.41 Identities = 16/48 (33%), Positives = 21/48 (43%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112 A PAPA APA PAP A + E+ + E D + G+ Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235 Score = 29.6 bits (65), Expect = 0.54 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108 PAPA APA PAP+ A A ++ E + + + + Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 227 Score = 28.9 bits (63), Expect = 0.92 Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 69 APAAGAAPAGGPAPSTAAAPA 89 APA APA PAP+ AAPA Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188 Score = 26.6 bits (57), Expect = 4.6 Identities = 19/59 (32%), Positives = 24/59 (40%) Query: 30 ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88 A+ A +EP L A + S+ A P P APA PAP+ AAP Sbjct: 99 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157 Score = 25.8 bits (55), Expect = 7.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89 P A APA PAP+ A APA Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPA 182 >gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo sapiens] Length = 316 Score = 39.3 bits (90), Expect = 7e-04 Identities = 21/45 (46%), Positives = 25/45 (55%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109 A PAPA AAPA PAP+ A APA +A +ES E + G Sbjct: 187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 231 Score = 33.5 bits (75), Expect = 0.037 Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 63 VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98 V A PAPA APA PAP+ AAP E + A + Sbjct: 195 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 230 Score = 30.4 bits (67), Expect = 0.32 Identities = 14/22 (63%), Positives = 14/22 (63%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89 PAPA APA PAP A APA Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPA 201 Score = 30.0 bits (66), Expect = 0.41 Identities = 16/48 (33%), Positives = 21/48 (43%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112 A PAPA APA PAP A + E+ + E D + G+ Sbjct: 199 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 246 Score = 29.6 bits (65), Expect = 0.54 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108 PAPA APA PAP+ A A ++ E + + + + Sbjct: 198 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 238 Score = 28.9 bits (63), Expect = 0.92 Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 69 APAAGAAPAGGPAPSTAAAPA 89 APA APA PAP+ AAPA Sbjct: 179 APAPAPAPAPAPAPAPVAAPA 199 Score = 26.6 bits (57), Expect = 4.6 Identities = 19/59 (32%), Positives = 24/59 (40%) Query: 30 ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88 A+ A +EP L A + S+ A P P APA PAP+ AAP Sbjct: 110 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 168 Score = 25.8 bits (55), Expect = 7.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89 P A APA PAP+ A APA Sbjct: 172 PVAVAVLAPAPAPAPAPAPAPA 193 >gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f [Homo sapiens] Length = 194 Score = 37.7 bits (86), Expect = 0.002 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 11/56 (19%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEK---------KVEAKKEESEESDDDMGFGLFD 114 P AA AAPA PAP+ A APA+ K K+E KE+ +E + F LFD Sbjct: 10 PVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKE--AFLLFD 63 >gi|166795264 AE binding protein 2 isoform b [Homo sapiens] Length = 517 Score = 36.6 bits (83), Expect = 0.004 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 56 IGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107 + +L+ N G+GG G GG A T + P+ E +A ++E EE DD+ Sbjct: 54 VAALLLNGGSGGGGGGGGGGVGGGEA-ETMSEPSPESASQAGEDEDEEEDDE 104 >gi|166795262 AE binding protein 2 isoform a [Homo sapiens] Length = 503 Score = 36.6 bits (83), Expect = 0.004 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 56 IGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107 + +L+ N G+GG G GG A T + P+ E +A ++E EE DD+ Sbjct: 54 VAALLLNGGSGGGGGGGGGGVGGGEA-ETMSEPSPESASQAGEDEDEEEDDE 104 >gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] Length = 170 Score = 36.2 bits (82), Expect = 0.006 Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 70 PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109 PA P G P+ A A AEE+ VEA++EE ++ D + G Sbjct: 86 PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125 Score = 25.8 bits (55), Expect = 7.8 Identities = 13/35 (37%), Positives = 14/35 (40%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102 P PA A G PAPS AP +E E Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76 >gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] Length = 177 Score = 36.2 bits (82), Expect = 0.006 Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 70 PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109 PA P G P+ A A AEE+ VEA++EE ++ D + G Sbjct: 86 PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125 Score = 25.8 bits (55), Expect = 7.8 Identities = 13/35 (37%), Positives = 14/35 (40%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102 P PA A G PAPS AP +E E Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76 >gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] Length = 204 Score = 36.2 bits (82), Expect = 0.006 Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 70 PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109 PA P G P+ A A AEE+ VEA++EE ++ D + G Sbjct: 86 PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125 Score = 25.8 bits (55), Expect = 7.8 Identities = 13/35 (37%), Positives = 14/35 (40%) Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102 P PA A G PAPS AP +E E Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76 >gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] Length = 574 Score = 35.4 bits (80), Expect = 0.010 Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107 AP + AP P PS A APAE + V+ K E SD++ Sbjct: 327 APTSAPAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEE 365 Score = 28.1 bits (61), Expect = 1.6 Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESD 105 APA +AP AP+ A A + KVEA EE+D Sbjct: 331 APAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEETD 367 >gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] Length = 1759 Score = 34.7 bits (78), Expect = 0.017 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 52 ANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAA-----PAEEKKVEAKKEESEESDD 106 A +G + + G GP AA P G A + AAA EE+++E +EE+E+ +D Sbjct: 1635 AAAGLGLALGDAGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDED 1694 Query: 107 D 107 + Sbjct: 1695 E 1695 >gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] Length = 407 Score = 33.9 bits (76), Expect = 0.029 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 45 GLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAA----APAEEKKVEAKKEE 100 G+F+ ALA+ +G L+C G PA A AA G A A E+K+ + K ++ Sbjct: 341 GMFSAALASGQLGPLMCQFGL--PAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKK 398 Query: 101 SEESD 105 EE D Sbjct: 399 DEEED 403 >gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] Length = 407 Score = 33.9 bits (76), Expect = 0.029 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 45 GLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAA----APAEEKKVEAKKEE 100 G+F+ ALA+ +G L+C G PA A AA G A A E+K+ + K ++ Sbjct: 341 GMFSAALASGQLGPLMCQFGL--PAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKK 398 Query: 101 SEESD 105 EE D Sbjct: 399 DEEED 403 >gi|157909822 pragmin [Homo sapiens] Length = 1402 Score = 32.7 bits (73), Expect = 0.064 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 45 GLFAKALANVNIGSLICNVGAG-GPAPAAGAAPAGGPAPSTAAAP 88 G+ + L N+ + C + AG GPAPA APA P ++AAP Sbjct: 1138 GIIHRDLCLENLLLVHCTLQAGPGPAPAPAPAPAAAAPPCSSAAP 1182 >gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo sapiens] Length = 1336 Score = 32.0 bits (71), Expect = 0.11 Identities = 18/49 (36%), Positives = 22/49 (44%) Query: 64 GAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112 GAGG A G APA P A P +E +SE+S+ G L Sbjct: 1078 GAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPSPSDSEDSESLGGASL 1126 >gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapiens] Length = 197 Score = 31.6 bits (70), Expect = 0.14 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA---EEKKVEAKKEESEESDDDMGFGLFD 114 PAPA APA PAP PA + K++ ++ EE + F LFD Sbjct: 17 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64 >gi|50845428 atrial/embryonic alkali myosin light chain [Homo sapiens] Length = 197 Score = 31.6 bits (70), Expect = 0.14 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 68 PAPAAGAAPAGGPAPSTAAAPA---EEKKVEAKKEESEESDDDMGFGLFD 114 PAPA APA PAP PA + K++ ++ EE + F LFD Sbjct: 17 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64 >gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] Length = 315 Score = 31.6 bits (70), Expect = 0.14 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 65 AGGPA-PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEE-----SDDDMGF 110 A GP+ A AA A P PS P EE++ A EE EE ++ +GF Sbjct: 203 AQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGF 254 >gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo sapiens] Length = 114 Score = 31.2 bits (69), Expect = 0.18 Identities = 18/55 (32%), Positives = 23/55 (41%) Query: 52 ANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDD 106 + + G +C A A AGAAPA +P T P EE S E+ D Sbjct: 36 SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGENGD 90 >gi|130502140 NEZHA isoform 2 [Homo sapiens] Length = 1249 Score = 31.2 bits (69), Expect = 0.18 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEK 92 A GPAP A P PAP+ A APAEE+ Sbjct: 943 APGPAPLVSAVPMATPAPA-ARAPAEEE 969 >gi|122937255 NEZHA isoform 1 [Homo sapiens] Length = 1276 Score = 31.2 bits (69), Expect = 0.18 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEK 92 A GPAP A P PAP+ A APAEE+ Sbjct: 970 APGPAPLVSAVPMATPAPA-ARAPAEEE 996 >gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] Length = 887 Score = 31.2 bits (69), Expect = 0.18 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Query: 44 PGLFAKALANVNIGSLICNVGAGGPAPAAGAAP--AGGPAPSTAAAPAEEKK 93 P L A A + + A PAPA AAP A PA + +AAP+ +K Sbjct: 520 PALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQK 571 Score = 27.7 bits (60), Expect = 2.0 Identities = 16/42 (38%), Positives = 19/42 (45%) Query: 48 AKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPA 89 A A+A + A APA A A PA + AAAPA Sbjct: 496 AAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPA 537 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.130 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,797,749 Number of Sequences: 37866 Number of extensions: 260634 Number of successful extensions: 5408 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 312 Number of HSP's successfully gapped in prelim test: 154 Number of HSP's that attempted gapping in prelim test: 3859 Number of HSP's gapped (non-prelim): 1454 length of query: 114 length of database: 18,247,518 effective HSP length: 84 effective length of query: 30 effective length of database: 15,066,774 effective search space: 452003220 effective search space used: 452003220 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.