Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RANBP3L Sequence: fasta or formatted (465aa) NCBI GI: 239582743
Description:

RAN binding protein 3-like isoform 2

Referenced in:

Ran and Rag

Other entries for this name:
alt prot [490aa] RAN binding protein 3-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         29           3
 C cysteine            2.8         13           1
 D aspartate           4.1         19           2
 E glutamate           6.5         30           2
 F phenylalanine       4.5         21           1
 G glycine             3.9         18           1
 H histidine           2.4         11           2
 I isoleucine          5.6         26           1
 K lysine              8.0         37           1
 L leucine             8.2         38           2
 M methionine          1.1          5           1
 N asparagine          5.8         27           2
 P proline             3.4         16           1
 Q glutamine           6.9         32           2
 R arginine            5.6         26           2
 S serine             11.4         53           3
 T threonine           6.9         32           2
 V valine              4.9         23           1
 W tryptophan          0.6          3           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAN binding protein 3-like isoform 2 
RANBP3L               0.984   RAN binding protein 3-like isoform 1 
RANBP3                0.248   RAN binding protein 3 isoform RANBP3-b 
RANBP3                0.234   RAN binding protein 3 isoform RANBP3-d 
RANBP3                0.231   RAN binding protein 3 isoform RANBP3-a 
RGPD1                 0.032   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.032   RANBP2-like and GRIP domain containing 2 
RGPD4                 0.032   RANBP2-like and GRIP domain containing 4 
RGPD3                 0.026   RANBP2-like and GRIP domain containing 3 
RGPD8                 0.024   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD5                 0.024   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD6                 0.024   RANBP2-like and GRIP domain containing 6 
RANBP2                0.022   RAN binding protein 2 
RANBP1                0.010   RAN binding protein 1 
STAB2                 0.009   stabilin 2 precursor 
TNFRSF1A              0.008   tumor necrosis factor receptor 1 precursor 
NUP50                 0.008   nucleoporin 50kDa isoform a 
NUP50                 0.008   nucleoporin 50kDa isoform b 
ANKRD18B              0.006   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.006   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.006   PREDICTED: ankyrin repeat domain 18B 
BSDC1                 0.006   BSD domain containing 1 isoform d 
BSDC1                 0.006   BSD domain containing 1 isoform c 
BSDC1                 0.006   BSD domain containing 1 isoform a 
BSDC1                 0.006   BSD domain containing 1 isoform b 
KIF7                  0.006   kinesin family member 7 
PPARGC1A              0.004   peroxisome proliferator-activated receptor gamma, coa...
SPHKAP                0.004   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.004   sphingosine kinase type 1-interacting protein isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press