Search of human proteins with 4505893

Search of human proteins with 4505893

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505893 proteolipid protein 2 (colonic epithelium-enriched)
[Homo sapiens]
         (152 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505893 proteolipid protein 2 (colonic epithelium-enriched) [...   310   2e-85
gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ...    80   7e-16
gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]        65   3e-11
gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]         65   3e-11
gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]         65   3e-11
gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]         65   3e-11
gi|19923929 CKLF-like MARVEL transmembrane domain containing 7 i...    57   6e-09
gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo ...    54   7e-08
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ...    54   7e-08
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ...    54   7e-08
gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom...    53   1e-07
gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ...    49   2e-06
gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom...    47   5e-06
gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ...    44   7e-05
gi|32130536 CKLF-like MARVEL transmembrane domain containing 8 [...    41   3e-04
gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]         41   3e-04
gi|7705755 plasmolipin [Homo sapiens]                                  35   0.025
gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [H...    33   0.072
gi|45594310 olfactory receptor, family 5, subfamily V, member 1 ...    28   2.3  
gi|118026921 asparagine-linked glycosylation 9 protein isoform a...    28   3.0  
gi|118026935 asparagine-linked glycosylation 9 protein isoform d...    28   3.0  
gi|118026937 asparagine-linked glycosylation 9 protein isoform c...    28   3.0  
gi|118026933 asparagine-linked glycosylation 9 protein isoform b...    28   3.0  
gi|14589946 protocadherin 11 Y-linked isoform c [Homo sapiens]         27   5.1  
gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens]         27   5.1  
gi|14589942 protocadherin 11 Y-linked isoform a [Homo sapiens]         27   5.1  
gi|7657443 protocadherin 11 X-linked isoform a precursor [Homo s...    27   5.1  
gi|14589922 protocadherin 11 X-linked isoform d [Homo sapiens]         27   5.1  
gi|14589920 protocadherin 11 X-linked isoform c [Homo sapiens]         27   5.1  
gi|14589918 protocadherin 11 X-linked isoform b precursor [Homo ...    27   5.1  

>gi|4505893 proteolipid protein 2 (colonic epithelium-enriched)
           [Homo sapiens]
          Length = 152

 Score =  310 bits (795), Expect = 2e-85
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA 60
           MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA
Sbjct: 1   MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA 60

Query: 61  AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI 120
           AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI
Sbjct: 61  AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI 120

Query: 121 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV 152
           ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV
Sbjct: 121 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV 152


>gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo
           sapiens]
          Length = 156

 Score = 80.1 bits (196), Expect = 7e-16
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 19  FSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIPFI 78
           F  + KGILL  E+ L L+I ICF+AS   Y + +++E  +   F  +Y    + +   I
Sbjct: 29  FLTSHKGILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFDRI 88

Query: 79  NWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLIATCLFGYDAY 130
           NWP  DF R + A I++L+ S   +  R + + I A V G+I   +F YDA+
Sbjct: 89  NWPCLDFLRCVSAIIIFLVVSFAAVTSR-DGAAIAAFVFGIILVSIFAYDAF 139


>gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 24  KGILLFAEIILCLVILICFSASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPW 82
           KG LL AE  L  +  IC+ AS+   + +  ++E +LA  F       L+ K   + WP 
Sbjct: 41  KGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPM 100

Query: 83  SDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLIATCLFGYDAYVTF 133
            DF R + AA++Y   SI  + +  + +   AGV G  AT +F  D Y+ F
Sbjct: 101 MDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVFATDFYLIF 151


>gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 24  KGILLFAEIILCLVILICFSASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPW 82
           KG LL AE  L  +  IC+ AS+   + +  ++E +LA  F       L+ K   + WP 
Sbjct: 41  KGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPM 100

Query: 83  SDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLIATCLFGYDAYVTF 133
            DF R + AA++Y   SI  + +  + +   AGV G  AT +F  D Y+ F
Sbjct: 101 MDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVFATDFYLIF 151


>gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 24  KGILLFAEIILCLVILICFSASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPW 82
           KG LL AE  L  +  IC+ AS+   + +  ++E +LA  F       L+ K   + WP 
Sbjct: 41  KGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPM 100

Query: 83  SDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLIATCLFGYDAYVTF 133
            DF R + AA++Y   SI  + +  + +   AGV G  AT +F  D Y+ F
Sbjct: 101 MDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVFATDFYLIF 151


>gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 24  KGILLFAEIILCLVILICFSASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPW 82
           KG LL AE  L  +  IC+ AS+   + +  ++E +LA  F       L+ K   + WP 
Sbjct: 41  KGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPM 100

Query: 83  SDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLIATCLFGYDAYVTF 133
            DF R + AA++Y   SI  + +  + +   AGV G  AT +F  D Y+ F
Sbjct: 101 MDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVFATDFYLIF 151


>gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
           isoform a [Homo sapiens]
          Length = 175

 Score = 57.0 bits (136), Expect = 6e-09
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 18  NFSRTRKGILLFAEIILCLVILICFSAST-PGYSSLSVIE------MILAAIFFVVYMCD 70
           ++ RT   +L  A+++  L+  IC  +S    YS+ S  E      +I+   F++V++  
Sbjct: 39  SYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFR 98

Query: 71  LHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAG-VLGLIATCLFGYDA 129
            +  +  I+WP S+    LI  +L LI SIV   +  N S +VAG + G +AT L     
Sbjct: 99  FYRVLTCISWPLSELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASI 158

Query: 130 YVTFPV 135
           ++++ +
Sbjct: 159 WLSYKI 164


>gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo
           sapiens]
          Length = 125

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query: 19  FSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIPFI 78
           F  + KGILL  E+ L L+I ICF+AS   Y + +++E  +   F  +Y    + +   I
Sbjct: 29  FLTSHKGILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFDRI 88

Query: 79  NWPWSDFFRTLIAAILY 95
           NWP   F   L++   Y
Sbjct: 89  NWPCLVFGIILVSIFAY 105


>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
           sapiens]
          Length = 208

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 13/125 (10%)

Query: 18  NFSRTRKGILLFAEIILCLVILICFS---ASTPG-----YSSLSVIEMILAAIFFVVYMC 69
           ++ R   G L  A++IL L+  IC     A +P      +  +S    ++  +  +++  
Sbjct: 48  DYLRGALGRLKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSL 107

Query: 70  DLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNH---SKIVAGVLGLIATCLFG 126
           +LH +IP INW  +D   T ++A L+ I SIV+     NH   ++I A + G +AT  + 
Sbjct: 108 NLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAAL--NHRAGAEIAAVIFGFLATAAYA 165

Query: 127 YDAYV 131
            + ++
Sbjct: 166 VNTFL 170


>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
           sapiens]
          Length = 234

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 13/125 (10%)

Query: 18  NFSRTRKGILLFAEIILCLVILICFS---ASTPG-----YSSLSVIEMILAAIFFVVYMC 69
           ++ R   G L  A++IL L+  IC     A +P      +  +S    ++  +  +++  
Sbjct: 48  DYLRGALGRLKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSL 107

Query: 70  DLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNH---SKIVAGVLGLIATCLFG 126
           +LH +IP INW  +D   T ++A L+ I SIV+     NH   ++I A + G +AT  + 
Sbjct: 108 NLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAAL--NHRAGAEIAAVIFGFLATAAYA 165

Query: 127 YDAYV 131
            + ++
Sbjct: 166 VNTFL 170


>gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo
           sapiens]
          Length = 286

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 19  FSRTRKGILLFAEIILCLVILICF--SASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIP 76
           FS +  G+L    + L L  L CF  + +   + +++ +E+ +   F ++Y+  LH  + 
Sbjct: 131 FSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLT 190

Query: 77  FINWPWSDFFRTLIAAILYLITSIVVLVE-RGNHSKIVAGVLGLIATCLFGYDAYV 131
           +++WP  D   ++I A+   + +I+ + E +  H   V G L L A  +   DA+V
Sbjct: 191 YLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFV 246


>gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo
           sapiens]
          Length = 169

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 30  AEIILCLVILICF--SASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFR 87
           A + L L  L CF  + +   + +++ +E+ +   F ++Y+  LH  + +++WP  D   
Sbjct: 25  AALSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTN 84

Query: 88  TLIAAILYLITSIVVLVE-RGNHSKIVAGVLGLIATCLFGYDAYV 131
           ++I A+   + +I+ + E +  H   V G L L A  +   DA+V
Sbjct: 85  SIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFV 129


>gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo
           sapiens]
          Length = 231

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 19  FSRTRKGILLFAEIILCLVILICF--SASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIP 76
           FS +  G+L    + L L  L CF  + +   + +++ +E+ +   F ++Y+  LH  + 
Sbjct: 131 FSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLT 190

Query: 77  FINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAG 115
           +++WP  D   ++I A+   + +I+ + E+     +  G
Sbjct: 191 YLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVG 229


>gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo
           sapiens]
          Length = 114

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 30  AEIILCLVILICF--SASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFR 87
           A + L L  L CF  + +   + +++ +E+ +   F ++Y+  LH  + +++WP  D   
Sbjct: 25  AALSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTN 84

Query: 88  TLIAAILYLITSIVVLVERGNHSKIVAG 115
           ++I A+   + +I+ + E+     +  G
Sbjct: 85  SIITAVFLSVVAILAMQEKKRRHLLYVG 112


>gi|32130536 CKLF-like MARVEL transmembrane domain containing 8
           [Homo sapiens]
          Length = 173

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 19  FSRTRKGILLFAEIILCLVILICFSAS----TPGYS---SLSVIEMILAAIFFVVYMCDL 71
           F RT  G L+ AEI+L L++    + +     P +     ++V   +L   F ++Y+   
Sbjct: 36  FLRTLPGFLIVAEIVLGLLVWTLIAGTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMT 95

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIV----VLVERGNH---SKIVAGVLGLIATCL 124
           +T+IP + W          A +LYL  ++V    V  ER +H   S   +     + T  
Sbjct: 96  YTRIPQVPWTTVGLCFNGSAFVLYLSAAVVDASSVSPERDSHNFNSWAASSFFAFLVTIC 155

Query: 125 FGYDAYVTF 133
           +  + Y +F
Sbjct: 156 YAGNTYFSF 164


>gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]
          Length = 248

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 35  CLVILICFSASTPGYSSLSVI---EMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIA 91
           CL+  +   +S   +  L +I   E+   + F ++Y   +H  IPFI WP SD F  LIA
Sbjct: 97  CLIAAMILLSSLTVHPILRLIITMEISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIA 156

Query: 92  AILYLITSIVVLVERGNHSKI----------VAGVLGLIATCL 124
              +L+ ++V  V       +           AGV   I  CL
Sbjct: 157 C-AFLVGAVVFAVRSRRSMNLHYLLAVILIGAAGVFAFIDVCL 198


>gi|7705755 plasmolipin [Homo sapiens]
          Length = 182

 Score = 35.0 bits (79), Expect = 0.025
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 19  FSRTRKGILLFAEIILCLVILICFSAST----PGYSSLSVIEMIL---AAIFFVVYMCDL 71
           F R+R G L+  +++L L++    + +     P Y  +  + + L     + F +Y+  L
Sbjct: 32  FVRSRLGALMLLQLVLGLLVWALIADTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQL 91

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSI 100
           H K+  + WP       + A +LY+   I
Sbjct: 92  HMKLYMVPWPLVLMIFNISATVLYITAFI 120


>gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [Homo
           sapiens]
          Length = 183

 Score = 33.5 bits (75), Expect = 0.072
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 21  RTRKGILLFAEIILCLVILICFSASTPG----YSSLSVIEMILAAIFFVVYMCDLHTKIP 76
           R  KG+ L   ++  +   +    +  G    +  +S    +L+ +  +VY    + ++ 
Sbjct: 39  RVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVD 98

Query: 77  FINWPWSDFFRTLIAAILYLITSIV-VLVERGNHSKIVAGVLGLIATCLFGYD 128
                 SDF+ TL    ++L+ SI+ V       ++I A V G IA+ +F  D
Sbjct: 99  TTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLD 151


>gi|45594310 olfactory receptor, family 5, subfamily V, member 1
          [Homo sapiens]
          Length = 321

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 48 GYSSLSVIEMILAAIFFVVYMCDLHTKIPFI 78
          G+S+L+ ++ +L  IFF+ Y C L   I  I
Sbjct: 16 GFSNLNELQFLLFTIFFLTYFCTLGGNILII 46


>gi|118026921 asparagine-linked glycosylation 9 protein isoform a
           [Homo sapiens]
          Length = 618

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 50  SSLSVIEMILAAIFFVVYMCDLHTKIPF----INWPWSDFFR-TLIAAILYLITSIVVLV 104
           +S++V+ +   AI    +   L   I F    +   W  FF  +L+A IL+L+   VV++
Sbjct: 212 TSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVP--VVVI 269

Query: 105 ERGNHSKIVAGVLGLIATCLF---GYDAYVTFP 134
           +   + K+V   L ++   +F   G D Y T P
Sbjct: 270 DSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEP 302


>gi|118026935 asparagine-linked glycosylation 9 protein isoform d
           [Homo sapiens]
          Length = 440

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 50  SSLSVIEMILAAIFFVVYMCDLHTKIPF----INWPWSDFFR-TLIAAILYLITSIVVLV 104
           +S++V+ +   AI    +   L   I F    +   W  FF  +L+A IL+L+   VV++
Sbjct: 41  TSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVP--VVVI 98

Query: 105 ERGNHSKIVAGVLGLIATCLF---GYDAYVTFP 134
           +   + K+V   L ++   +F   G D Y T P
Sbjct: 99  DSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEP 131


>gi|118026937 asparagine-linked glycosylation 9 protein isoform c
           [Homo sapiens]
          Length = 447

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 50  SSLSVIEMILAAIFFVVYMCDLHTKIPF----INWPWSDFFR-TLIAAILYLITSIVVLV 104
           +S++V+ +   AI    +   L   I F    +   W  FF  +L+A IL+L+   VV++
Sbjct: 41  TSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVP--VVVI 98

Query: 105 ERGNHSKIVAGVLGLIATCLF---GYDAYVTFP 134
           +   + K+V   L ++   +F   G D Y T P
Sbjct: 99  DSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEP 131


>gi|118026933 asparagine-linked glycosylation 9 protein isoform b
           [Homo sapiens]
          Length = 611

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 50  SSLSVIEMILAAIFFVVYMCDLHTKIPF----INWPWSDFFR-TLIAAILYLITSIVVLV 104
           +S++V+ +   AI    +   L   I F    +   W  FF  +L+A IL+L+   VV++
Sbjct: 212 TSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVP--VVVI 269

Query: 105 ERGNHSKIVAGVLGLIATCLF---GYDAYVTFP 134
           +   + K+V   L ++   +F   G D Y T P
Sbjct: 270 DSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEP 302


>gi|14589946 protocadherin 11 Y-linked isoform c [Homo sapiens]
          Length = 1340

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 829 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 860


>gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens]
          Length = 1048

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 829 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 860


>gi|14589942 protocadherin 11 Y-linked isoform a [Homo sapiens]
          Length = 1037

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 818 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 849


>gi|7657443 protocadherin 11 X-linked isoform a precursor [Homo
           sapiens]
          Length = 1021

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 797 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 828


>gi|14589922 protocadherin 11 X-linked isoform d [Homo sapiens]
          Length = 1337

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 797 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 828


>gi|14589920 protocadherin 11 X-linked isoform c [Homo sapiens]
          Length = 1347

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 797 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 828


>gi|14589918 protocadherin 11 X-linked isoform b precursor [Homo
           sapiens]
          Length = 1025

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 72  HTKIPFINWPWSDFFRTLIAAILYLITSIVVL 103
           +T+I  ++ P SD+ + L+AA+   IT +VV+
Sbjct: 797 NTEIADVSSPTSDYVKILVAAVAGTITVVVVI 828


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,666,314
Number of Sequences: 37866
Number of extensions: 198252
Number of successful extensions: 664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 32
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.