Guide to the Human Genome
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Name: EPB41 Sequence: fasta or formatted (775aa) NCBI GI: 42716289
Description:

erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1

Referenced in:

Centromere Proteins
Cytoskeleton
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [641aa] erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linke...
alt prot [588aa] erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linke...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         54           3
 C cysteine            1.2          9           1
 D aspartate           5.9         46           2
 E glutamate          11.2         87           3
 F phenylalanine       2.7         21           2
 G glycine             4.8         37           2
 H histidine           2.3         18           2
 I isoleucine          5.0         39           2
 K lysine              9.3         72           2
 L leucine             7.5         58           2
 M methionine          0.9          7           1
 N asparagine          2.2         17           1
 P proline             5.9         46           2
 Q glutamine           5.3         41           2
 R arginine            4.1         32           1
 S serine              8.4         65           2
 T threonine           7.7         60           4
 V valine              5.7         44           3
 W tryptophan          0.9          7           1
 Y tyrosine            1.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erythrocyte membrane protein band 4.1 (elliptocytosi... 
EPB41                 0.704   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.654   erythrocyte membrane protein band 4.1 (elliptocytosis...
EPB41L2               0.359   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L2               0.321   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.321   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L1               0.311   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L3               0.304   erythrocyte membrane protein band 4.1-like 3 
EPB41L1               0.303   erythrocyte membrane protein band 4.1-like 1 isoform...
PTPN4                 0.153   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41L5               0.135   erythrocyte membrane protein band 4.1 like 5 
FARP1                 0.131   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
EPB41L4A              0.129   erythrocyte protein band 4.1-like 4 
FRMD3                 0.124   FERM domain containing 3 
EPB41L4B              0.122   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.122   erythrocyte membrane protein band 4.1 like 4B isofo...
FARP2                 0.122   FERM, RhoGEF and pleckstrin domain protein 2 
FRMD7                 0.113   FERM domain containing 7 
FRMD5                 0.113   FERM domain containing 5 isoform 2 
PTPN3                 0.112   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.111   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.086   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.086   protein tyrosine phosphatase, non-receptor type 3 i...
EZR                   0.074   ezrin 
EZR                   0.074   ezrin 
PTPN21                0.072   protein tyrosine phosphatase, non-receptor type 21 ...
MSN                   0.065   moesin 
RDX                   0.065   radixin 
NF2                   0.061   neurofibromin 2 isoform 2 
NF2                   0.061   neurofibromin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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