Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506669
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens] 228 8e-61
gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens] 163 2e-41
gi|239756106 PREDICTED: hypothetical protein [Homo sapiens] 115 7e-27
gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo ... 115 7e-27
gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo ... 115 7e-27
gi|4506671 ribosomal protein P2 [Homo sapiens] 63 4e-11
gi|4506667 ribosomal protein P0 [Homo sapiens] 51 2e-07
gi|16933546 ribosomal protein P0 [Homo sapiens] 51 2e-07
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 39 7e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 39 7e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 39 7e-04
gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f... 38 0.002
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 37 0.004
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 37 0.004
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 36 0.006
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 36 0.006
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 36 0.006
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] 35 0.010
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 35 0.017
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 34 0.029
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 34 0.029
gi|157909822 pragmin [Homo sapiens] 33 0.064
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 32 0.11
gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapi... 32 0.14
gi|50845428 atrial/embryonic alkali myosin light chain [Homo sap... 32 0.14
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 32 0.14
gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ... 31 0.18
gi|130502140 NEZHA isoform 2 [Homo sapiens] 31 0.18
gi|122937255 NEZHA isoform 1 [Homo sapiens] 31 0.18
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 31 0.18
>gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
Length = 114
Score = 228 bits (581), Expect = 8e-61
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]
Length = 89
Score = 163 bits (413), Expect = 2e-41
Identities = 89/114 (78%), Positives = 89/114 (78%), Gaps = 25/114 (21%)
Query: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
MASVSELACIYSALILHDDEVTVT ALANVNIGSLI
Sbjct: 1 MASVSELACIYSALILHDDEVTVT-------------------------ALANVNIGSLI 35
Query: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
Sbjct: 36 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 89
>gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 115 bits (288), Expect = 7e-27
Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)
Query: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
CI LILHD+EVT+T +ANVNI S ICNVGAGGP
Sbjct: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107
Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
>gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo
sapiens]
Length = 153
Score = 115 bits (288), Expect = 7e-27
Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)
Query: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
CI LILHD+EVT+T +ANVNI S ICNVGAGGP
Sbjct: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107
Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
>gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo
sapiens]
Length = 153
Score = 115 bits (288), Expect = 7e-27
Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)
Query: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
CI LILHD+EVT+T +ANVNI S ICNVGAGGP
Sbjct: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107
Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
>gi|4506671 ribosomal protein P2 [Homo sapiens]
Length = 115
Score = 63.2 bits (152), Expect = 4e-11
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 15 ILHDDEVTVTEDKINALIKAA-GVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAG 73
IL + +D++N +I G N+E + IG L +V AGG +
Sbjct: 26 ILDSVGIEADDDRLNKVISELNGKNIED---------VIAQGIGKL-ASVPAGGAVAVSA 75
Query: 74 AAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
A + PA +A A AEEKK E KKEESEESDDDMGFGLFD
Sbjct: 76 APGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
>gi|4506667 ribosomal protein P0 [Homo sapiens]
Length = 317
Score = 51.2 bits (121), Expect = 2e-07
Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 71 AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
AA A A AP+ AAAPA KVEAK EESEESD+DMGFGLFD
Sbjct: 278 AAPVAAATTAAPAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317
>gi|16933546 ribosomal protein P0 [Homo sapiens]
Length = 317
Score = 51.2 bits (121), Expect = 2e-07
Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 71 AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
AA A A AP+ AAAPA KVEAK EESEESD+DMGFGLFD
Sbjct: 278 AAPVAAATTAAPAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
A PAPA AAPA PAP+ A APA +A +ES E + G
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 63 VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98
V A PAPA APA PAP+ AAP E + A +
Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 219
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89
PAPA APA PAP A APA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
A PAPA APA PAP A + E+ + E D + G+
Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108
PAPA APA PAP+ A A ++ E + + + +
Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 227
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 69 APAAGAAPAGGPAPSTAAAPA 89
APA APA PAP+ AAPA
Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 30 ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88
A+ A +EP L A + S+ A P P APA PAP+ AAP
Sbjct: 99 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89
P A APA PAP+ A APA
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPA 182
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
A PAPA AAPA PAP+ A APA +A +ES E + G
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 63 VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98
V A PAPA APA PAP+ AAP E + A +
Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 219
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89
PAPA APA PAP A APA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
A PAPA APA PAP A + E+ + E D + G+
Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108
PAPA APA PAP+ A A ++ E + + + +
Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 227
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 69 APAAGAAPAGGPAPSTAAAPA 89
APA APA PAP+ AAPA
Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 30 ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88
A+ A +EP L A + S+ A P P APA PAP+ AAP
Sbjct: 99 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89
P A APA PAP+ A APA
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPA 182
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
A PAPA AAPA PAP+ A APA +A +ES E + G
Sbjct: 187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 231
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 63 VGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98
V A PAPA APA PAP+ AAP E + A +
Sbjct: 195 VAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQ 230
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89
PAPA APA PAP A APA
Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPA 201
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
A PAPA APA PAP A + E+ + E D + G+
Sbjct: 199 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 246
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDM 108
PAPA APA PAP+ A A ++ E + + + +
Sbjct: 198 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPL 238
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 69 APAAGAAPAGGPAPSTAAAPA 89
APA APA PAP+ AAPA
Sbjct: 179 APAPAPAPAPAPAPAPVAAPA 199
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 30 ALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAP 88
A+ A +EP L A + S+ A P P APA PAP+ AAP
Sbjct: 110 AVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 168
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA 89
P A APA PAP+ A APA
Sbjct: 172 PVAVAVLAPAPAPAPAPAPAPA 193
>gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f
[Homo sapiens]
Length = 194
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEK---------KVEAKKEESEESDDDMGFGLFD 114
P AA AAPA PAP+ A APA+ K K+E KE+ +E + F LFD
Sbjct: 10 PVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKE--AFLLFD 63
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 56 IGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107
+ +L+ N G+GG G GG A T + P+ E +A ++E EE DD+
Sbjct: 54 VAALLLNGGSGGGGGGGGGGVGGGEA-ETMSEPSPESASQAGEDEDEEEDDE 104
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 56 IGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107
+ +L+ N G+GG G GG A T + P+ E +A ++E EE DD+
Sbjct: 54 VAALLLNGGSGGGGGGGGGGVGGGEA-ETMSEPSPESASQAGEDEDEEEDDE 104
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 36.2 bits (82), Expect = 0.006
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 70 PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
PA P G P+ A A AEE+ VEA++EE ++ D + G
Sbjct: 86 PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102
P PA A G PAPS AP +E E
Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 36.2 bits (82), Expect = 0.006
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 70 PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
PA P G P+ A A AEE+ VEA++EE ++ D + G
Sbjct: 86 PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102
P PA A G PAPS AP +E E
Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 36.2 bits (82), Expect = 0.006
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 70 PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG 109
PA P G P+ A A AEE+ VEA++EE ++ D + G
Sbjct: 86 PAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKG 125
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE 102
P PA A G PAPS AP +E E
Sbjct: 42 PEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGE 76
>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
Length = 574
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDD 107
AP + AP P PS A APAE + V+ K E SD++
Sbjct: 327 APTSAPAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEE 365
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESD 105
APA +AP AP+ A A + KVEA EE+D
Sbjct: 331 APAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEETD 367
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 52 ANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAA-----PAEEKKVEAKKEESEESDD 106
A +G + + G GP AA P G A + AAA EE+++E +EE+E+ +D
Sbjct: 1635 AAAGLGLALGDAGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDED 1694
Query: 107 D 107
+
Sbjct: 1695 E 1695
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 45 GLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAA----APAEEKKVEAKKEE 100
G+F+ ALA+ +G L+C G PA A AA G A A E+K+ + K ++
Sbjct: 341 GMFSAALASGQLGPLMCQFGL--PAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKK 398
Query: 101 SEESD 105
EE D
Sbjct: 399 DEEED 403
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 45 GLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAA----APAEEKKVEAKKEE 100
G+F+ ALA+ +G L+C G PA A AA G A A E+K+ + K ++
Sbjct: 341 GMFSAALASGQLGPLMCQFGL--PAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKK 398
Query: 101 SEESD 105
EE D
Sbjct: 399 DEEED 403
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 45 GLFAKALANVNIGSLICNVGAG-GPAPAAGAAPAGGPAPSTAAAP 88
G+ + L N+ + C + AG GPAPA APA P ++AAP
Sbjct: 1138 GIIHRDLCLENLLLVHCTLQAGPGPAPAPAPAPAAAAPPCSSAAP 1182
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 64 GAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL 112
GAGG A G APA P A P +E +SE+S+ G L
Sbjct: 1078 GAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPSPSDSEDSESLGGASL 1126
>gi|4557038 atrial/embryonic alkali myosin light chain [Homo
sapiens]
Length = 197
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA---EEKKVEAKKEESEESDDDMGFGLFD 114
PAPA APA PAP PA + K++ ++ EE + F LFD
Sbjct: 17 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64
>gi|50845428 atrial/embryonic alkali myosin light chain [Homo
sapiens]
Length = 197
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 68 PAPAAGAAPAGGPAPSTAAAPA---EEKKVEAKKEESEESDDDMGFGLFD 114
PAPA APA PAP PA + K++ ++ EE + F LFD
Sbjct: 17 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 65 AGGPA-PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEE-----SDDDMGF 110
A GP+ A AA A P PS P EE++ A EE EE ++ +GF
Sbjct: 203 AQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGF 254
>gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
sapiens]
Length = 114
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 52 ANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDD 106
+ + G +C A A AGAAPA +P T P EE S E+ D
Sbjct: 36 SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGENGD 90
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEK 92
A GPAP A P PAP+ A APAEE+
Sbjct: 943 APGPAPLVSAVPMATPAPA-ARAPAEEE 969
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 65 AGGPAPAAGAAPAGGPAPSTAAAPAEEK 92
A GPAP A P PAP+ A APAEE+
Sbjct: 970 APGPAPLVSAVPMATPAPA-ARAPAEEE 996
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 44 PGLFAKALANVNIGSLICNVGAGGPAPAAGAAP--AGGPAPSTAAAPAEEKK 93
P L A A + + A PAPA AAP A PA + +AAP+ +K
Sbjct: 520 PALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQK 571
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 48 AKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPA 89
A A+A + A APA A A PA + AAAPA
Sbjct: 496 AAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPA 537
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,797,749
Number of Sequences: 37866
Number of extensions: 260634
Number of successful extensions: 5408
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 3859
Number of HSP's gapped (non-prelim): 1454
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.