Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PLLP Sequence: fasta or formatted (182aa) NCBI GI: 7705755
Description:

plasmolipin

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         26           3
 C cysteine            1.1          2           1
 D aspartate           1.6          3           1
 E glutamate           1.1          2           1
 F phenylalanine       6.6         12           2
 G glycine             6.0         11           2
 H histidine           1.1          2           1
 I isoleucine          3.8          7           1
 K lysine              1.1          2           1
 L leucine            13.7         25           2
 M methionine          4.4          8           1
 N asparagine          2.2          4           1
 P proline             4.4          8           1
 Q glutamine           3.3          6           1
 R arginine            4.4          8           1
 S serine              8.2         15           2
 T threonine           4.9          9           1
 V valine              9.3         17           1
 W tryptophan          2.7          5           1
 Y tyrosine            5.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plasmolipin 
CMTM8                 0.303   CKLF-like MARVEL transmembrane domain containing 8 [...
MAL2                  0.113   MAL2 proteolipid protein 
MALL                  0.101   mal, T-cell differentiation protein-like 
MAL                   0.098   T-lymphocyte maturation-associated protein isoform a ...
LOC100287119          0.095   PREDICTED: hypothetical protein XP_002342305 
CMTM4                 0.086   chemokine-like factor superfamily 4 isoform 2 
CMTM4                 0.086   chemokine-like factor superfamily 4 isoform 1 
LOC100132330          0.080   PREDICTED: similar to mal, T-cell differentiation p...
LOC100132330          0.080   PREDICTED: similar to mal, T-cell differentiation p...
LOC100132330          0.080   PREDICTED: similar to mal, T-cell differentiation p...
MYADM                 0.080   myeloid-associated differentiation marker 
MYADM                 0.080   myeloid-associated differentiation marker 
MYADM                 0.080   myeloid-associated differentiation marker 
MYADM                 0.080   myeloid-associated differentiation marker 
MYADM                 0.080   myeloid-associated differentiation marker 
MAL                   0.068   T-lymphocyte maturation-associated protein isoform b...
CMTM7                 0.056   CKLF-like MARVEL transmembrane domain containing 7 i...
CMTM5                 0.053   chemokine-like factor superfamily 5 isoform a 
CMTM7                 0.045   CKLF-like MARVEL transmembrane domain containing 7 i...
MARVELD2              0.039   MARVEL domain containing 2 isoform 1 
MARVELD2              0.039   MARVEL domain containing 2 isoform beta 
GPR97                 0.030   G protein-coupled receptor 97 
PLP2                  0.030   proteolipid protein 2 (colonic epithelium-enriched) [...
MYADML2               0.027   myeloid-associated differentiation marker-like 2 [H...
GPR112                0.027   G-protein coupled receptor 112 
GPR64                 0.021   G protein-coupled receptor 64 isoform 3 
GPR64                 0.021   G protein-coupled receptor 64 isoform 2 
GPR64                 0.021   G protein-coupled receptor 64 isoform 1 
GPR64                 0.021   G protein-coupled receptor 64 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press