Guide to the Human Genome
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Name: PPARG Sequence: fasta or formatted (477aa) NCBI GI: 116284370
Description:

peroxisome proliferative activated receptor gamma isoform 1

Referenced in:

Adipose Tissue
Nuclear Receptors
Peroxisomes

Other entries for this name:
alt mRNA [477aa] peroxisome proliferative activated receptor gamma isoform 1
alt mRNA [477aa] peroxisome proliferative activated receptor gamma isoform 1
alt prot [505aa] peroxisome proliferative activated receptor gamma isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         26           1
 C cysteine            2.1         10           1
 D aspartate           6.7         32           2
 E glutamate           6.7         32           2
 F phenylalanine       5.5         26           2
 G glycine             4.0         19           1
 H histidine           2.9         14           1
 I isoleucine          6.9         33           2
 K lysine              8.2         39           2
 L leucine            10.5         50           2
 M methionine          3.4         16           2
 N asparagine          3.1         15           1
 P proline             4.8         23           2
 Q glutamine           4.8         23           1
 R arginine            4.0         19           2
 S serine              7.1         34           2
 T threonine           4.8         23           2
 V valine              5.0         24           2
 W tryptophan          0.2          1           1
 Y tyrosine            3.8         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisome proliferative activated receptor gamma i... 
PPARG                 1.000   peroxisome proliferative activated receptor gamma i...
PPARG                 1.000   peroxisome proliferative activated receptor gamma is...
PPARG                 1.000   peroxisome proliferative activated receptor gamma i...
PPARD                 0.526   peroxisome proliferative activated receptor, delta is...
PPARA                 0.519   peroxisome proliferative activated receptor, alpha [...
PPARA                 0.519   peroxisome proliferative activated receptor, alpha [H...
PPARD                 0.403   peroxisome proliferative activated receptor, delta i...
RARA                  0.161   retinoic acid receptor, alpha isoform 1 
RARA                  0.161   retinoic acid receptor, alpha isoform 2 
RARA                  0.161   retinoic acid receptor, alpha isoform 1 
RARB                  0.160   retinoic acid receptor, beta isoform 1 
RARG                  0.158   retinoic acid receptor, gamma isoform 2 
RARG                  0.158   retinoic acid receptor, gamma isoform 1 
NR1H3                 0.145   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.145   nuclear receptor subfamily 1, group H, member 3 iso...
RXRG                  0.139   retinoid X receptor, gamma isoform a 
RXRA                  0.134   retinoid X receptor, alpha 
NR1H2                 0.130   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR1H4                 0.128   nuclear receptor subfamily 1, group H, member 4 [Homo...
NR1I2                 0.122   nuclear receptor subfamily 1, group I, member 2 isof...
NR1D1                 0.118   nuclear receptor subfamily 1, group D, member 1 [Hom...
NR2E3                 0.117   photoreceptor-specific nuclear receptor isoform b [Ho...
NR2F2                 0.116   nuclear receptor subfamily 2, group F, member 2 isof...
NR1D2                 0.115   nuclear receptor subfamily 1, group D, member 2 iso...
NR1D2                 0.115   nuclear receptor subfamily 1, group D, member 2 iso...
NR2F1                 0.113   nuclear receptor subfamily 2, group F, member 1 [Homo...
NR4A1                 0.107   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.107   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A2                 0.106   nuclear receptor subfamily 4, group A, member 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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