Guide to the Human Genome
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Name: CMTM4 Sequence: fasta or formatted (208aa) NCBI GI: 31657096
Description:

chemokine-like factor superfamily 4 isoform 2

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [234aa] chemokine-like factor superfamily 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         23           2
 C cysteine            2.4          5           1
 D aspartate           3.8          8           1
 E glutamate           5.3         11           2
 F phenylalanine       6.2         13           2
 G glycine             6.2         13           1
 H histidine           1.0          2           1
 I isoleucine          7.2         15           1
 K lysine              1.0          2           1
 L leucine            10.6         22           2
 M methionine          2.4          5           1
 N asparagine          3.4          7           1
 P proline             3.4          7           1
 Q glutamine           3.8          8           2
 R arginine            7.2         15           2
 S serine              8.7         18           2
 T threonine           5.8         12           2
 V valine              7.2         15           2
 W tryptophan          1.0          2           1
 Y tyrosine            2.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine-like factor superfamily 4 isoform 2 
CMTM4                 1.000   chemokine-like factor superfamily 4 isoform 1 
CMTM6                 0.182   CKLF-like MARVEL transmembrane domain containing 6 [H...
CMTM7                 0.107   CKLF-like MARVEL transmembrane domain containing 7 i...
CMTM8                 0.083   CKLF-like MARVEL transmembrane domain containing 8 [...
PLLP                  0.076   plasmolipin 
CMTM5                 0.076   chemokine-like factor superfamily 5 isoform a 
PLP2                  0.076   proteolipid protein 2 (colonic epithelium-enriched) [...
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM3                 0.060   chemokine-like factor superfamily 3 
MAL2                  0.052   MAL2 proteolipid protein 
MAL                   0.044   T-lymphocyte maturation-associated protein isoform a ...
CMTM7                 0.034   CKLF-like MARVEL transmembrane domain containing 7 i...
CMTM1                 0.026   chemokine-like factor superfamily 1 isoform 13 [Hom...
CMTM2                 0.018   chemokine-like factor superfamily 2 
MAL                   0.018   T-lymphocyte maturation-associated protein isoform c...
CMTM1                 0.018   chemokine-like factor superfamily 1 isoform 14 [Hom...
SREBF2                0.016   sterol regulatory element-binding transcription fact...
MARVELD2              0.016   MARVEL domain containing 2 isoform 1 
MARVELD2              0.016   MARVEL domain containing 2 isoform beta 
SYNGR1                0.016   synaptogyrin 1 isoform 1a 
CMTM1                 0.016   chemokine-like factor superfamily 1 isoform 1 
SYNGR1                0.013   synaptogyrin 1 isoform 1c 
SYNGR1                0.013   synaptogyrin 1 isoform 1b 
SCN8A                 0.013   sodium channel, voltage gated, type VIII, alpha [Homo...
TCTN1                 0.010   tectonic family member 1 isoform 1 
TCTN1                 0.010   tectonic family member 1 isoform 2 
TCTN1                 0.010   tectonic family member 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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