Guide to the Human Genome
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Name: EPB41L1 Sequence: fasta or formatted (881aa) NCBI GI: 30061489
Description:

erythrocyte membrane protein band 4.1-like 1 isoform a

Referenced in:

ADP-Ribosylation Factors
Cytoskeleton

Other entries for this name:
alt prot [779aa] erythrocyte membrane protein band 4.1-like 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         63           4
 C cysteine            1.1         10           1
 D aspartate           6.8         60           2
 E glutamate          10.0         88           2
 F phenylalanine       3.3         29           2
 G glycine             5.7         50           2
 H histidine           2.5         22           2
 I isoleucine          4.7         41           3
 K lysine              7.2         63           2
 L leucine             7.2         63           2
 M methionine          1.6         14           1
 N asparagine          2.3         20           1
 P proline             6.6         58           3
 Q glutamine           4.0         35           2
 R arginine            6.5         57           2
 S serine              8.9         78           3
 T threonine           7.4         65           3
 V valine              4.4         39           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.4         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erythrocyte membrane protein band 4.1-like 1 isoform... 
EPB41L1               0.870   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L2               0.392   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L3               0.350   erythrocyte membrane protein band 4.1-like 3 
EPB41L2               0.320   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.320   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41                 0.291   erythrocyte membrane protein band 4.1 (elliptocytosis...
EPB41                 0.288   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.271   erythrocyte membrane protein band 4.1 (elliptocytosi...
PTPN4                 0.171   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41L5               0.148   erythrocyte membrane protein band 4.1 like 5 
EPB41L4B              0.138   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.138   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4A              0.136   erythrocyte protein band 4.1-like 4 
FARP1                 0.133   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
FRMD5                 0.132   FERM domain containing 5 isoform 2 
FRMD3                 0.132   FERM domain containing 3 
FARP2                 0.125   FERM, RhoGEF and pleckstrin domain protein 2 
FRMD7                 0.123   FERM domain containing 7 
PTPN3                 0.114   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.114   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.075   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.074   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN21                0.074   protein tyrosine phosphatase, non-receptor type 21 ...
EZR                   0.074   ezrin 
EZR                   0.074   ezrin 
MSN                   0.070   moesin 
RDX                   0.068   radixin 
NF2                   0.065   neurofibromin 2 isoform 2 
NF2                   0.065   neurofibromin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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