Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EPB41 Sequence: fasta or formatted (588aa) NCBI GI: 4758274
Description:

erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 3

Referenced in:

Centromere Proteins
Cytoskeleton
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [775aa] erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linke...
alt prot [641aa] erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linke...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         44           3
 C cysteine            1.2          7           1
 D aspartate           6.3         37           2
 E glutamate           8.5         50           2
 F phenylalanine       3.1         18           2
 G glycine             4.4         26           2
 H histidine           2.9         17           2
 I isoleucine          5.4         32           2
 K lysine              9.5         56           3
 L leucine             8.3         49           2
 M methionine          1.2          7           1
 N asparagine          2.4         14           1
 P proline             5.6         33           2
 Q glutamine           4.3         25           1
 R arginine            4.9         29           1
 S serine              7.0         41           2
 T threonine           6.6         39           1
 V valine              6.8         40           3
 W tryptophan          1.2          7           1
 Y tyrosine            2.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erythrocyte membrane protein band 4.1 (elliptocytosis... 
EPB41                 0.975   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.860   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41L2               0.517   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L2               0.443   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.443   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L1               0.438   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L3               0.433   erythrocyte membrane protein band 4.1-like 3 
EPB41L1               0.433   erythrocyte membrane protein band 4.1-like 1 isoform...
PTPN4                 0.237   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41L5               0.216   erythrocyte membrane protein band 4.1 like 5 
FARP1                 0.205   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
EPB41L4B              0.202   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.202   erythrocyte membrane protein band 4.1 like 4B isofo...
FRMD3                 0.201   FERM domain containing 3 
EPB41L4A              0.198   erythrocyte protein band 4.1-like 4 
FRMD5                 0.191   FERM domain containing 5 isoform 2 
FARP2                 0.189   FERM, RhoGEF and pleckstrin domain protein 2 
FRMD7                 0.181   FERM domain containing 7 
PTPN3                 0.171   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.171   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN21                0.114   protein tyrosine phosphatase, non-receptor type 21 ...
PTPN3                 0.114   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.114   protein tyrosine phosphatase, non-receptor type 3 i...
EZR                   0.110   ezrin 
EZR                   0.110   ezrin 
MSN                   0.099   moesin 
RDX                   0.097   radixin 
NF2                   0.093   neurofibromin 2 isoform 2 
NF2                   0.093   neurofibromin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press