Guide to the Human Genome
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Search of human proteins with 4506189

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
         (248 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506189 proteasome alpha 7 subunit [Homo sapiens]                  486   e-137
gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]       416   e-116
gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]       409   e-114
gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]       330   9e-91
gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]      162   3e-40
gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]        162   3e-40
gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]             160   1e-39
gi|23110942 proteasome alpha 5 subunit [Homo sapiens]                 152   3e-37
gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]        138   5e-33
gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]       138   5e-33
gi|23110944 proteasome alpha 6 subunit [Homo sapiens]                 132   2e-31
gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]        125   3e-29
gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]       119   3e-27
gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]      111   7e-25
gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]       82   4e-16
gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]        55   6e-08
gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]             54   1e-07
gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]             54   1e-07
gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]             54   1e-07
gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]          43   3e-04
gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens]         42   4e-04
gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo...    38   0.007
gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo ...    38   0.007
gi|239787084 zinc finger protein 611 isoform a [Homo sapiens]          32   0.51 
gi|239787082 zinc finger protein 611 isoform a [Homo sapiens]          32   0.51 
gi|239787080 zinc finger protein 611 isoform a [Homo sapiens]          32   0.51 
gi|16507237 heat shock 70kDa protein 5 [Homo sapiens]                  32   0.51 
gi|51988900 XPG-complementing protein [Homo sapiens]                   32   0.51 
gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]    32   0.51 
gi|4506193 proteasome beta 1 subunit [Homo sapiens]                    31   0.88 

>gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
          Length = 248

 Score =  486 bits (1250), Expect = e-137
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR 60
           MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR
Sbjct: 1   MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR 60

Query: 61  KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120
           KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
Sbjct: 61  KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120

Query: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180
           SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA
Sbjct: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180

Query: 181 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENE 240
           IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENE
Sbjct: 181 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENE 240

Query: 241 KKKQKKAS 248
           KKKQKKAS
Sbjct: 241 KKKQKKAS 248


>gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
          Length = 250

 Score =  416 bits (1068), Expect = e-116
 Identities = 208/245 (84%), Positives = 228/245 (93%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVAKLQDERTVRKI
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
           CALDD+VCMAFAGLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 65  CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
           GRRPFGISALIVGFD DG  RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI 
Sbjct: 125 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184

Query: 183 TDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKK 242
           +D   IKL IKALLEVVQSGGKNIELA++RR+Q LK+ + +E+E YV EIEKEKEE EKK
Sbjct: 185 SDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKK 244

Query: 243 KQKKA 247
           K KK+
Sbjct: 245 KSKKS 249


>gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]
          Length = 256

 Score =  409 bits (1051), Expect = e-114
 Identities = 208/251 (82%), Positives = 228/251 (90%), Gaps = 6/251 (2%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVAKLQDERTVRKI
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64

Query: 63  CALDDNVCMAFA------GLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQ 116
           CALDD+VCMAFA      GLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ
Sbjct: 65  CALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQ 124

Query: 117 RYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY 176
           +YTQSNGRRPFGISALIVGFD DG  RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNY
Sbjct: 125 KYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNY 184

Query: 177 TDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 236
           T++AI +D   IKL IKALLEVVQSGGKNIELA++RR+Q LK+ + +E+E YV EIEKEK
Sbjct: 185 TEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEK 244

Query: 237 EENEKKKQKKA 247
           EE EKKK KK+
Sbjct: 245 EEAEKKKSKKS 255


>gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]
          Length = 212

 Score =  330 bits (845), Expect = 9e-91
 Identities = 173/245 (70%), Positives = 191/245 (77%), Gaps = 38/245 (15%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG                         
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRG------------------------- 39

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
                        LTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 40  -------------LTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 86

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
           GRRPFGISALIVGFD DG  RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI 
Sbjct: 87  GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 146

Query: 183 TDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKK 242
           +D   IKL IKALLEVVQSGGKNIELA++RR+Q LK+ + +E+E YV EIEKEKEE EKK
Sbjct: 147 SDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKK 206

Query: 243 KQKKA 247
           K KK+
Sbjct: 207 KSKKS 211


>gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
          Length = 261

 Score =  162 bits (410), Expect = 3e-40
 Identities = 86/251 (34%), Positives = 149/251 (59%), Gaps = 8/251 (3%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RK 61
           YD   T+FSP+G L+QVEYA EA+    T +G+   D V+L  E++++ KL DE     K
Sbjct: 5   YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64

Query: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
           I  L++++  + AG+T+DA ++ N  R+  Q + L  ++P+  E +   +  +KQ YTQ 
Sbjct: 65  IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124

Query: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
            G+RPFG+S L +G+D     +LYQ+DPSG Y  WKA  IG  + +    L+++Y  E  
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183

Query: 182 ETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAEIEKE 235
            T    + L IK L   ++V +   + +E+A + R+     +++L  +E+E+ + + E+E
Sbjct: 184 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE 243

Query: 236 KEENEKKKQKK 246
           + + E++K++K
Sbjct: 244 EAKAEREKKEK 254


>gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
          Length = 261

 Score =  162 bits (410), Expect = 3e-40
 Identities = 86/251 (34%), Positives = 149/251 (59%), Gaps = 8/251 (3%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RK 61
           YD   T+FSP+G L+QVEYA EA+    T +G+   D V+L  E++++ KL DE     K
Sbjct: 5   YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64

Query: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
           I  L++++  + AG+T+DA ++ N  R+  Q + L  ++P+  E +   +  +KQ YTQ 
Sbjct: 65  IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124

Query: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
            G+RPFG+S L +G+D     +LYQ+DPSG Y  WKA  IG  + +    L+++Y  E  
Sbjct: 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 183

Query: 182 ETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAEIEKE 235
            T    + L IK L   ++V +   + +E+A + R+     +++L  +E+E+ + + E+E
Sbjct: 184 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE 243

Query: 236 KEENEKKKQKK 246
           + + E++K++K
Sbjct: 244 EAKAEREKKEK 254


>gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]
          Length = 234

 Score =  160 bits (405), Expect = 1e-39
 Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 12/235 (5%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           Y  ++T FSP G L Q+EYA  AV  G+ +VG++  + VVL  EKK  + L DER+V K+
Sbjct: 6   YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 65

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
             +  ++ + ++G+  D R++++RAR   Q + L  ++P+    + + +AS+ Q YTQS 
Sbjct: 66  EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 125

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT----- 177
           G RPFG+S LI G++ +G P L+Q+DPSG Y AWKA A+G+   + + FLEK Y      
Sbjct: 126 GVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLEL 184

Query: 178 DEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 232
           ++AI T  LT+K   +      Q    NIE+ +   +   + L P E++ Y+A I
Sbjct: 185 EDAIHTAILTLKESFEG-----QMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233


>gi|23110942 proteasome alpha 5 subunit [Homo sapiens]
          Length = 241

 Score =  152 bits (384), Expect = 3e-37
 Identities = 87/240 (36%), Positives = 143/240 (59%), Gaps = 16/240 (6%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YDR +  FSP+G LFQVEYA EA+K GSTA+G++  + V L VEK+  + L +  ++ KI
Sbjct: 8   YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 67

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
             +D ++  A +GL ADA+ +I++ARVE Q+H  T  + +TVE +T+ +++L  ++ + +
Sbjct: 68  VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127

Query: 123 G-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY- 176
                  RPFG++ L  G D  G P+L+  DPSGT+    A AIG  ++  +  L++ Y 
Sbjct: 128 ADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH 186

Query: 177 ----TDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 232
                 EAI++  + +K V++  L        NIELA ++  Q+  +   EE+E+ + +I
Sbjct: 187 KSMTLKEAIKSSLIILKQVMEEKLNAT-----NIELATVQPGQNFHMFTKEELEEVIKDI 241


>gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]
          Length = 263

 Score =  138 bits (347), Expect = 5e-33
 Identities = 79/246 (32%), Positives = 139/246 (56%), Gaps = 7/246 (2%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YD  +TV+SP G + Q+EYA EAVK+GS  VG++ +   VL   K++ ++L   +  +KI
Sbjct: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
             +D+++ ++ AGLTADAR++ N  R EC   R   + P+ V  +   I S  Q  TQ  
Sbjct: 64  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
           GRRP+G+  LI G+D D  P ++QT PS  Y   +A +IG  ++S R +LE++ ++    
Sbjct: 124 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182

Query: 183 TDDLTIKLVIKALLEVVQS----GGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEE 238
             +  +K  ++AL E + +      KN+ + ++ +D    I + +++  ++  +E+  + 
Sbjct: 183 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 242

Query: 239 NEKKKQ 244
             +  Q
Sbjct: 243 KAQPAQ 248


>gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]
          Length = 269

 Score =  138 bits (347), Expect = 5e-33
 Identities = 79/246 (32%), Positives = 139/246 (56%), Gaps = 7/246 (2%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YD  +TV+SP G + Q+EYA EAVK+GS  VG++ +   VL   K++ ++L   +  +KI
Sbjct: 12  YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 69

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
             +D+++ ++ AGLTADAR++ N  R EC   R   + P+ V  +   I S  Q  TQ  
Sbjct: 70  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 129

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
           GRRP+G+  LI G+D D  P ++QT PS  Y   +A +IG  ++S R +LE++ ++    
Sbjct: 130 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 188

Query: 183 TDDLTIKLVIKALLEVVQS----GGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEE 238
             +  +K  ++AL E + +      KN+ + ++ +D    I + +++  ++  +E+  + 
Sbjct: 189 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 248

Query: 239 NEKKKQ 244
             +  Q
Sbjct: 249 KAQPAQ 254


>gi|23110944 proteasome alpha 6 subunit [Homo sapiens]
          Length = 246

 Score =  132 bits (333), Expect = 2e-31
 Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 4/234 (1%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
           +DR IT+FSP+G L+QVEYA +A+ +G  T+V VRG+D  V+  +KK   KL D  TV  
Sbjct: 9   FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68

Query: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
           +  + +N+     G+TAD+R  + RAR E  + +      + V+ + + IA + Q YTQ+
Sbjct: 69  LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128

Query: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
              RP G   +++G D +  P++Y+ DP+G Y  +KA A G        FLEK    +  
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188

Query: 182 ETDDLTIKLVIKALLEVVQSGGKNIEL---AVMRRDQSLKILNPEEIEKYVAEI 232
            T + T++  I  L  V+    K  E+    V   +   +IL   EI+ ++  +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242


>gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 255

 Score =  125 bits (315), Expect = 3e-29
 Identities = 79/250 (31%), Positives = 137/250 (54%), Gaps = 18/250 (7%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YD + + FSPDG +FQVEYA +AV+  STA+G+R +D VV GVEK  ++KL +E + +++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
             +D +V MA AGL ADAR + + AR E  + R      + ++++   +A     YT  +
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
             RPFG S ++  +  +   +LY  DPSG  + +   AIG+  ++ +  +EK      ++
Sbjct: 128 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK------LQ 181

Query: 183 TDDLTIKLVIKALLEVV-----QSGGKNIELAVM-------RRDQSLKILNPEEIEKYVA 230
             ++T + ++K + +++     +   K  EL +         R + +     EE EKY  
Sbjct: 182 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 241

Query: 231 EIEKEKEENE 240
           E  KE++E++
Sbjct: 242 ESLKEEDESD 251


>gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]
          Length = 248

 Score =  119 bits (297), Expect = 3e-27
 Identities = 81/250 (32%), Positives = 135/250 (54%), Gaps = 25/250 (10%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YD + + FSPDG +FQVEYA +AV+  STA+G+R +D VV GVEK  ++KL +E + +++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
             +D +V MA AGL ADAR + + AR E  + R      + ++++   +A     YT  +
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127

Query: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
             RPFG S        DG  +LY  DPSG  + +   AIG+  ++ +  +EK      ++
Sbjct: 128 AVRPFGCSV------NDGA-QLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK------LQ 174

Query: 183 TDDLTIKLVIKALLEVV-----QSGGKNIELAVM-------RRDQSLKILNPEEIEKYVA 230
             ++T + ++K + +++     +   K  EL +         R + +     EE EKY  
Sbjct: 175 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 234

Query: 231 EIEKEKEENE 240
           E  KE++E++
Sbjct: 235 ESLKEEDESD 244


>gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]
          Length = 190

 Score =  111 bits (277), Expect = 7e-25
 Identities = 58/179 (32%), Positives = 105/179 (58%), Gaps = 7/179 (3%)

Query: 74  AGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALI 133
           AG+T+DA ++ N  R+  Q + L  ++P+  E +   +  +KQ YTQ  G+RPFG+S L 
Sbjct: 6   AGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLY 65

Query: 134 VGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIK 193
           +G+D     +LYQ+DPSG Y  WKA  IG  + +    L+++Y  E   T    + L IK
Sbjct: 66  IGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGEMTLKSALALAIK 124

Query: 194 AL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAEIEKEKEENEKKKQKK 246
            L   ++V +   + +E+A + R+     +++L  +E+E+ + + E+E+ + E++K++K
Sbjct: 125 VLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEK 183


>gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]
          Length = 130

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 2/111 (1%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
           YD  +TV+SP G + Q+EYA EAVK+GS  VG++ +   VL   K++ ++L   +  +KI
Sbjct: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63

Query: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIAS 113
             +D+++ ++ AGLTADAR++ N  R EC   R   + P+ V  +   I S
Sbjct: 64  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114


>gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]
          Length = 273

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 14/194 (7%)

Query: 25  AVKKGSTAVGVRGRDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIV 83
           A K G+T  G+  +D V+LG + ++    +  +++  KI  +   +    AG+ ADA + 
Sbjct: 35  ARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 94

Query: 84  INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPR 143
                 + + H L+      V  +TR +     RY     +   G S ++ G D  G P+
Sbjct: 95  TRMVASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLIVGGVDLTG-PQ 148

Query: 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLE----KNYTDEAIETDDLTIKLVIKALLEVV 199
           LY   P G+Y      A+G G  +    LE     N T EA +   L ++ V   +L  +
Sbjct: 149 LYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQ--GLLVEAVTAGILGDL 206

Query: 200 QSGGKNIELAVMRR 213
            SGG N++  V+ +
Sbjct: 207 GSGG-NVDACVITK 219


>gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
           +DR + +FSP   L+QV+YA +A+ +G  T+V VR +D  V+   K    KL D RT   
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150

Query: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
           +  +  N      G+TAD+R    RA+ +                     A+ K    + 
Sbjct: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKA--------------------ANCKYNIFEE 190

Query: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173
            G                  PR+Y+ D +G Y  +KA A G        FLE
Sbjct: 191 LG------------------PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224


>gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
           +DR + +FSP   L+QV+YA +A+ +G  T+V VR +D  V+   K    KL D RT   
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150

Query: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
           +  +  N      G+TAD+R    RA+ +                     A+ K    + 
Sbjct: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKA--------------------ANCKYNIFEE 190

Query: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173
            G                  PR+Y+ D +G Y  +KA A G        FLE
Sbjct: 191 LG------------------PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224


>gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
           +DR + +FSP   L+QV+YA +A+ +G  T+V VR +D  V+   K    KL D RT   
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150

Query: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
           +  +  N      G+TAD+R    RA+ +                     A+ K    + 
Sbjct: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKA--------------------ANCKYNIFEE 190

Query: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173
            G                  PR+Y+ D +G Y  +KA A G        FLE
Sbjct: 191 LG------------------PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224


>gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]
          Length = 263

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 39/194 (20%), Positives = 86/194 (44%), Gaps = 9/194 (4%)

Query: 29  GSTAVGVRGRDIVVLGVEKKSVAKLQ-DERTVRKICALDDNVCMAFAGLTADARIVINRA 87
           G+T +  + R  V++  + ++ A      +TV+K+  ++  +    AG  AD        
Sbjct: 59  GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118

Query: 88  RVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQT 147
             +C+ + L  ++ ++V   ++ +A++  +Y          +  +I G+D  G P LY  
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRG-PGLYYV 173

Query: 148 DPSGTYHAWKANAIGRGAKSVREFLEKNYTD--EAIETDDLTIKLVIKALLEVVQSGGKN 205
           D  G   +    ++G G+      +++ Y+   E  +  DL  + + +A      SGG  
Sbjct: 174 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGA- 232

Query: 206 IELAVMRRDQSLKI 219
           + L  +R D  +++
Sbjct: 233 VNLYHVREDGWIRV 246


>gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens]
          Length = 277

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 11/199 (5%)

Query: 27  KKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVIN 85
           K G+T  GV  +D +VLG + ++    +  ++   KI  +  N+    AG  AD  +   
Sbjct: 41  KTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQ 100

Query: 86  RARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLY 145
                 + H L+      V    R +  +  RY     +   G + ++ G D  G P LY
Sbjct: 101 LISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-----QGYIGAALVLGGVDVTG-PHLY 154

Query: 146 QTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD--EAIETDDLTIKLVIKALLEVVQSGG 203
              P G+        +G G+ +     E  +    E  E  +L  + +   +   + S G
Sbjct: 155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGS-G 213

Query: 204 KNIELAVMRRDQSLKILNP 222
            NI+L V+ +++ L  L P
Sbjct: 214 SNIDLCVISKNK-LDFLRP 231


>gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo
           sapiens]
          Length = 209

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 26  VKKGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVI 84
           V  G+T + V     VV+G + + S  +    R   K+  L + +  A +G  ADA+ V 
Sbjct: 7   VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 66

Query: 85  NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 144
           + A  + + H + +E+P  V      + ++  +Y     R       ++ G+D     ++
Sbjct: 67  DMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQV 121

Query: 145 YQT 147
           Y T
Sbjct: 122 YGT 124


>gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo
           sapiens]
          Length = 219

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 26  VKKGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVI 84
           V  G+T + V     VV+G + + S  +    R   K+  L + +  A +G  ADA+ V 
Sbjct: 17  VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76

Query: 85  NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 144
           + A  + + H + +E+P  V      + ++  +Y     R       ++ G+D     ++
Sbjct: 77  DMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQV 131

Query: 145 YQT 147
           Y T
Sbjct: 132 YGT 134


>gi|239787084 zinc finger protein 611 isoform a [Homo sapiens]
          Length = 705

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 169 REFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNP--EEIE 226
           RE + +NY +  +E  D++ K ++K +L   Q   + I    ++R +S  I +   +EIE
Sbjct: 50  REVMLENYRN--LEAVDISSKCMMKEVLSTGQGNTEVIHTGTLQRHESHHIGDFCFQEIE 107

Query: 227 KYVAEIEKEKEENEK 241
           K + +IE + +E+E+
Sbjct: 108 KEIHDIEFQCQEDER 122


>gi|239787082 zinc finger protein 611 isoform a [Homo sapiens]
          Length = 705

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 169 REFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNP--EEIE 226
           RE + +NY +  +E  D++ K ++K +L   Q   + I    ++R +S  I +   +EIE
Sbjct: 50  REVMLENYRN--LEAVDISSKCMMKEVLSTGQGNTEVIHTGTLQRHESHHIGDFCFQEIE 107

Query: 227 KYVAEIEKEKEENEK 241
           K + +IE + +E+E+
Sbjct: 108 KEIHDIEFQCQEDER 122


>gi|239787080 zinc finger protein 611 isoform a [Homo sapiens]
          Length = 705

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 169 REFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNP--EEIE 226
           RE + +NY +  +E  D++ K ++K +L   Q   + I    ++R +S  I +   +EIE
Sbjct: 50  REVMLENYRN--LEAVDISSKCMMKEVLSTGQGNTEVIHTGTLQRHESHHIGDFCFQEIE 107

Query: 227 KYVAEIEKEKEENEK 241
           K + +IE + +E+E+
Sbjct: 108 KEIHDIEFQCQEDER 122


>gi|16507237 heat shock 70kDa protein 5 [Homo sapiens]
          Length = 654

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 185 DLTIKLVIKALLEVV--QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKK 242
           ++T ++ +  +L V     G  N     +  DQ+   L PEEIE+ V + EK  EE++K 
Sbjct: 498 EVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNR--LTPEEIERMVNDAEKFAEEDKKL 555

Query: 243 KQK 245
           K++
Sbjct: 556 KER 558


>gi|51988900 XPG-complementing protein [Homo sapiens]
          Length = 1186

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 208 LAVMRRDQSLKILNP-EEIEKYVAEIEKEKEENEKKKQKKA 247
           L  +RR+  L +L P +E EK+ +E E EKE  E+  QK+A
Sbjct: 134 LTQVRRENDLYVLPPLQEEEKHSSEEEDEKEWQERMNQKQA 174


>gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]
          Length = 1356

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 162  GRGA-KSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSL-KI 219
            GRG  +S R  ++K+Y   A++ DD  ++ + +   E  +SG +++  A  +   SL + 
Sbjct: 918  GRGCNESFRAAIDKSYDKPAVDDDDEGMETLEEDTEESSRSGRESVSTASDQPSHSLERQ 977

Query: 220  LNPEEIEKYVAEIEKEKEENEKKKQK 245
            +N  + +    + +K+K   EKKK +
Sbjct: 978  MNGNQEKGDKTDRKKDKTGKEKKKDR 1003


>gi|4506193 proteasome beta 1 subunit [Homo sapiens]
          Length = 241

 Score = 31.2 bits (69), Expect = 0.88
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 5/149 (3%)

Query: 26  VKKGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVI 84
           V  G T + + G D  ++  + + S       R   K   L D   +  +G   D   + 
Sbjct: 34  VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 93

Query: 85  NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 144
                  + ++ +    +T    T  IA++      S    P+ +  +I G D +G   +
Sbjct: 94  KIIEARLKMYKHSNNKAMT----TGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149

Query: 145 YQTDPSGTYHAWKANAIGRGAKSVREFLE 173
           Y  DP G+Y      A G  +  ++  L+
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLD 178


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,501,884
Number of Sequences: 37866
Number of extensions: 352865
Number of successful extensions: 2769
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2647
Number of HSP's gapped (non-prelim): 121
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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