Guide to the Human Genome
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Name: EPB41 Sequence: fasta or formatted (641aa) NCBI GI: 42716291
Description:

erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 2

Referenced in:

Centromere Proteins
Cytoskeleton
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [775aa] erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linke...
alt prot [588aa] erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linke...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         45           3
 C cysteine            1.1          7           1
 D aspartate           6.6         42           2
 E glutamate           8.3         53           2
 F phenylalanine       2.8         18           2
 G glycine             4.5         29           2
 H histidine           2.8         18           2
 I isoleucine          5.5         35           2
 K lysine              9.0         58           2
 L leucine             8.1         52           2
 M methionine          1.1          7           1
 N asparagine          2.5         16           1
 P proline             5.6         36           2
 Q glutamine           4.5         29           1
 R arginine            4.5         29           1
 S serine              7.2         46           2
 T threonine           8.3         53           4
 V valine              6.9         44           3
 W tryptophan          1.1          7           1
 Y tyrosine            2.7         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erythrocyte membrane protein band 4.1 (elliptocytosi... 
EPB41                 0.895   erythrocyte membrane protein band 4.1 (elliptocytosis...
EPB41                 0.850   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41L2               0.473   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L1               0.442   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L2               0.407   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.407   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L1               0.399   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L3               0.398   erythrocyte membrane protein band 4.1-like 3 
PTPN4                 0.218   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41L5               0.198   erythrocyte membrane protein band 4.1 like 5 
FARP1                 0.188   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
EPB41L4B              0.185   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.185   erythrocyte membrane protein band 4.1 like 4B isofo...
FRMD3                 0.184   FERM domain containing 3 
EPB41L4A              0.181   erythrocyte protein band 4.1-like 4 
FRMD5                 0.175   FERM domain containing 5 isoform 2 
FARP2                 0.173   FERM, RhoGEF and pleckstrin domain protein 2 
FRMD7                 0.166   FERM domain containing 7 
PTPN3                 0.158   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.157   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.106   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN21                0.104   protein tyrosine phosphatase, non-receptor type 21 ...
PTPN3                 0.104   protein tyrosine phosphatase, non-receptor type 3 i...
EZR                   0.101   ezrin 
EZR                   0.101   ezrin 
MSN                   0.095   moesin 
RDX                   0.089   radixin 
NF2                   0.080   neurofibromin 2 isoform 2 
NF2                   0.080   neurofibromin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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