Guide to the Human Genome
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Name: RANBP3 Sequence: fasta or formatted (499aa) NCBI GI: 194097489
Description:

RAN binding protein 3 isoform RANBP3-b

Referenced in:

Ran and Rag

Other entries for this name:
alt prot [562aa] RAN binding protein 3 isoform RANBP3-a
alt prot [567aa] RAN binding protein 3 isoform RANBP3-d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         58           3
 C cysteine            1.2          6           1
 D aspartate           6.2         31           4
 E glutamate           9.4         47           3
 F phenylalanine       2.4         12           1
 G glycine             6.0         30           2
 H histidine           0.8          4           2
 I isoleucine          2.2         11           1
 K lysine              5.6         28           2
 L leucine             7.2         36           2
 M methionine          1.8          9           1
 N asparagine          4.0         20           1
 P proline             6.6         33           2
 Q glutamine           6.0         30           2
 R arginine            4.8         24           1
 S serine             11.8         59           3
 T threonine           5.6         28           2
 V valine              5.0         25           1
 W tryptophan          0.6          3           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAN binding protein 3 isoform RANBP3-b 
RANBP3                0.946   RAN binding protein 3 isoform RANBP3-d 
RANBP3                0.929   RAN binding protein 3 isoform RANBP3-a 
RANBP3L               0.234   RAN binding protein 3-like isoform 2 
RANBP3L               0.227   RAN binding protein 3-like isoform 1 
RGPD8                 0.026   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD5                 0.026   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD6                 0.026   RANBP2-like and GRIP domain containing 6 
MLLT1                 0.025   myeloid/lymphoid or mixed-lineage leukemia (trithora...
RANBP2                0.025   RAN binding protein 2 
NOLC1                 0.024   nucleolar and coiled-body phosphoprotein 1 
RGPD3                 0.023   RANBP2-like and GRIP domain containing 3 
RGPD1                 0.023   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.023   RANBP2-like and GRIP domain containing 2 
RGPD4                 0.022   RANBP2-like and GRIP domain containing 4 
SRRM2                 0.022   splicing coactivator subunit SRm300 
NEFH                  0.019   neurofilament, heavy polypeptide 200kDa 
IL16                  0.016   interleukin 16 isoform 2 
IL16                  0.016   interleukin 16 isoform 1 precursor 
NUP214                0.015   nucleoporin 214kDa 
TUBGCP6               0.015   tubulin, gamma complex associated protein 6 
PDS5B                 0.014   PDS5, regulator of cohesion maintenance, homolog B [H...
BASP1                 0.014   brain abundant, membrane attached signal protein 1 [...
RAD23A                0.013   UV excision repair protein RAD23 homolog A 
SCAF1                 0.013   SR-related CTD-associated factor 1 
MUC21                 0.013   mucin 21 
DSPP                  0.013   dentin sialophosphoprotein preproprotein 
YBX2                  0.013   Y box binding protein 2 
TCOF1                 0.013   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.013   Treacher Collins-Franceschetti syndrome 1 isoform d...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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