Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506577
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506577 RAR-related orphan receptor A isoform c [Homo
sapiens]
(548 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens] 1122 0.0
gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens] 1014 0.0
gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens] 941 0.0
gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens] 937 0.0
gi|19743907 RAR-related orphan receptor B [Homo sapiens] 583 e-166
gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens] 456 e-128
gi|19743909 RAR-related orphan receptor C isoform a [Homo sapiens] 456 e-128
gi|224177493 nuclear receptor subfamily 1, group D, member 2 iso... 143 5e-34
gi|224177491 nuclear receptor subfamily 1, group D, member 2 iso... 143 5e-34
gi|189491739 nuclear receptor subfamily 2, group C, member 1 iso... 132 6e-31
gi|13430848 nuclear receptor subfamily 1, group D, member 1 [Hom... 129 9e-30
gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof... 124 2e-28
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo... 124 2e-28
gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens] 122 6e-28
gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens] 122 6e-28
gi|14916494 retinoic acid receptor, beta isoform 1 [Homo sapiens] 122 1e-27
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 120 3e-27
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 120 3e-27
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 120 3e-27
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 115 8e-26
gi|189491766 nuclear receptor subfamily 2, group C, member 1 iso... 114 2e-25
gi|73808084 nuclear receptor subfamily 2, group C, member 1 isof... 114 2e-25
gi|116284373 peroxisome proliferative activated receptor gamma i... 114 3e-25
gi|20336229 peroxisome proliferative activated receptor gamma is... 114 3e-25
gi|116284368 peroxisome proliferative activated receptor gamma i... 114 3e-25
gi|116284370 peroxisome proliferative activated receptor gamma i... 114 3e-25
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 114 3e-25
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof... 113 4e-25
gi|11415052 retinoid X receptor, beta [Homo sapiens] 113 4e-25
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 111 1e-24
>gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens]
Length = 548
Score = 1122 bits (2902), Expect = 0.0
Identities = 548/548 (100%), Positives = 548/548 (100%)
Query: 1 MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARSSSTCSSLSRLFWSQ 60
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARSSSTCSSLSRLFWSQ
Sbjct: 1 MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARSSSTCSSLSRLFWSQ 60
Query: 61 LEHINWDGATAKNFINLREFFSFLLPALRKAQIEIIPCKICGDKSSGIHYGVITCEGCKG 120
LEHINWDGATAKNFINLREFFSFLLPALRKAQIEIIPCKICGDKSSGIHYGVITCEGCKG
Sbjct: 61 LEHINWDGATAKNFINLREFFSFLLPALRKAQIEIIPCKICGDKSSGIHYGVITCEGCKG 120
Query: 121 FFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDS 180
FFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDS
Sbjct: 121 FFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDS 180
Query: 181 LYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKAD 240
LYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKAD
Sbjct: 181 LYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKAD 240
Query: 241 SAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEH 300
SAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEH
Sbjct: 241 SAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEH 300
Query: 301 LAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVV 360
LAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVV
Sbjct: 301 LAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVV 360
Query: 361 EFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLG 420
EFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLG
Sbjct: 361 EFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLG 420
Query: 421 CEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQH 480
CEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQH
Sbjct: 421 CEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQH 480
Query: 481 VLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEF 540
VLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEF
Sbjct: 481 VLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEF 540
Query: 541 EPAMQIDG 548
EPAMQIDG
Sbjct: 541 EPAMQIDG 548
>gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens]
Length = 556
Score = 1014 bits (2621), Expect = 0.0
Identities = 509/556 (91%), Positives = 513/556 (92%), Gaps = 8/556 (1%)
Query: 1 MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARSSSTCSSLSRL---F 57
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGAR L L
Sbjct: 1 MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARRDELFGILQILHQCI 60
Query: 58 WSQLEHINWDGATAKNFINLREFFSF-----LLPALRKAQIEIIPCKICGDKSSGIHYGV 112
S + G N + +S + AQIEIIPCKICGDKSSGIHYGV
Sbjct: 61 LSSGDAFVLTGVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGV 120
Query: 113 ITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 172
ITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR
Sbjct: 121 ITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 180
Query: 173 MSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGH 232
MSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGH
Sbjct: 181 MSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGH 240
Query: 233 TPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPT 292
TPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPT
Sbjct: 241 TPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPT 300
Query: 293 VSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKI 352
VSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKI
Sbjct: 301 VSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKI 360
Query: 353 TEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYAS 412
TEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYAS
Sbjct: 361 TEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYAS 420
Query: 413 PDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQ 472
PDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQ
Sbjct: 421 PDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQ 480
Query: 473 KIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLY 532
KIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLY
Sbjct: 481 KIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLY 540
Query: 533 KELFTSEFEPAMQIDG 548
KELFTSEFEPAMQIDG
Sbjct: 541 KELFTSEFEPAMQIDG 556
>gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens]
Length = 468
Score = 941 bits (2432), Expect = 0.0
Identities = 460/466 (98%), Positives = 462/466 (99%)
Query: 83 FLLPALRKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLI 142
+ + A KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLI
Sbjct: 3 YFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLI 62
Query: 143 DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPG 202
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPG
Sbjct: 63 DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPG 122
Query: 203 EAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDIN 262
EAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDIN
Sbjct: 123 EAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDIN 182
Query: 263 GIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQ 322
GIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQ
Sbjct: 183 GIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQ 242
Query: 323 ITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK 382
ITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
Sbjct: 243 ITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK 302
Query: 383 AGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTE 442
AGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTE
Sbjct: 303 AGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTE 362
Query: 443 DEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL 502
DEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL
Sbjct: 363 DEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL 422
Query: 503 RALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG 548
RALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
Sbjct: 423 RALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG 468
>gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]
Length = 523
Score = 937 bits (2421), Expect = 0.0
Identities = 457/458 (99%), Positives = 458/458 (100%)
Query: 91 AQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRC 150
+QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRC
Sbjct: 66 SQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRC 125
Query: 151 QHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPT 210
QHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPT
Sbjct: 126 QHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPT 185
Query: 211 YNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPIC 270
YNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPIC
Sbjct: 186 YNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPIC 245
Query: 271 DYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQ 330
DYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQ
Sbjct: 246 DYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQ 305
Query: 331 EEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVF 390
EEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVF
Sbjct: 306 EEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVF 365
Query: 391 IRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSA 450
IRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSA
Sbjct: 366 IRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSA 425
Query: 451 FVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHT 510
FVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHT
Sbjct: 426 FVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHT 485
Query: 511 EKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG 548
EKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
Sbjct: 486 EKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG 523
>gi|19743907 RAR-related orphan receptor B [Homo sapiens]
Length = 459
Score = 583 bits (1503), Expect = e-166
Identities = 291/458 (63%), Positives = 353/458 (77%), Gaps = 14/458 (3%)
Query: 90 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNR 149
+AQIE+IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ+NA+YSCPRQ+NCLIDRT+RNR
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNR 61
Query: 150 CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTP 209
CQHCRLQKCLA+GMSRDAVKFGRMSKKQRDSLYAEVQKH+ Q+ Q QQQ GEAE L
Sbjct: 62 CQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQ-QRLQEQRQQQSGEAEALAR 120
Query: 210 TYNIS-ANGLTELHDDLSN-YIDGHTPEGSKADSAVSSFYLDI---QPSPDQSGLDINGI 264
Y+ S +NGL+ L+++ S Y +GH + K++ Y ++ QPSPDQSGLD+ GI
Sbjct: 121 VYSSSISNGLSNLNNETSGTYANGHVIDLPKSEG-----YYNVDSGQPSPDQSGLDMTGI 175
Query: 265 KP---EPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQ 321
K EPI D T F Y SF NG+ +P ++M E++ +AQNI KSHLETCQY EEL
Sbjct: 176 KQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELH 235
Query: 322 QITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLL 381
Q+ WQT EEI+ YQ+K RE +WQ CAI+IT AIQYVVEFAKRI GFMELCQNDQI+LL
Sbjct: 236 QLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLL 295
Query: 382 KAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLT 441
K+G LEVV +RMCRAF+ NNTV F+GKY +FK+LG +D ++ F+F K+LCS+ LT
Sbjct: 296 KSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLT 355
Query: 442 EDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVST 501
E+EIALFS+ VL+S DR+WL E K++KLQ+KI ALQHV+QKNH +D L KLI K+ T
Sbjct: 356 EEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPT 415
Query: 502 LRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSE 539
+ A+C H EKL FK +P+IV FPPLYKELF +
Sbjct: 416 ITAVCNLHGEKLQVFKQSHPEIVNTLFPPLYKELFNPD 453
>gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens]
Length = 497
Score = 456 bits (1173), Expect = e-128
Identities = 242/491 (49%), Positives = 317/491 (64%), Gaps = 41/491 (8%)
Query: 90 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNR 149
+ QIE+IPCKICGDKSSGIHYGVITCEGCKGFFRRSQ+ NA YSC RQ+NC IDRTSRNR
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNR 61
Query: 150 CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQ----------- 198
CQHCRLQKCLA+GMSRDAVKFGRMSKKQRDSL+AEVQK Q+QQ+ +
Sbjct: 62 CQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQQEPVVKTPPAGAQ 121
Query: 199 --------------QQPGEAEPLTPTYNISANGLTELHDDLSNYIDG------------- 231
Q P + P P + GL + +Y +
Sbjct: 122 GADTLTYTLGLPDGQLPLGSSPDLPEASACPPGLLKASGSGPSYSNNLAKAGLNGASCHL 181
Query: 232 -HTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETS 290
++PE KA+ S + Q +PD+ GL + + + + SF + +
Sbjct: 182 EYSPERGKAEGRESFYSTGSQLTPDRCGLRFEEHRHPGLGELGQGPDSYGSPSFRSTPEA 241
Query: 291 PTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAI 350
P S+ E+EHL Q++ KS+ ETCQ E+L + F +EE+ YQ K MW+ CA
Sbjct: 242 PYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAH 301
Query: 351 KITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKY 410
+TEAIQYVVEFAKR+ GFMELCQNDQIVLLKAG++EVV +RMCRA+++ N TV+F+GKY
Sbjct: 302 HLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKY 361
Query: 411 ASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKL 470
++F++LGC + IS +F+F SL ++H +EDEIAL++A VL++A R LQEK K+E+L
Sbjct: 362 GGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQL 421
Query: 471 QQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPP 530
Q ++LA H L K HR+ IL KL K LR+LC +H E+L F+ ++P +V+ FPP
Sbjct: 422 QYNLELAFHHHLCKTHRQ-SILAKLPPK-GKLRSLCSQHVERLQIFQHLHPIVVQAAFPP 479
Query: 531 LYKELFTSEFE 541
LYKELF++E E
Sbjct: 480 LYKELFSTETE 490
>gi|19743909 RAR-related orphan receptor C isoform a [Homo sapiens]
Length = 518
Score = 456 bits (1172), Expect = e-128
Identities = 242/490 (49%), Positives = 317/490 (64%), Gaps = 41/490 (8%)
Query: 91 AQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRC 150
+QIE+IPCKICGDKSSGIHYGVITCEGCKGFFRRSQ+ NA YSC RQ+NC IDRTSRNRC
Sbjct: 24 SQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRC 83
Query: 151 QHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQ------------ 198
QHCRLQKCLA+GMSRDAVKFGRMSKKQRDSL+AEVQK Q+QQ+ +
Sbjct: 84 QHCRLQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQQEPVVKTPPAGAQG 143
Query: 199 -------------QQPGEAEPLTPTYNISANGLTELHDDLSNYIDG-------------- 231
Q P + P P + GL + +Y +
Sbjct: 144 ADTLTYTLGLPDGQLPLGSSPDLPEASACPPGLLKASGSGPSYSNNLAKAGLNGASCHLE 203
Query: 232 HTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSP 291
++PE KA+ S + Q +PD+ GL + + + + SF + +P
Sbjct: 204 YSPERGKAEGRESFYSTGSQLTPDRCGLRFEEHRHPGLGELGQGPDSYGSPSFRSTPEAP 263
Query: 292 TVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIK 351
S+ E+EHL Q++ KS+ ETCQ E+L + F +EE+ YQ K MW+ CA
Sbjct: 264 YASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHH 323
Query: 352 ITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYA 411
+TEAIQYVVEFAKR+ GFMELCQNDQIVLLKAG++EVV +RMCRA+++ N TV+F+GKY
Sbjct: 324 LTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYG 383
Query: 412 SPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQ 471
++F++LGC + IS +F+F SL ++H +EDEIAL++A VL++A R LQEK K+E+LQ
Sbjct: 384 GMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQ 443
Query: 472 QKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPL 531
++LA H L K HR+ IL KL K LR+LC +H E+L F+ ++P +V+ FPPL
Sbjct: 444 YNLELAFHHHLCKTHRQ-SILAKLPPK-GKLRSLCSQHVERLQIFQHLHPIVVQAAFPPL 501
Query: 532 YKELFTSEFE 541
YKELF++E E
Sbjct: 502 YKELFSTETE 511
>gi|224177493 nuclear receptor subfamily 1, group D, member 2
isoform 2 [Homo sapiens]
Length = 504
Score = 143 bits (360), Expect = 5e-34
Identities = 77/182 (42%), Positives = 120/182 (65%), Gaps = 2/182 (1%)
Query: 338 NKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAF 397
+K +W+ ++ T A++ VVEFAKRI GF +L Q+DQ+ LLKAG+ EV+ +R F
Sbjct: 320 HKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLF 379
Query: 398 DSQNNTVYF-DGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSA 456
D++ TV F GK S D S+G D ++ +FEF + L ++ L+++E++LF+A VL+SA
Sbjct: 380 DAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSA 439
Query: 457 DRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKLMA 515
DRS ++ +E LQ+ + AL+ ++ KNH E I TKL+ K+ LR+L H+E+L+A
Sbjct: 440 DRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLA 499
Query: 516 FK 517
FK
Sbjct: 500 FK 501
Score = 124 bits (312), Expect = 2e-28
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 4/109 (3%)
Query: 95 IIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHC 153
++ CK+CGD +SG HYGV CEGCKGFFRRS Q N Y C + +NC I R +RNRCQ C
Sbjct: 25 VLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQC 84
Query: 154 RLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQ---KHRMQQQQRDHQQ 199
R +KCL+VGMSRDAV+FGR+ K+++ + E+Q K M Q H Q
Sbjct: 85 RFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQ 133
>gi|224177491 nuclear receptor subfamily 1, group D, member 2
isoform 1 [Homo sapiens]
Length = 579
Score = 143 bits (360), Expect = 5e-34
Identities = 77/182 (42%), Positives = 120/182 (65%), Gaps = 2/182 (1%)
Query: 338 NKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAF 397
+K +W+ ++ T A++ VVEFAKRI GF +L Q+DQ+ LLKAG+ EV+ +R F
Sbjct: 395 HKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLF 454
Query: 398 DSQNNTVYF-DGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSA 456
D++ TV F GK S D S+G D ++ +FEF + L ++ L+++E++LF+A VL+SA
Sbjct: 455 DAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSA 514
Query: 457 DRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKLMA 515
DRS ++ +E LQ+ + AL+ ++ KNH E I TKL+ K+ LR+L H+E+L+A
Sbjct: 515 DRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLA 574
Query: 516 FK 517
FK
Sbjct: 575 FK 576
Score = 124 bits (312), Expect = 2e-28
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 4/109 (3%)
Query: 95 IIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHC 153
++ CK+CGD +SG HYGV CEGCKGFFRRS Q N Y C + +NC I R +RNRCQ C
Sbjct: 100 VLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQC 159
Query: 154 RLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQ---KHRMQQQQRDHQQ 199
R +KCL+VGMSRDAV+FGR+ K+++ + E+Q K M Q H Q
Sbjct: 160 RFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQ 208
>gi|189491739 nuclear receptor subfamily 2, group C, member 1
isoform a [Homo sapiens]
Length = 603
Score = 132 bits (333), Expect = 6e-31
Identities = 129/481 (26%), Positives = 217/481 (45%), Gaps = 71/481 (14%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C +CGDK+SG HYG +TCEGCKGFF+RS + N YSC K+C+I++ RNRCQ+CRLQ+
Sbjct: 113 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQR 172
Query: 158 CLAVGMSRDAVKFGR----MSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEP--LTPTY 211
C+A GM +D+V+ R +S+++ + A +K +++ R P A P +T +
Sbjct: 173 CIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLR----SPLTATPTFVTDSE 228
Query: 212 NISANGLTELHDDLSNYIDGHTPEGSKADSAV-------------SSFYLDIQPSPDQSG 258
+ + GL D +++ H P G K +SAV S ++ S G
Sbjct: 229 STRSTGLL----DSGMFMNIH-PSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLG 283
Query: 259 --LDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQY- 315
D++ E + ++ C F +T+ VS A + LA+ ++ CQ
Sbjct: 284 KTKDLSQNSNEMSMIESLSNDDTSLCEFQEMQTNGDVSRA-FDTLAKALNPGESTACQSS 342
Query: 316 ---LREELQQITWQTFLQEEIENYQNKQREVMWQL-CAIKITEA--------IQYVVEFA 363
+ + IT + + NY K+ ++ A ++T + Y+ E A
Sbjct: 343 VAGMEGSVHLITGDSSI-----NYTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESA 397
Query: 364 KR-----------IDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQN---------NT 403
R I F L Q + I L+KA E+ + + + + N N
Sbjct: 398 SRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNC 457
Query: 404 VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQE 463
++ + + + I + EF S+ + + E A A VL S D L+
Sbjct: 458 LHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLEN 517
Query: 464 KVKIEKLQQKIQLALQHVLQKNHREDGI-LTKLICKVSTLRALCGRHTEKLMAFKAIYPD 522
+IEK Q+K + Q + K + +D L++L+ ++ LR + TE+L FK + +
Sbjct: 518 MEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELF-FKGLIGN 576
Query: 523 I 523
I
Sbjct: 577 I 577
>gi|13430848 nuclear receptor subfamily 1, group D, member 1 [Homo
sapiens]
Length = 614
Score = 129 bits (323), Expect = 9e-30
Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 13/179 (7%)
Query: 34 SATPTPAGEGARSSSTCSSLSRLFWSQLEHINWDGATAKNFINLREFFSFLLPALRKAQI 93
S P+ + +G+ SSS+ SS S + ++G+ + E S + P+ + I
Sbjct: 70 SIPPSLSDDGSPSSSSSSSSSSSSF-------YNGSPPGSLQVAMEDSSRVSPSKSTSNI 122
Query: 94 E-----IIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSR 147
++ CK+CGD +SG HYGV CEGCKGFFRRS Q N Y C + +NC I R +R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 148 NRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEP 206
NRCQ CR +KCL+VGMSRDAV+FGR+ K+++ + AE+Q + Q P E P
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSP 241
Score = 128 bits (321), Expect = 2e-29
Identities = 70/176 (39%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 344 MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNT 403
+W+ ++ T A++ VVEFAK I GF +L Q+DQ+ LLKAG+ EV+ +R F+ ++ T
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 404 VYFDGKYA-SPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQ 462
V F + S ++G D +S +F+F + L S+ LTE+E+ LF+A VL+SADRS ++
Sbjct: 495 VMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGME 554
Query: 463 EKVKIEKLQQKIQLALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKLMAFK 517
+E+LQ+ + AL+ ++ KN E TKL+ K+ LR L H+EKL++F+
Sbjct: 555 NSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFR 610
>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
1 [Homo sapiens]
Length = 541
Score = 124 bits (311), Expect = 2e-28
Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C +CGDK SG HYG++TCE CKGFF+R+ Q+N Y+C +NC ID+T R RC +CR QK
Sbjct: 86 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
Query: 158 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 202
CL+VGM +AV KFG M K KQ+ +++ + Q P
Sbjct: 146 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 205
Query: 203 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 260
+ + NI ++ GL H L +P + S + +Q
Sbjct: 206 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 265
Query: 261 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 320
IK E YT + S+ ++ T S A + HL + K + E
Sbjct: 266 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 317
Query: 321 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 380
Q +LQ+E N ++ + L + + +VE+A+ F EL +DQ+ L
Sbjct: 318 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 377
Query: 381 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 434
L+ E++ + + + +++ G+ + S + +S E
Sbjct: 378 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 437
Query: 435 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 493
L S+ + E VL S D L+ +E +Q+++ AL N+ ++
Sbjct: 438 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 497
Query: 494 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 523
+L+ ++ +RA+ E+ + +K + D+
Sbjct: 498 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 526
>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
2 [Homo sapiens]
Length = 495
Score = 124 bits (311), Expect = 2e-28
Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C +CGDK SG HYG++TCE CKGFF+R+ Q+N Y+C +NC ID+T R RC +CR QK
Sbjct: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
Query: 158 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 202
CL+VGM +AV KFG M K KQ+ +++ + Q P
Sbjct: 100 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 159
Query: 203 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 260
+ + NI ++ GL H L +P + S + +Q
Sbjct: 160 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 219
Query: 261 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 320
IK E YT + S+ ++ T S A + HL + K + E
Sbjct: 220 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 271
Query: 321 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 380
Q +LQ+E N ++ + L + + +VE+A+ F EL +DQ+ L
Sbjct: 272 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 331
Query: 381 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 434
L+ E++ + + + +++ G+ + S + +S E
Sbjct: 332 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 391
Query: 435 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 493
L S+ + E VL S D L+ +E +Q+++ AL N+ ++
Sbjct: 392 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 451
Query: 494 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 523
+L+ ++ +RA+ E+ + +K + D+
Sbjct: 452 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 480
>gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens]
Length = 443
Score = 122 bits (307), Expect = 6e-28
Identities = 52/81 (64%), Positives = 64/81 (79%)
Query: 97 PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQ 156
PC +C DKSSG HYGV +CEGCKGFFRRS Q N Y+C R KNC+I++ +RNRCQ+CRLQ
Sbjct: 78 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 137
Query: 157 KCLAVGMSRDAVKFGRMSKKQ 177
KC VGMS++AV+ R KK+
Sbjct: 138 KCFEVGMSKEAVRNDRNKKKK 158
Score = 94.4 bits (233), Expect = 2e-19
Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 12/241 (4%)
Query: 297 ELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAI 356
+LE L +SK+H ET L + L + T + ++ +W + T+ I
Sbjct: 174 QLEELITKVSKAHQETFPSLCQ-LGKYTTNSSADHRVQLDLG-----LWDKFSELATKCI 227
Query: 357 QYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDV 415
+VEFAKR+ GF L DQI LLKA L+++ +R+C + + +T+ F DG +
Sbjct: 228 IKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQ 287
Query: 416 FKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQ 475
+ G VF F L + + + E L SA L+ DR L+E K++KLQ+ +
Sbjct: 288 MHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLL 347
Query: 476 LALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKE 534
AL+ + ++ + + +++ K++ LR + + E+ + K P PPL +E
Sbjct: 348 EALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPG----PMPPLIRE 403
Query: 535 L 535
+
Sbjct: 404 M 404
>gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]
Length = 454
Score = 122 bits (307), Expect = 6e-28
Identities = 52/81 (64%), Positives = 64/81 (79%)
Query: 97 PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQ 156
PC +C DKSSG HYGV +CEGCKGFFRRS Q N Y+C R KNC+I++ +RNRCQ+CRLQ
Sbjct: 89 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 148
Query: 157 KCLAVGMSRDAVKFGRMSKKQ 177
KC VGMS++AV+ R KK+
Sbjct: 149 KCFEVGMSKEAVRNDRNKKKK 169
Score = 94.4 bits (233), Expect = 2e-19
Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 12/241 (4%)
Query: 297 ELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAI 356
+LE L +SK+H ET L + L + T + ++ +W + T+ I
Sbjct: 185 QLEELITKVSKAHQETFPSLCQ-LGKYTTNSSADHRVQLDLG-----LWDKFSELATKCI 238
Query: 357 QYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDV 415
+VEFAKR+ GF L DQI LLKA L+++ +R+C + + +T+ F DG +
Sbjct: 239 IKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQ 298
Query: 416 FKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQ 475
+ G VF F L + + + E L SA L+ DR L+E K++KLQ+ +
Sbjct: 299 MHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLL 358
Query: 476 LALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKE 534
AL+ + ++ + + +++ K++ LR + + E+ + K P PPL +E
Sbjct: 359 EALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPG----PMPPLIRE 414
Query: 535 L 535
+
Sbjct: 415 M 415
>gi|14916494 retinoic acid receptor, beta isoform 1 [Homo sapiens]
Length = 448
Score = 122 bits (305), Expect = 1e-27
Identities = 54/100 (54%), Positives = 69/100 (69%)
Query: 97 PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQ 156
PC +C DKSSG HYGV CEGCKGFFRRS Q N Y+C R KNC+I++ +RNRCQ+CRLQ
Sbjct: 80 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQ 139
Query: 157 KCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRD 196
KC VGMS+++V+ R KK+ S + + M + D
Sbjct: 140 KCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDD 179
Score = 100 bits (250), Expect = 3e-21
Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 12/242 (4%)
Query: 296 AELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEA 355
AEL+ L + I K+H ET L + + T +++ + +W + T+
Sbjct: 175 AELDDLTEKIRKAHQETFPSLCQLGKYTT------NSSADHRVRLDLGLWDKFSELATKC 228
Query: 356 IQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPD 414
I +VEFAKR+ GF L DQI LLKA L+++ +R+C + + +T+ F DG +
Sbjct: 229 IIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRT 288
Query: 415 VFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKI 474
+ G VF F L + + + E L SA L+ DR L+E K++KLQ+ +
Sbjct: 289 QMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPL 348
Query: 475 QLALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYK 533
AL+ ++ ++ + + K++ K++ LR++ + E+++ K P PPL +
Sbjct: 349 LEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPG----SMPPLIQ 404
Query: 534 EL 535
E+
Sbjct: 405 EM 406
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 120 bits (301), Expect = 3e-27
Identities = 51/81 (62%), Positives = 63/81 (77%)
Query: 97 PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQ 156
PC +C DKSSG HYGV CEGCKGFFRRS Q N Y+C R KNC+I++ +RNRCQ+CRLQ
Sbjct: 87 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 146
Query: 157 KCLAVGMSRDAVKFGRMSKKQ 177
KC VGMS+++V+ R KK+
Sbjct: 147 KCFEVGMSKESVRNDRNKKKK 167
Score = 89.4 bits (220), Expect = 8e-18
Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 20/245 (8%)
Query: 297 ELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVM----WQLCAIKI 352
E+ L + + K+H ET L + L + N ++QR + W +
Sbjct: 183 EVGELIEKVRKAHQETFPALCQ----------LGKYTTNNSSEQRVSLDIDLWDKFSELS 232
Query: 353 TEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYA 411
T+ I VEFAK++ GF L DQI LLKA L+++ +R+C + + +T+ F DG
Sbjct: 233 TKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTL 292
Query: 412 SPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQ 471
+ + G VF F L + + + E L SA L+ DR L++ +++ LQ
Sbjct: 293 NRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 352
Query: 472 QKIQLALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPP 530
+ + AL+ +V ++ + K++ K++ LR++ + E+++ K P PP
Sbjct: 353 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPG----SMPP 408
Query: 531 LYKEL 535
L +E+
Sbjct: 409 LIQEM 413
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 120 bits (301), Expect = 3e-27
Identities = 51/81 (62%), Positives = 63/81 (77%)
Query: 97 PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQ 156
PC +C DKSSG HYGV CEGCKGFFRRS Q N Y+C R KNC+I++ +RNRCQ+CRLQ
Sbjct: 82 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 141
Query: 157 KCLAVGMSRDAVKFGRMSKKQ 177
KC VGMS+++V+ R KK+
Sbjct: 142 KCFEVGMSKESVRNDRNKKKK 162
Score = 89.4 bits (220), Expect = 8e-18
Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 20/245 (8%)
Query: 297 ELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVM----WQLCAIKI 352
E+ L + + K+H ET L + L + N ++QR + W +
Sbjct: 178 EVGELIEKVRKAHQETFPALCQ----------LGKYTTNNSSEQRVSLDIDLWDKFSELS 227
Query: 353 TEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYA 411
T+ I VEFAK++ GF L DQI LLKA L+++ +R+C + + +T+ F DG
Sbjct: 228 TKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTL 287
Query: 412 SPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQ 471
+ + G VF F L + + + E L SA L+ DR L++ +++ LQ
Sbjct: 288 NRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 347
Query: 472 QKIQLALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPP 530
+ + AL+ +V ++ + K++ K++ LR++ + E+++ K P PP
Sbjct: 348 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPG----SMPP 403
Query: 531 LYKEL 535
L +E+
Sbjct: 404 LIQEM 408
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 120 bits (301), Expect = 3e-27
Identities = 51/81 (62%), Positives = 63/81 (77%)
Query: 97 PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQ 156
PC +C DKSSG HYGV CEGCKGFFRRS Q N Y+C R KNC+I++ +RNRCQ+CRLQ
Sbjct: 87 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 146
Query: 157 KCLAVGMSRDAVKFGRMSKKQ 177
KC VGMS+++V+ R KK+
Sbjct: 147 KCFEVGMSKESVRNDRNKKKK 167
Score = 89.4 bits (220), Expect = 8e-18
Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 20/245 (8%)
Query: 297 ELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVM----WQLCAIKI 352
E+ L + + K+H ET L + L + N ++QR + W +
Sbjct: 183 EVGELIEKVRKAHQETFPALCQ----------LGKYTTNNSSEQRVSLDIDLWDKFSELS 232
Query: 353 TEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYA 411
T+ I VEFAK++ GF L DQI LLKA L+++ +R+C + + +T+ F DG
Sbjct: 233 TKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTL 292
Query: 412 SPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQ 471
+ + G VF F L + + + E L SA L+ DR L++ +++ LQ
Sbjct: 293 NRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 352
Query: 472 QKIQLALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPP 530
+ + AL+ +V ++ + K++ K++ LR++ + E+++ K P PP
Sbjct: 353 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPG----SMPP 408
Query: 531 LYKEL 535
L +E+
Sbjct: 409 LIQEM 413
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 115 bits (289), Expect = 8e-26
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 16/127 (12%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C ICGD+SSG HYGV +CEGCKGFF+R+ + + TY+C K+CLID+ RNRCQ+CR QK
Sbjct: 135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQK 194
Query: 158 CLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGE--------AEPLTP 209
CLA+GM R+AV+ R K R+ ++ ++ ++ P E EP T
Sbjct: 195 CLAMGMKREAVQEERQRGKDRN-------ENEVESTSSANEDMPVERILEAELAVEPKTE 247
Query: 210 TYNISAN 216
TY + AN
Sbjct: 248 TY-VEAN 253
Score = 57.0 bits (136), Expect = 4e-08
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Query: 359 VVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMC-RAFDSQNNTVYFDGKYASPDVFK 417
+VE+AKRI F EL +DQ++LL+AG E++ R+ ++ + G + +
Sbjct: 279 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 338
Query: 418 SLGCEDFISFVF-EFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQL 476
S G V E + M + + E+ A VL + D L ++E L++K+
Sbjct: 339 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 398
Query: 477 ALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAI 519
+L+ + K + G KL+ ++ LR++ + E L FK I
Sbjct: 399 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 442
>gi|189491766 nuclear receptor subfamily 2, group C, member 1
isoform c [Homo sapiens]
Length = 483
Score = 114 bits (286), Expect = 2e-25
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 15/152 (9%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C +CGDK+SG HYG +TCEGCKGFF+RS + N YSC K+C+I++ RNRCQ+CRLQ+
Sbjct: 113 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQR 172
Query: 158 CLAVGMSRDAVKFGR----MSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEP--LTPTY 211
C+A GM +D+V+ R +S+++ + A +K +++ R P A P +T +
Sbjct: 173 CIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLR----SPLTATPTFVTDSE 228
Query: 212 NISANGLTELHDDLSNYIDGHTPEGSKADSAV 243
+ + GL D +++ H P G K +SAV
Sbjct: 229 STRSTGLL----DSGMFMNIH-PSGVKTESAV 255
>gi|73808084 nuclear receptor subfamily 2, group C, member 1 isoform
b [Homo sapiens]
Length = 467
Score = 114 bits (286), Expect = 2e-25
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 15/152 (9%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C +CGDK+SG HYG +TCEGCKGFF+RS + N YSC K+C+I++ RNRCQ+CRLQ+
Sbjct: 113 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQR 172
Query: 158 CLAVGMSRDAVKFGR----MSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEP--LTPTY 211
C+A GM +D+V+ R +S+++ + A +K +++ R P A P +T +
Sbjct: 173 CIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLR----SPLTATPTFVTDSE 228
Query: 212 NISANGLTELHDDLSNYIDGHTPEGSKADSAV 243
+ + GL D +++ H P G K +SAV
Sbjct: 229 STRSTGLL----DSGMFMNIH-PSGVKTESAV 255
>gi|116284373 peroxisome proliferative activated receptor gamma
isoform 1 [Homo sapiens]
Length = 477
Score = 114 bits (284), Expect = 3e-25
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCR 154
I C++CGDK+SG HYGV CEGCKGFFRR+ + Y C NC I + SRN+CQ+CR
Sbjct: 109 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCR 166
Query: 155 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV 185
QKCLAVGMS +A++FGRM + +++ L AE+
Sbjct: 167 FQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI 197
Score = 92.8 bits (229), Expect = 7e-19
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Query: 331 EEIENYQNKQREV---MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE 387
+ I Q + +EV ++Q C + EA+Q + E+AK I GF+ L NDQ+ LLK G E
Sbjct: 265 KHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHE 324
Query: 388 VVFIRMCRAFDSQNNTVYFDGKYASPDVFKSL--GCEDFISFVFEFGKSLCSMHLTEDEI 445
+++ + + + + + + KSL DF+ FEF ++ L + ++
Sbjct: 325 IIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDL 384
Query: 446 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDG-ILTKLICKVSTLRA 504
A+F A +++S DR L IE +Q + AL+ L+ NH E + KL+ K++ LR
Sbjct: 385 AIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQ 444
Query: 505 LCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 536
+ H + L K D + LH PL +E++
Sbjct: 445 IVTEHVQLLQVIKKTETD-MSLH--PLLQEIY 473
>gi|20336229 peroxisome proliferative activated receptor gamma
isoform 2 [Homo sapiens]
Length = 505
Score = 114 bits (284), Expect = 3e-25
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCR 154
I C++CGDK+SG HYGV CEGCKGFFRR+ + Y C NC I + SRN+CQ+CR
Sbjct: 137 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCR 194
Query: 155 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV 185
QKCLAVGMS +A++FGRM + +++ L AE+
Sbjct: 195 FQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI 225
Score = 92.8 bits (229), Expect = 7e-19
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Query: 331 EEIENYQNKQREV---MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE 387
+ I Q + +EV ++Q C + EA+Q + E+AK I GF+ L NDQ+ LLK G E
Sbjct: 293 KHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHE 352
Query: 388 VVFIRMCRAFDSQNNTVYFDGKYASPDVFKSL--GCEDFISFVFEFGKSLCSMHLTEDEI 445
+++ + + + + + + KSL DF+ FEF ++ L + ++
Sbjct: 353 IIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDL 412
Query: 446 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDG-ILTKLICKVSTLRA 504
A+F A +++S DR L IE +Q + AL+ L+ NH E + KL+ K++ LR
Sbjct: 413 AIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQ 472
Query: 505 LCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 536
+ H + L K D + LH PL +E++
Sbjct: 473 IVTEHVQLLQVIKKTETD-MSLH--PLLQEIY 501
>gi|116284368 peroxisome proliferative activated receptor gamma
isoform 1 [Homo sapiens]
Length = 477
Score = 114 bits (284), Expect = 3e-25
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCR 154
I C++CGDK+SG HYGV CEGCKGFFRR+ + Y C NC I + SRN+CQ+CR
Sbjct: 109 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCR 166
Query: 155 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV 185
QKCLAVGMS +A++FGRM + +++ L AE+
Sbjct: 167 FQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI 197
Score = 92.8 bits (229), Expect = 7e-19
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Query: 331 EEIENYQNKQREV---MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE 387
+ I Q + +EV ++Q C + EA+Q + E+AK I GF+ L NDQ+ LLK G E
Sbjct: 265 KHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHE 324
Query: 388 VVFIRMCRAFDSQNNTVYFDGKYASPDVFKSL--GCEDFISFVFEFGKSLCSMHLTEDEI 445
+++ + + + + + + KSL DF+ FEF ++ L + ++
Sbjct: 325 IIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDL 384
Query: 446 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDG-ILTKLICKVSTLRA 504
A+F A +++S DR L IE +Q + AL+ L+ NH E + KL+ K++ LR
Sbjct: 385 AIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQ 444
Query: 505 LCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 536
+ H + L K D + LH PL +E++
Sbjct: 445 IVTEHVQLLQVIKKTETD-MSLH--PLLQEIY 473
>gi|116284370 peroxisome proliferative activated receptor gamma
isoform 1 [Homo sapiens]
Length = 477
Score = 114 bits (284), Expect = 3e-25
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCR 154
I C++CGDK+SG HYGV CEGCKGFFRR+ + Y C NC I + SRN+CQ+CR
Sbjct: 109 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCR 166
Query: 155 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV 185
QKCLAVGMS +A++FGRM + +++ L AE+
Sbjct: 167 FQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI 197
Score = 92.8 bits (229), Expect = 7e-19
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Query: 331 EEIENYQNKQREV---MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE 387
+ I Q + +EV ++Q C + EA+Q + E+AK I GF+ L NDQ+ LLK G E
Sbjct: 265 KHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHE 324
Query: 388 VVFIRMCRAFDSQNNTVYFDGKYASPDVFKSL--GCEDFISFVFEFGKSLCSMHLTEDEI 445
+++ + + + + + + KSL DF+ FEF ++ L + ++
Sbjct: 325 IIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDL 384
Query: 446 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDG-ILTKLICKVSTLRA 504
A+F A +++S DR L IE +Q + AL+ L+ NH E + KL+ K++ LR
Sbjct: 385 AIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQ 444
Query: 505 LCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 536
+ H + L K D + LH PL +E++
Sbjct: 445 IVTEHVQLLQVIKKTETD-MSLH--PLLQEIY 473
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 114 bits (284), Expect = 3e-25
Identities = 50/82 (60%), Positives = 61/82 (74%)
Query: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRL 155
I C +CGDKSSG HYG TCEGCK FF+RS + N TY+C +NC ID+ RN+CQ+CRL
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRL 143
Query: 156 QKCLAVGMSRDAVKFGRMSKKQ 177
+KCL VGM R+AV+ GRM Q
Sbjct: 144 KKCLKVGMRREAVQRGRMPPTQ 165
Score = 46.2 bits (108), Expect = 8e-05
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 360 VEFAKRIDGFMELCQNDQIVLLKA--GSLEVVFIRMCRAFDSQNNTVYFDGKYASP-DVF 416
VE+A+ I F +L DQ+ LL+ L V+ C + G +ASP
Sbjct: 231 VEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAD 290
Query: 417 KSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQL 476
+ + D I E + L ++H+ E + A VL ++D L + IE LQ+K Q
Sbjct: 291 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQC 350
Query: 477 ALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKLMAFKAI 519
AL+ ++ + + KL+ ++ +LR + E+L + +
Sbjct: 351 ALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 394
>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
a [Homo sapiens]
Length = 414
Score = 113 bits (283), Expect = 4e-25
Identities = 50/89 (56%), Positives = 65/89 (73%)
Query: 89 RKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRN 148
++ Q + I C +CGDKSSG HYG TCEGCK FF+RS + N +Y+C +NC ID+ RN
Sbjct: 70 KQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRN 129
Query: 149 RCQHCRLQKCLAVGMSRDAVKFGRMSKKQ 177
+CQ+CRL+KCL VGM R+AV+ GRM Q
Sbjct: 130 QCQYCRLKKCLKVGMRREAVQRGRMPPTQ 158
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 360 VEFAKRIDGFMELCQNDQIVLLKA--GSLEVVFIRMCRAFDSQNNTVYFDGKYASP-DVF 416
VE+A+ I F +L DQ+ LL+ L V+ C + G +ASP
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAD 283
Query: 417 KSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQL 476
+ + D I E + L ++H+ E + A VL ++D L + +E LQ+K Q
Sbjct: 284 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQC 343
Query: 477 ALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKLMAFKAI 519
AL+ ++ + + KL+ ++ +LR + E+L + +
Sbjct: 344 ALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 387
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 113 bits (283), Expect = 4e-25
Identities = 48/82 (58%), Positives = 61/82 (74%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C ICGD+SSG HYGV +CEGCKGFF+R+ + + TYSC K+C +D+ RNRCQ+CR QK
Sbjct: 205 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQK 264
Query: 158 CLAVGMSRDAVKFGRMSKKQRD 179
CLA GM R+AV+ R K +D
Sbjct: 265 CLATGMKREAVQEERQRGKDKD 286
Score = 58.9 bits (141), Expect = 1e-08
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 359 VVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMC-RAFDSQNNTVYFDGKYASPDVFK 417
+VE+AKRI F L +DQ++LL+AG E++ R+ D ++ + G + +
Sbjct: 350 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 409
Query: 418 SLGCEDFISFVF-EFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQL 476
S G V E + M + + E+ A +L + D L ++E L++K+
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 477 ALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAI 519
+L+ + QK + G KL+ ++ LR++ + E L FK I
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 513
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 111 bits (278), Expect = 1e-24
Identities = 48/87 (55%), Positives = 63/87 (72%)
Query: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
C ICGD+SSG HYGV +CEGCKGFF+R+ + + Y+C K+CLID+ RNRCQ+CR QK
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQK 198
Query: 158 CLAVGMSRDAVKFGRMSKKQRDSLYAE 184
CL +GM R+AV+ R ++R AE
Sbjct: 199 CLVMGMKREAVQEERQRSRERAESEAE 225
Score = 60.8 bits (146), Expect = 3e-09
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
Query: 335 NYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMC 394
N +N + + +C + +VE+AKRI F +L DQ++LL+AG E++
Sbjct: 257 NMENSTNDPVTNICHAADKQLFT-LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS 315
Query: 395 -RAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVF-EFGKSLCSMHLTEDEIALFSAFV 452
R+ Q+ + G + S G V E + M + + E+ A V
Sbjct: 316 HRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIV 375
Query: 453 LMSADRSWLQEKVKIEKLQQKIQLALQ-HVLQKNHREDGILTKLICKVSTLRALCGRHTE 511
L + D L ++E L++K+ L+ + QK + G KL+ ++ LR++ + E
Sbjct: 376 LFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLE 435
Query: 512 KLMAFKAI 519
L FK I
Sbjct: 436 HLFFFKLI 443
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,802,757
Number of Sequences: 37866
Number of extensions: 995390
Number of successful extensions: 4379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3952
Number of HSP's gapped (non-prelim): 312
length of query: 548
length of database: 18,247,518
effective HSP length: 107
effective length of query: 441
effective length of database: 14,195,856
effective search space: 6260372496
effective search space used: 6260372496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.