Guide to the Human Genome
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Search of human proteins with 4506669

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
         (114 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]              228   8e-61
gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]             163   2e-41
gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]           115   7e-27
gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo ...   115   7e-27
gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo ...   115   7e-27
gi|4506671 ribosomal protein P2 [Homo sapiens]                         63   4e-11
gi|4506667 ribosomal protein P0 [Homo sapiens]                         51   2e-07
gi|16933546 ribosomal protein P0 [Homo sapiens]                        51   2e-07
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    39   7e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    39   7e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    39   7e-04
gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f...    38   0.002
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             37   0.004
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             37   0.004
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]    36   0.006
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]    36   0.006
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]    36   0.006
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]     35   0.010
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]    35   0.017
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]    34   0.029
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]    34   0.029
gi|157909822 pragmin [Homo sapiens]                                    33   0.064
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    32   0.11 
gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapi...    32   0.14 
gi|50845428 atrial/embryonic alkali myosin light chain [Homo sap...    32   0.14 
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]       32   0.14 
gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ...    31   0.18 
gi|130502140 NEZHA isoform 2 [Homo sapiens]                            31   0.18 
gi|122937255 NEZHA isoform 1 [Homo sapiens]                            31   0.18 
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          31   0.18 

>gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
          Length = 114

 Score =  228 bits (581), Expect = 8e-61
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
           MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]
          Length = 89

 Score =  163 bits (413), Expect = 2e-41
 Identities = 89/114 (78%), Positives = 89/114 (78%), Gaps = 25/114 (21%)

Query: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
           MASVSELACIYSALILHDDEVTVT                         ALANVNIGSLI
Sbjct: 1   MASVSELACIYSALILHDDEVTVT-------------------------ALANVNIGSLI 35

Query: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
Sbjct: 36  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 89


>gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  115 bits (288), Expect = 7e-27
 Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)

Query: 9   CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
           CI   LILHD+EVT+T                          +ANVNI S ICNVGAGGP
Sbjct: 73  CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107

Query: 69  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           AP  GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo
           sapiens]
          Length = 153

 Score =  115 bits (288), Expect = 7e-27
 Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)

Query: 9   CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
           CI   LILHD+EVT+T                          +ANVNI S ICNVGAGGP
Sbjct: 73  CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107

Query: 69  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           AP  GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo
           sapiens]
          Length = 153

 Score =  115 bits (288), Expect = 7e-27
 Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)

Query: 9   CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
           CI   LILHD+EVT+T                          +ANVNI S ICNVGAGGP
Sbjct: 73  CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107

Query: 69  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           AP  GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|4506671 ribosomal protein P2 [Homo sapiens]
          Length = 115

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 12/101 (11%)

Query: 15  ILHDDEVTVTEDKINALIKAA-GVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAG 73
           IL    +   +D++N +I    G N+E          +    IG L  +V AGG    + 
Sbjct: 26  ILDSVGIEADDDRLNKVISELNGKNIED---------VIAQGIGKL-ASVPAGGAVAVSA 75

Query: 74  AAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           A  +  PA  +A A AEEKK E KKEESEESDDDMGFGLFD
Sbjct: 76  APGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115


>gi|4506667 ribosomal protein P0 [Homo sapiens]
          Length = 317

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 4/44 (9%)

Query: 71  AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           AA  A A   AP+ AAAPA   KVEAK EESEESD+DMGFGLFD
Sbjct: 278 AAPVAAATTAAPAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317


>gi|16933546 ribosomal protein P0 [Homo sapiens]
          Length = 317

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 4/44 (9%)

Query: 71  AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
           AA  A A   AP+ AAAPA   KVEAK EESEESD+DMGFGLFD
Sbjct: 278 AAPVAAATTAAPAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
           A  PAPA  AAPA  PAP+ A APA     +A  +ES E   + G
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 63  VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98
           V A  PAPA   APA  PAP+  AAP E  +  A +
Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 219



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA 89
           PAPA   APA  PAP  A APA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
           A  PAPA   APA  PAP  A   + E+     +   E   D +  G+
Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108
           PAPA   APA  PAP+ A   A ++  E    + +   + +
Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 227



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 69  APAAGAAPAGGPAPSTAAAPA 89
           APA   APA  PAP+  AAPA
Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/59 (32%), Positives = 24/59 (40%)

Query: 30  ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88
           A+  A    +EP    L     A   + S+     A  P P    APA  PAP+  AAP
Sbjct: 99  AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA 89
           P   A  APA  PAP+ A APA
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPA 182


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
           A  PAPA  AAPA  PAP+ A APA     +A  +ES E   + G
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 63  VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98
           V A  PAPA   APA  PAP+  AAP E  +  A +
Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 219



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA 89
           PAPA   APA  PAP  A APA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
           A  PAPA   APA  PAP  A   + E+     +   E   D +  G+
Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108
           PAPA   APA  PAP+ A   A ++  E    + +   + +
Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 227



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 69  APAAGAAPAGGPAPSTAAAPA 89
           APA   APA  PAP+  AAPA
Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/59 (32%), Positives = 24/59 (40%)

Query: 30  ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88
           A+  A    +EP    L     A   + S+     A  P P    APA  PAP+  AAP
Sbjct: 99  AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA 89
           P   A  APA  PAP+ A APA
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPA 182


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
           A  PAPA  AAPA  PAP+ A APA     +A  +ES E   + G
Sbjct: 187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 231



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 63  VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98
           V A  PAPA   APA  PAP+  AAP E  +  A +
Sbjct: 195 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 230



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA 89
           PAPA   APA  PAP  A APA
Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPA 201



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
           A  PAPA   APA  PAP  A   + E+     +   E   D +  G+
Sbjct: 199 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 246



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108
           PAPA   APA  PAP+ A   A ++  E    + +   + +
Sbjct: 198 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 238



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 69  APAAGAAPAGGPAPSTAAAPA 89
           APA   APA  PAP+  AAPA
Sbjct: 179 APAPAPAPAPAPAPAPVAAPA 199



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/59 (32%), Positives = 24/59 (40%)

Query: 30  ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88
           A+  A    +EP    L     A   + S+     A  P P    APA  PAP+  AAP
Sbjct: 110 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 168



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA 89
           P   A  APA  PAP+ A APA
Sbjct: 172 PVAVAVLAPAPAPAPAPAPAPA 193


>gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f
           [Homo sapiens]
          Length = 194

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 11/56 (19%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEK---------KVEAKKEESEESDDDMGFGLFD 114
           P  AA AAPA  PAP+ A APA+ K         K+E  KE+ +E  +   F LFD
Sbjct: 10  PVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKE--AFLLFD 63


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 56  IGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107
           + +L+ N G+GG     G    GG A  T + P+ E   +A ++E EE DD+
Sbjct: 54  VAALLLNGGSGGGGGGGGGGVGGGEA-ETMSEPSPESASQAGEDEDEEEDDE 104


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 56  IGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107
           + +L+ N G+GG     G    GG A  T + P+ E   +A ++E EE DD+
Sbjct: 54  VAALLLNGGSGGGGGGGGGGVGGGEA-ETMSEPSPESASQAGEDEDEEEDDE 104


>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
          Length = 170

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 70  PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
           PA    P G   P+ A A AEE+ VEA++EE ++ D + G
Sbjct: 86  PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102
           P PA  A   G PAPS   AP         +E  E
Sbjct: 42  PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76


>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
          Length = 177

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 70  PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
           PA    P G   P+ A A AEE+ VEA++EE ++ D + G
Sbjct: 86  PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102
           P PA  A   G PAPS   AP         +E  E
Sbjct: 42  PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76


>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
          Length = 204

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 70  PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
           PA    P G   P+ A A AEE+ VEA++EE ++ D + G
Sbjct: 86  PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102
           P PA  A   G PAPS   AP         +E  E
Sbjct: 42  PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76


>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
          Length = 574

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 69  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107
           AP +  AP   P PS A APAE + V+ K E    SD++
Sbjct: 327 APTSAPAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEE 365



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 69  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESD 105
           APA  +AP    AP+ A A   + KVEA     EE+D
Sbjct: 331 APAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEETD 367


>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
          Length = 1759

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 52   ANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAA-----PAEEKKVEAKKEESEESDD 106
            A   +G  + + G  GP  AA   P  G A + AAA       EE+++E  +EE+E+ +D
Sbjct: 1635 AAAGLGLALGDAGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDED 1694

Query: 107  D 107
            +
Sbjct: 1695 E 1695


>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
          Length = 407

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 45  GLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAA----APAEEKKVEAKKEE 100
           G+F+ ALA+  +G L+C  G   PA A  AA  G       A    A  E+K+ + K ++
Sbjct: 341 GMFSAALASGQLGPLMCQFGL--PAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKK 398

Query: 101 SEESD 105
            EE D
Sbjct: 399 DEEED 403


>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
          Length = 407

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 45  GLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAA----APAEEKKVEAKKEE 100
           G+F+ ALA+  +G L+C  G   PA A  AA  G       A    A  E+K+ + K ++
Sbjct: 341 GMFSAALASGQLGPLMCQFGL--PAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKK 398

Query: 101 SEESD 105
            EE D
Sbjct: 399 DEEED 403


>gi|157909822 pragmin [Homo sapiens]
          Length = 1402

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 45   GLFAKALANVNIGSLICNVGAG-GPAPAAGAAPAGGPAPSTAAAP 88
            G+  + L   N+  + C + AG GPAPA   APA    P ++AAP
Sbjct: 1138 GIIHRDLCLENLLLVHCTLQAGPGPAPAPAPAPAAAAPPCSSAAP 1182


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 18/49 (36%), Positives = 22/49 (44%)

Query: 64   GAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
            GAGG   A G APA  P    A  P     +E    +SE+S+   G  L
Sbjct: 1078 GAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPSPSDSEDSESLGGASL 1126


>gi|4557038 atrial/embryonic alkali myosin light chain [Homo
           sapiens]
          Length = 197

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA---EEKKVEAKKEESEESDDDMGFGLFD 114
           PAPA   APA  PAP     PA   +  K++   ++ EE  +   F LFD
Sbjct: 17  PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64


>gi|50845428 atrial/embryonic alkali myosin light chain [Homo
           sapiens]
          Length = 197

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 68  PAPAAGAAPAGGPAPSTAAAPA---EEKKVEAKKEESEESDDDMGFGLFD 114
           PAPA   APA  PAP     PA   +  K++   ++ EE  +   F LFD
Sbjct: 17  PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64


>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
          Length = 315

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 65  AGGPA-PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEE-----SDDDMGF 110
           A GP+   A AA A  P PS    P EE++  A  EE EE      ++ +GF
Sbjct: 203 AQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGF 254


>gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
           sapiens]
          Length = 114

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 52  ANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDD 106
           +  + G  +C   A   A  AGAAPA   +P T   P EE         S E+ D
Sbjct: 36  SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGENGD 90


>gi|130502140 NEZHA isoform 2 [Homo sapiens]
          Length = 1249

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEK 92
           A GPAP   A P   PAP+ A APAEE+
Sbjct: 943 APGPAPLVSAVPMATPAPA-ARAPAEEE 969


>gi|122937255 NEZHA isoform 1 [Homo sapiens]
          Length = 1276

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 65  AGGPAPAAGAAPAGGPAPSTAAAPAEEK 92
           A GPAP   A P   PAP+ A APAEE+
Sbjct: 970 APGPAPLVSAVPMATPAPA-ARAPAEEE 996


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 44  PGLFAKALANVNIGSLICNVGAGGPAPAAGAAP--AGGPAPSTAAAPAEEKK 93
           P L A A   +   +      A  PAPA  AAP  A  PA + +AAP+  +K
Sbjct: 520 PALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQK 571



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 48  AKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPA 89
           A A+A     +      A   APA   A A  PA + AAAPA
Sbjct: 496 AAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPA 537


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,797,749
Number of Sequences: 37866
Number of extensions: 260634
Number of successful extensions: 5408
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 3859
Number of HSP's gapped (non-prelim): 1454
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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