Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FRMD5 Sequence: fasta or formatted (570aa) NCBI GI: 94721308
Description:

FERM domain containing 5 isoform 2

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         35           2
 C cysteine            2.3         13           1
 D aspartate           4.0         23           2
 E glutamate           8.1         46           3
 F phenylalanine       5.8         33           2
 G glycine             4.6         26           2
 H histidine           3.3         19           2
 I isoleucine          4.6         26           2
 K lysine              6.3         36           2
 L leucine            11.2         64           5
 M methionine          1.4          8           1
 N asparagine          1.8         10           1
 P proline             4.9         28           2
 Q glutamine           3.5         20           1
 R arginine            7.0         40           3
 S serine              9.3         53           3
 T threonine           5.8         33           1
 V valine              6.0         34           2
 W tryptophan          0.7          4           1
 Y tyrosine            3.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM domain containing 5 isoform 2 
FRMD3                 0.499   FERM domain containing 3 
EPB41L2               0.207   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L5               0.207   erythrocyte membrane protein band 4.1 like 5 
EPB41L1               0.206   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.206   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L4A              0.204   erythrocyte protein band 4.1-like 4 
EPB41L2               0.200   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.200   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L3               0.199   erythrocyte membrane protein band 4.1-like 3 
EPB41                 0.197   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.197   erythrocyte membrane protein band 4.1 (elliptocytosis...
EPB41L4B              0.181   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.181   erythrocyte membrane protein band 4.1 like 4B isofo...
PTPN4                 0.177   protein tyrosine phosphatase, non-receptor type 4 [Ho...
FARP1                 0.171   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
FRMD7                 0.164   FERM domain containing 7 
EPB41                 0.153   erythrocyte membrane protein band 4.1 (elliptocytosi...
FARP2                 0.148   FERM, RhoGEF and pleckstrin domain protein 2 
PTPN3                 0.137   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.137   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN21                0.091   protein tyrosine phosphatase, non-receptor type 21 ...
PTPN14                0.089   protein tyrosine phosphatase, non-receptor type 14 [...
EZR                   0.084   ezrin 
EZR                   0.084   ezrin 
RDX                   0.084   radixin 
NF2                   0.084   neurofibromin 2 isoform 2 
NF2                   0.084   neurofibromin 2 isoform 2 
NF2                   0.084   neurofibromin 2 isoform 2 
NF2                   0.084   neurofibromin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press