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Search of human proteins with 4506109
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506109 protamine 1 [Homo sapiens]
(51 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506109 protamine 1 [Homo sapiens] 115 1e-26
gi|68989267 protamine 2 [Homo sapiens] 46 7e-06
gi|41393554 LUC7-like isoform b [Homo sapiens] 37 0.003
gi|8922297 LUC7-like isoform a [Homo sapiens] 37 0.003
gi|116812577 LUC7-like 2 [Homo sapiens] 34 0.022
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 34 0.028
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 34 0.028
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 33 0.063
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 33 0.063
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 32 0.083
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 32 0.083
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 32 0.083
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 32 0.11
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 32 0.14
gi|239509017 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.14
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 32 0.14
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 32 0.14
gi|52426743 cisplatin resistance-associated overexpressed protei... 32 0.14
gi|19923485 cisplatin resistance-associated overexpressed protei... 32 0.14
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 31 0.18
gi|50962882 G patch domain containing 8 [Homo sapiens] 31 0.24
gi|4758826 neurturin preproprotein [Homo sapiens] 30 0.31
gi|24762236 PRP38 pre-mRNA processing factor 38 (yeast) domain c... 30 0.31
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 30 0.41
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 30 0.41
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 30 0.41
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 30 0.41
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 30 0.41
>gi|4506109 protamine 1 [Homo sapiens]
Length = 51
Score = 115 bits (287), Expect = 1e-26
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH
Sbjct: 1 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
>gi|68989267 protamine 2 [Homo sapiens]
Length = 102
Score = 45.8 bits (107), Expect = 7e-06
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 3 RYRCCRSQSRSRYYRQRQRS-RRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
R R C + R +R++ RS RRR+RRSC+ RRR R CR R R CRRH
Sbjct: 54 RRRHCSRRRLHRIHRRQHRSCRRRKRRSCRHRRRHRRGCRTRKR-TCRRH 102
>gi|41393554 LUC7-like isoform b [Homo sapiens]
Length = 371
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 8 RSQSRSRYYRQRQRSR-RRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
RS SR+R R+R RSR RRRRRS T R + R R R R RRH
Sbjct: 259 RSGSRTRD-RRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRH 302
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
R +SRSR R+R+RSR R + R R R+R R R H
Sbjct: 267 RRRSRSRD-RRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSH 309
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 8 RSQSRSRYYRQ-RQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
RS+SR R R+ R SR RR+ S R R R R R R H
Sbjct: 269 RSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGH 313
>gi|8922297 LUC7-like isoform a [Homo sapiens]
Length = 325
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 8 RSQSRSRYYRQRQRSR-RRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
RS SR+R R+R RSR RRRRRS T R + R R R R RRH
Sbjct: 259 RSGSRTRD-RRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRH 302
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
R +SRSR R+R+RSR R + R R R+R R R H
Sbjct: 267 RRRSRSRD-RRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSH 309
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 8 RSQSRSRYYRQ-RQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
RS+SR R R+ R SR RR+ S R R R R R R H
Sbjct: 269 RSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGH 313
>gi|116812577 LUC7-like 2 [Homo sapiens]
Length = 392
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
M+R R R++S+SR R R RSR R ++ +R+ R R R R +R
Sbjct: 284 MSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKR 333
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 10 QSRSRYYRQRQ-----RSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
+SRSR +R+ + R R+RR RS +R R R R R H
Sbjct: 270 RSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSH 316
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 33.9 bits (76), Expect = 0.028
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
RS SRSR +R RSR R R+ ++R R + R R R R
Sbjct: 64 RSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRER 103
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
S+SRSR R R RSR R++ ++R R R R R + R
Sbjct: 67 SRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSR 107
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
RS+SR R R R RSR R R +TR R+ R R R +
Sbjct: 107 RSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKK 146
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
+S+SRSR ++R RSR R R + R R+ R R R R +R
Sbjct: 105 KSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKR 147
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 3 RYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPR 43
R R RS+SRSR R R R+R R R ++R R R +PR
Sbjct: 113 RKRRIRSRSRSRS-RHRHRTRSRSRTRSRSRDRKKRIEKPR 152
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 8 RSQSRSRYYRQRQR----S--RRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
RS+SR R +R R R S R R R+ ++R R + R R R R RR
Sbjct: 68 RSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRR 116
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 8 RSQSRSRYYRQ-RQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
+S+SRSR ++ R RSR R+RR R R+ R R+R R R
Sbjct: 95 KSRSRSRERKKSRSRSRERKRR---IRSRSRSRSRHRHRTRSR 134
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 8 RSQSRSRYY-RQRQRSRRRRRRSCQTRRRAMRC---CRPRYRPRCR 49
RS+SR R R R R R++ R + R+R +R R R+R R R
Sbjct: 87 RSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTR 132
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 33.9 bits (76), Expect = 0.028
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
RS SRSR +R RSR R R+ ++R R + R R R R
Sbjct: 123 RSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRER 162
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
S+SRSR R R RSR R++ ++R R R R R + R
Sbjct: 126 SRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSR 166
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
RS+SR R R R RSR R R +TR R+ R R R +
Sbjct: 166 RSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKK 205
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
+S+SRSR ++R RSR R R + R R+ R R R R +R
Sbjct: 164 KSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKR 206
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 3 RYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPR 43
R R RS+SRSR R R R+R R R ++R R R +PR
Sbjct: 172 RKRRIRSRSRSRS-RHRHRTRSRSRTRSRSRDRKKRIEKPR 211
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 8 RSQSRSRYYRQRQR----S--RRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
RS+SR R +R R R S R R R+ ++R R + R R R R RR
Sbjct: 127 RSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRR 175
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 RSQSRSRYYRQRQRSR-RRRRRSCQTRRRAMRCCRPRYRPRCR 49
R +SRSR R+R++SR R R R + R R+ R R+R R R
Sbjct: 152 RKKSRSR-SRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSR 193
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 8 RSQSRSRYY-RQRQRSRRRRRRSCQTRRRAMRC---CRPRYRPRCR 49
RS+SR R R R R R++ R + R+R +R R R+R R R
Sbjct: 146 RSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTR 191
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 YRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
+R S SRSR R R+RSR R RRS ++R R++ R R R R +
Sbjct: 187 HRRSYSGSRSRS-RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSK 231
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 32.7 bits (73), Expect = 0.063
Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 12 RSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
RSR Y +R RS RRR RS R R C R R R R R
Sbjct: 117 RSRSYGRRSRSPRRRHRS---RSRGPSCSRSRSRSRYR 151
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 6 CCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRC--CRPRYR 45
C RS+SRSR YR + SR RS +R R R R RYR
Sbjct: 141 CSRSRSRSR-YRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR 181
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 32.3 bits (72), Expect = 0.083
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 2 ARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
+R R R+ S SR+ R R RSRRR ++RRR+ R R R R
Sbjct: 253 SRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRER 300
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
+ + + R+ R R RSRRRR S RR+ R R + R
Sbjct: 241 KKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSR 282
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 2 ARYRCCRSQSRSRYY-----RQRQRSRRRRRRSCQTRRRAMR 38
+R+R RS+SR R + R+R +S RRRR + R R R
Sbjct: 264 SRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSR 305
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 5 RCCRSQSRSRYYR-------QRQRSRRRRRRSCQTRRRAMRCCRPRYR 45
R RS+SRSR R +R RSR RRR ++R R R PR R
Sbjct: 247 RHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSR-RRSKSPRRR 293
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPR 43
RS S+SR R+ + RRRR S + RR+ + R
Sbjct: 276 RSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTR 311
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 32.3 bits (72), Expect = 0.083
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 2 ARYRCCRSQSRSRYYRQRQRSRRRRRRS-CQTRRRAMRCCRPRYRPRCRRH 51
AR R +S+S R R RSRRRRR S +++ R R R R +H
Sbjct: 1847 ARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKH 1897
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 10 QSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
+ RS +R + R R+R+R S + R+ +R R R H
Sbjct: 1891 RKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSH 1932
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAM----RCCRPRYRPRCR 49
RSQ+RSR R R+R R R RS RR++ R P++R + R
Sbjct: 1858 RSQTRSRS-RSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSR 1902
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 32.3 bits (72), Expect = 0.083
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 2 ARYRCCRSQSRSRYYRQRQRSRRRRRRS-CQTRRRAMRCCRPRYRPRCRRH 51
AR R +S+S R R RSRRRRR S +++ R R R R +H
Sbjct: 1847 ARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKH 1897
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 10 QSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
+ RS +R + R R+R+R S + R+ +R R R H
Sbjct: 1891 RKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSH 1932
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAM----RCCRPRYRPRCR 49
RSQ+RSR R R+R R R RS RR++ R P++R + R
Sbjct: 1858 RSQTRSRS-RSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSR 1902
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 5 RCCRSQSR------SRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
R RS SR SR R + RSR RRR + RR + R R R R RR+
Sbjct: 41 RSSRSHSRVSSRFSSRSRRSKSRSRSRRRHQRKYRRYSRSYSRSRSRSRSRRY 93
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 4 YRCCRSQSRSRYYRQRQR--SRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
Y RS+SRSR YR+R+ +RR R + R R+ R R R C R
Sbjct: 81 YSRSRSRSRSRRYRERRYGFTRRYYRSPSRYRSRSRSRSRSRGRSYCGR 129
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 2 ARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYR 45
+R R +S+SRSR R+ QR RR RS R R R R R
Sbjct: 55 SRSRRSKSRSRSR--RRHQRKYRRYSRSYSRSRSRSRSRRYRER 96
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 5 RCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
R RS+SRSR R+ QR + RR S R R RYR R
Sbjct: 56 RSRRSKSRSRSRRRHQR--KYRRYSRSYSRSRSRSRSRRYRER 96
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRC-CRPRYRPRC 48
+ R R S+ R R R R+R RRR R ++R R++R R R R C
Sbjct: 138 LERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLC 186
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 6 CCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRP 42
C RS+SRSR RSRRR R RRR+ RP
Sbjct: 38 CSRSRSRSR-----SRSRRRSRSLRWLRRRSRSRSRP 69
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRC-CRPRYRPRC 48
+ R R S+ R R R R+R RRR R ++R R++R R R R C
Sbjct: 138 LERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLC 186
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 6 CCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRP 42
C RS+SRSR RSRRR R RRR+ RP
Sbjct: 38 CSRSRSRSR-----SRSRRRSRSLRWLRRRSRSRSRP 69
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRC-CRPRYRPRC 48
+ R R S+ R R R R+R RRR R ++R R++R R R R C
Sbjct: 138 LERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLC 186
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 6 CCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRP 42
C RS+SRSR RSRRR R RRR+ RP
Sbjct: 38 CSRSRSRSR-----SRSRRRSRSLRWLRRRSRSRSRP 69
>gi|239509017 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 90
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
S S S R+R+R RRRRRR + RRR R + + + + RR
Sbjct: 38 SSSSSSRRRRRRRRRRRRRRRRRRRRRRRREEKKKQKKKKRR 79
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMR 38
S S S R+R+R RRRRRR + RRR R
Sbjct: 36 SSSSSSSSRRRRRRRRRRRRRRRRRRRRRR 65
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMR 38
S S S R+R+R RRRRRR + RRR R
Sbjct: 37 SSSSSSSRRRRRRRRRRRRRRRRRRRRRRR 66
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMR 38
S S S +R+R RRRRRR + RRR R
Sbjct: 35 SSSSSSSSSRRRRRRRRRRRRRRRRRRRRR 64
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/43 (44%), Positives = 20/43 (46%)
Query: 5 RCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
R RS S S S RRRRR + RRR R R R R R
Sbjct: 25 RRSRSSSSSSSSSSSSSSSRRRRRRRRRRRRRRRRRRRRRRRR 67
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 3 RYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPR 43
R R S S S R RRRRRR + RRR R R R
Sbjct: 26 RSRSSSSSSSSSSSSSSSRRRRRRRRRRRRRRRRRRRRRRR 66
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRR 35
R + R R R+R+R RRRRRR + +++
Sbjct: 45 RRRRRRRRRRRRRRRRRRRRRRREEKKK 72
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMR 38
R + R R R+R+R RRRRRR + ++ +
Sbjct: 44 RRRRRRRRRRRRRRRRRRRRRRRREEKKKQK 74
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMR 38
R + R R R+R+R RRRRR + +++ R
Sbjct: 48 RRRRRRRRRRRRRRRRRRRREEKKKQKKKKR 78
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMR 38
RS+SRSRY R + RSR R R ++ R+ R
Sbjct: 137 RSRSRSRYSRSKSRSRTRSRSRSTSKSRSAR 167
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 12 RSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
RSR R+R+RSR R R ++R R+ R R + R R R
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRS-RYSRSKSRSRTR 154
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 10 QSRSRYYRQRQRSRRRRRRSCQTRRRAMRC-CRPRYRPRCR 49
+SRS R+R RSR R R ++R R R R R R R R
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSR 158
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 16 YRQRQRSRRRRRRS-CQTRRRAMRCCRPRY 44
Y +R RS RRRRRS ++R R+ R RY
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRY 144
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 2 ARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
+RY +S+SR+R R R S+ R R +++ ++ R R R R R
Sbjct: 142 SRYSRSKSRSRTR-SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSR 188
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 5 RCCRSQSRSRYYRQRQRSRRRRR------RSCQTRRRAMRCCRP 42
R RS+SRSR R+R RS RRR RS + RRR R P
Sbjct: 572 RRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASP 615
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 9 SQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
S S R R R RSR RRRS T RR R R R + RR
Sbjct: 567 SSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRR 608
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 RCCRSQSRSRYY-RQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
RC RS+ R R+R+RSR R RR ++ R+ R R R R R R
Sbjct: 307 RCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRR 352
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
R + R+R +R+RSR R R S +T R RC R R R R
Sbjct: 279 REKERARDRERRKRSRSRSRHSSRTSDR--RCSRSRDHKRSR 318
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 3 RYRCCRSQSRSRYY-----RQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
R R RS+SRSR+ R+ RSR +R + RRR+ R R R R R H
Sbjct: 287 RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS----RSRDRRRSRSH 336
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
R + R R +R+R RRR + R R R R R R R
Sbjct: 257 REKEREREREERERKRRREEEEREKERARDRERRKRSRSRSR 298
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 RCCRSQSRSRYY-RQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
RC RS+ R R+R+RSR R RR ++ R+ R R R R R R
Sbjct: 307 RCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRR 352
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
R + R+R +R+RSR R R S +T R RC R R R R
Sbjct: 279 REKERARDRERRKRSRSRSRHSSRTSDR--RCSRSRDHKRSR 318
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 3 RYRCCRSQSRSRYY-----RQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
R R RS+SRSR+ R+ RSR +R + RRR+ R R R R R H
Sbjct: 287 RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS----RSRDRRRSRSH 336
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCR 49
R + R R +R+R RRR + R R R R R R R
Sbjct: 257 REKEREREREERERKRRREEEEREKERARDRERRKRSRSRSR 298
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 2 ARYRCCRSQSRS-------RYYRQRQRSRRRRRRSCQTRR 34
+R R RS+SRS RY R R RSR RR RS RR
Sbjct: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRR 162
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 6 CCRSQSRSRYY-RQRQRSRRRRRRSCQTRRRAMRCCR 41
C +S+SRSR + R+R RSR R R S +R R+ R R
Sbjct: 939 CSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSR 975
>gi|4758826 neurturin preproprotein [Homo sapiens]
Length = 197
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 3 RYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRP 42
RY ++ +R Y R R+RRR + R RA CCRP
Sbjct: 128 RYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRP 167
>gi|24762236 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing A [Homo sapiens]
Length = 312
Score = 30.4 bits (67), Expect = 0.31
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 3 RYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRP---RYRPRCRRH 51
RYR RS+SRS R+RSR +RRS RR R P R R R RRH
Sbjct: 230 RYR--RSRSRS----PRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRH 275
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
RS+ RSR R+R+R RRR R ++R R R R R R R+
Sbjct: 2171 RSRERSRN-RERERDRRRDRDRSRSRERDRDKARDRERGRDRK 2212
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 8 RSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPR 47
RS+ RSR R RSR R RRS ++R ++ R R R R
Sbjct: 429 RSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRR 468
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 2 ARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAM-RCCRPRYRPRCRR 50
+R+R +S R+ R+R SR R R ++R R+ R R R R R RR
Sbjct: 400 SRHRGKKSHKRTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRR 449
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 4 YRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
YR RS+S+SR R R R R R S + R + R R R R R RR
Sbjct: 94 YRVQRSRSKSRTRRSRSRP-RLRSHSRSSERSSHRRTRSRSRDRERR 139
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 4 YRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH 51
Y R +SRSR R R +S R +R ++R R R R RPR R H
Sbjct: 76 YGSRRKRSRSR-SRGRGKSYRVQRSRSKSRTR-----RSRSRPRLRSH 117
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 1 MARYRCCRSQSRSRYYRQRQ-----RSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
M+ R RS+S SR ++R+ RSRR R R ++R R R PR R + RR
Sbjct: 428 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERR 482
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 1 MARYRCCRSQSRSRYYRQRQ-----RSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
M+ R RS+S SR ++R+ RSRR R R ++R R R PR R + RR
Sbjct: 413 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERR 467
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.344 0.137 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,026,820
Number of Sequences: 37866
Number of extensions: 65344
Number of successful extensions: 1986
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 541
length of query: 51
length of database: 18,247,518
effective HSP length: 25
effective length of query: 26
effective length of database: 17,300,868
effective search space: 449822568
effective search space used: 449822568
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.