Guide to the Human Genome
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Name: NR1D2 Sequence: fasta or formatted (504aa) NCBI GI: 224177493
Description:

nuclear receptor subfamily 1, group D, member 2 isoform 2

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [579aa] nuclear receptor subfamily 1, group D, member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         26           1
 C cysteine            3.2         16           1
 D aspartate           3.6         18           2
 E glutamate           6.9         35           2
 F phenylalanine       5.2         26           2
 G glycine             5.8         29           2
 H histidine           4.4         22           2
 I isoleucine          3.6         18           1
 K lysine              6.7         34           2
 L leucine             8.1         41           3
 M methionine          5.2         26           2
 N asparagine          6.5         33           2
 P proline             4.0         20           2
 Q glutamine           5.8         29           2
 R arginine            5.4         27           2
 S serine              9.5         48           3
 T threonine           3.6         18           1
 V valine              5.6         28           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 1, group D, member 2 iso... 
NR1D2                 1.000   nuclear receptor subfamily 1, group D, member 2 iso...
NR1D1                 0.470   nuclear receptor subfamily 1, group D, member 1 [Hom...
RORA                  0.118   RAR-related orphan receptor A isoform d 
RORA                  0.118   RAR-related orphan receptor A isoform c 
RORA                  0.118   RAR-related orphan receptor A isoform b 
RORA                  0.118   RAR-related orphan receptor A isoform a 
RORB                  0.113   RAR-related orphan receptor B 
PPARD                 0.109   peroxisome proliferative activated receptor, delta i...
PPARD                 0.109   peroxisome proliferative activated receptor, delta is...
PPARG                 0.107   peroxisome proliferative activated receptor gamma i...
PPARG                 0.107   peroxisome proliferative activated receptor gamma is...
PPARG                 0.107   peroxisome proliferative activated receptor gamma i...
PPARG                 0.107   peroxisome proliferative activated receptor gamma i...
RORC                  0.105   RAR-related orphan receptor C isoform b 
RORC                  0.105   RAR-related orphan receptor C isoform a 
NR1H3                 0.105   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.105   nuclear receptor subfamily 1, group H, member 3 iso...
RARB                  0.104   retinoic acid receptor, beta isoform 1 
RARB                  0.104   retinoic acid receptor, beta isoform 2 
PPARA                 0.104   peroxisome proliferative activated receptor, alpha [...
PPARA                 0.104   peroxisome proliferative activated receptor, alpha [H...
RARA                  0.102   retinoic acid receptor, alpha isoform 4 
RARA                  0.102   retinoic acid receptor, alpha isoform 1 
RARA                  0.102   retinoic acid receptor, alpha isoform 2 
RARA                  0.102   retinoic acid receptor, alpha isoform 1 
RARG                  0.101   retinoic acid receptor, gamma isoform 2 
RARG                  0.101   retinoic acid receptor, gamma isoform 1 
NR1H2                 0.098   nuclear receptor subfamily 1, group H, member 2 [Hom...
THRA                  0.086   thyroid hormone receptor, alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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