Guide to the Human Genome
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Name: PTPN4 Sequence: fasta or formatted (926aa) NCBI GI: 4506295
Description:

protein tyrosine phosphatase, non-receptor type 4

Referenced in:

Cytoskeleton
Protein Tyrosine Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         40           2
 C cysteine            2.1         19           1
 D aspartate           5.4         50           2
 E glutamate           6.2         57           2
 F phenylalanine       4.3         40           2
 G glycine             5.1         47           2
 H histidine           3.1         29           2
 I isoleucine          5.0         46           2
 K lysine              5.4         50           2
 L leucine             8.1         75           3
 M methionine          2.5         23           2
 N asparagine          5.5         51           2
 P proline             6.5         60           2
 Q glutamine           5.9         55           2
 R arginine            6.0         56           1
 S serine              7.7         71           3
 T threonine           5.5         51           2
 V valine              6.7         62           3
 W tryptophan          1.0          9           1
 Y tyrosine            3.8         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, non-receptor type 4 [Ho... 
PTPN3                 0.487   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.469   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.403   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.385   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.318   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.300   protein tyrosine phosphatase, non-receptor type 3 i...
EPB41L1               0.158   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.158   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L2               0.152   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.152   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.152   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L3               0.151   erythrocyte membrane protein band 4.1-like 3 
EPB41                 0.146   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.146   erythrocyte membrane protein band 4.1 (elliptocytosis...
FARP2                 0.137   FERM, RhoGEF and pleckstrin domain protein 2 
EPB41L4A              0.134   erythrocyte protein band 4.1-like 4 
EPB41L5               0.130   erythrocyte membrane protein band 4.1 like 5 
FARP1                 0.126   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
EPB41L4B              0.126   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.126   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41                 0.123   erythrocyte membrane protein band 4.1 (elliptocytosi...
FRMD7                 0.112   FERM domain containing 7 
FRMD5                 0.105   FERM domain containing 5 isoform 2 
FRMD3                 0.104   FERM domain containing 3 
PTPN14                0.095   protein tyrosine phosphatase, non-receptor type 14 [...
PTPN13                0.086   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.086   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.086   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.086   protein tyrosine phosphatase, non-receptor type 13 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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