Search of human proteins with 4505715

Search of human proteins with 4505715

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo
sapiens]
         (326 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]   669   0.0  
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi...   657   0.0  
gi|5902054 ring finger protein 5 [Homo sapiens]                        52   5e-07
gi|87241872 ring finger protein 151 [Homo sapiens]                     52   5e-07
gi|109134327 PTD016 protein [Homo sapiens]                             51   1e-06
gi|7706039 ring finger protein 181 [Homo sapiens]                      49   5e-06
gi|21071001 autocrine motility factor receptor [Homo sapiens]          49   8e-06
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is...    49   8e-06
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is...    49   8e-06
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ...    48   1e-05
gi|54792146 tripartite motif-containing 47 [Homo sapiens]              48   1e-05
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ...    48   1e-05
gi|7706091 bifunctional apoptosis regulator [Homo sapiens]             48   1e-05
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [...    48   1e-05
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]          48   1e-05
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]           48   1e-05
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]        48   1e-05
gi|117938316 tripartite motif-containing 22 [Homo sapiens]             47   2e-05
gi|33636758 ring finger protein 146 [Homo sapiens]                     47   2e-05
gi|38679905 tripartite motif-containing 65 [Homo sapiens]              47   2e-05
gi|24025688 ligand of numb-protein X 2 [Homo sapiens]                  47   2e-05
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming...    47   3e-05
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming...    47   3e-05
gi|37595555 ring finger protein 125 [Homo sapiens]                     46   4e-05
gi|4508005 tripartite motif-containing 26 [Homo sapiens]               46   4e-05
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]         46   5e-05
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s...    45   7e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s...    45   7e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s...    45   7e-05
gi|117676384 splicing factor, arginine/serine-rich 2, interactin...    45   9e-05

>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
          Length = 326

 Score =  669 bits (1726), Expect = 0.0
 Identities = 326/326 (100%), Positives = 326/326 (100%)

Query: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60
           MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 61  TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120
           TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120

Query: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180
           PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
Sbjct: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180

Query: 181 WFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVISLLHLVLSMGLQLYGFR 240
           WFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVISLLHLVLSMGLQLYGFR
Sbjct: 181 WFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVISLLHLVLSMGLQLYGFR 240

Query: 241 QRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAW 300
           QRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAW
Sbjct: 241 QRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAW 300

Query: 301 CSSKAECPLCREKFPPQKLIYLRHYR 326
           CSSKAECPLCREKFPPQKLIYLRHYR
Sbjct: 301 CSSKAECPLCREKFPPQKLIYLRHYR 326


>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
           sapiens]
          Length = 346

 Score =  657 bits (1695), Expect = 0.0
 Identities = 326/346 (94%), Positives = 326/346 (94%), Gaps = 20/346 (5%)

Query: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60
           MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
Sbjct: 1   MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60

Query: 61  TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120
           TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
Sbjct: 61  TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120

Query: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180
           PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
Sbjct: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180

Query: 181 WFYIHGVFYHLAKRLTGITY--------------------LRVRSLPGEDLRARVSYRLL 220
           WFYIHGVFYHLAKRLTGITY                    LRVRSLPGEDLRARVSYRLL
Sbjct: 181 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL 240

Query: 221 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 280
           GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
Sbjct: 241 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 300

Query: 281 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 326
           RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
Sbjct: 301 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346


>gi|5902054 ring finger protein 5 [Homo sapiens]
          Length = 180

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSS---KAECPLCREKFPPQKLIYL 322
           C +CLE  R    + CGHL+CW C+  W  +   + ECP+C+     +K++ L
Sbjct: 27  CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 79


>gi|87241872 ring finger protein 151 [Homo sapiens]
          Length = 245

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 270 NPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 326
           N +C++C    + P   PC H+FC +CI  W + +  CP CR++   +K++++   R
Sbjct: 17  NFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73


>gi|109134327 PTD016 protein [Homo sapiens]
          Length = 435

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 222 VISLLHLVLSMGLQLYG----FRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCL 277
           +++LL+L+L + L+ +G    FRQ  R           S+  A+ + +    + +C++C 
Sbjct: 326 LLALLYLILKL-LEFFGHLRTFRQVLRI-----FFTQPSYGVAASKRQCSDVDDICSICQ 379

Query: 278 EERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
            E + P    C H+FC EC+T W + +  CPLCR
Sbjct: 380 AEFQKPILLICQHIFCEECMTLWFNREKTCPLCR 413


>gi|7706039 ring finger protein 181 [Homo sapiens]
          Length = 153

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 23/56 (41%), Positives = 25/56 (44%)

Query: 271 PLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 326
           P+C L  EE       PC HLF   CI  W S    CPLCR + P     Y  H R
Sbjct: 77  PVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRR 132


>gi|21071001 autocrine motility factor receptor [Homo sapiens]
          Length = 643

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 210 DLRARVSYRLLGVI--SLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASL----- 262
           DL   +   L G I  S+  LV+ M L+      ++R R+     R + +  A       
Sbjct: 272 DLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATP 331

Query: 263 EERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
           EE AV+ N  C +C +  +     PCGHLF   C+ +W      CP CR
Sbjct: 332 EELAVN-NDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCR 379


>gi|73747840 LON peptidase N-terminal domain and ring finger 3
           isoform 1 [Homo sapiens]
          Length = 759

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCRE 312
           C LC+     P  TPCGH FC +C+       A+CPLC++
Sbjct: 467 CALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKD 506



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 313
           C  C      P +  CGH FC  C+    ++   C LC  K
Sbjct: 158 CRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVK 198


>gi|37622896 LON peptidase N-terminal domain and ring finger 3
           isoform 2 [Homo sapiens]
          Length = 718

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCRE 312
           C LC+     P  TPCGH FC +C+       A+CPLC++
Sbjct: 426 CALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKD 465



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 313
           C  C      P +  CGH FC  C+    ++   C LC  K
Sbjct: 158 CRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVK 198


>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence b [Homo sapiens]
          Length = 982

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 272 LCTLCLEERRHPTATPCGHLFCWECITAWCSSKAE-CPLCR 311
           LC +C E  +     PCGHL C  C+TAW  S  + CP CR
Sbjct: 372 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 412


>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
          Length = 638

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 11/54 (20%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITA-W----------CSSKAECPLCREKFP 315
           C +CLE  R P   PCGH FC  C+ A W              A CPLC+E FP
Sbjct: 9   CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEPFP 62


>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence [Homo sapiens]
          Length = 906

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 272 LCTLCLEERRHPTATPCGHLFCWECITAWCSSKAE-CPLCR 311
           LC +C E  +     PCGHL C  C+T+W  S+ + CP CR
Sbjct: 380 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 420


>gi|7706091 bifunctional apoptosis regulator [Homo sapiens]
          Length = 450

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAW--CSSKAECPLCREKFP--PQKLIYLR 323
           C  C +   +PT   CGH FC  C+  W   S K ECP CREK+   P+  I LR
Sbjct: 34  CHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEGFPKVSILLR 88


>gi|148528975 LON peptidase N-terminal domain and ring finger 2
           [Homo sapiens]
          Length = 754

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 313
           C LC+     P  TPCGH FC +C+         CPLC++K
Sbjct: 449 CALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDK 489


>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
          Length = 192

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE---CPLCREKFPPQKLIYL 322
           C +CL+  +    + CGHLFCW C+  W  ++     CP+C+      K+I L
Sbjct: 39  CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 91


>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
          Length = 192

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE---CPLCREKFPPQKLIYL 322
           C +CL+  +    + CGHLFCW C+  W  ++     CP+C+      K+I L
Sbjct: 39  CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 91


>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
          Length = 444

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 264 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
           ++      +C +C  E R P    C H+FC EC+  W   +  CPLCR
Sbjct: 375 QQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCR 422


>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
          Length = 498

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 267 VSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCS-------SKAECPLCREKFPPQKL 319
           + +   C +CLE    P +  CGH FC  CITA           ++ CP+C+ +F P  L
Sbjct: 9   IEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNL 68

Query: 320 IYLRH 324
              RH
Sbjct: 69  RPNRH 73


>gi|33636758 ring finger protein 146 [Homo sapiens]
          Length = 358

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 271 PLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFP 315
           P C +CL+   HP + PC H+FC+ C+         C LCR++ P
Sbjct: 34  PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 78


>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
          Length = 517

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE-CPLCREKFP 315
           C +CL   + P   PCGH FC  CI  W     + CP CRE FP
Sbjct: 12  CAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFP 55


>gi|24025688 ligand of numb-protein X 2 [Homo sapiens]
          Length = 690

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 264 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 313
           +  V  + +C +CL+    P  TPCGH FC++C+  +   K  CPL R++
Sbjct: 41  QNEVDDDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDFCPLDRKR 90


>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence c isoform 2 [Homo sapiens]
          Length = 428

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 244 RARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSS 303
           +A  + R+H  +S  +  L     S   LC +C E  +     PCGHL C  C+ AW  S
Sbjct: 278 QAEPQQRIH--VSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS 335

Query: 304 KAE-CPLCR 311
            ++ CP CR
Sbjct: 336 DSQTCPFCR 344


>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence c isoform 1 [Homo sapiens]
          Length = 474

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 244 RARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSS 303
           +A  + R+H  +S  +  L     S   LC +C E  +     PCGHL C  C+ AW  S
Sbjct: 324 QAEPQQRIH--VSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS 381

Query: 304 KAE-CPLCR 311
            ++ CP CR
Sbjct: 382 DSQTCPFCR 390


>gi|37595555 ring finger protein 125 [Homo sapiens]
          Length = 232

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECI-TAWCSSKAECPLCREKFPPQ 317
           C +CLE    P  T CGH+FC  CI T+  ++K  CP CR   P +
Sbjct: 37  CAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSE 82


>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
          Length = 539

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 265 RAVSRNPLCTLCLEERRHPTATPCGHLFCWECIT---AWCSSKAECPLCREKFPPQKL 319
           R++     C++CL+  R P    CGH+FC  C T       S+  CPLC++ F  + +
Sbjct: 8   RSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENI 65


>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
          Length = 1066

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPL-CREKFPPQKL 319
           C LC +    P  TPCGH+FC  C+  W   +  CP  CR +   ++L
Sbjct: 18  CALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKEL 65


>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
           sapiens]
          Length = 493

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 267 VSRNPLCTLCLEERRHPTATPCGHLFCWECITA------WCSSKAECPLCREKFPPQKLI 320
           V     C +CLE    P +  CGH FC  C+TA          ++ CP+CR  + P+ + 
Sbjct: 9   VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68

Query: 321 YLRH 324
             RH
Sbjct: 69  PNRH 72


>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
           sapiens]
          Length = 326

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 267 VSRNPLCTLCLEERRHPTATPCGHLFCWECITA------WCSSKAECPLCREKFPPQKLI 320
           V     C +CLE    P +  CGH FC  C+TA          ++ CP+CR  + P+ + 
Sbjct: 9   VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68

Query: 321 YLRH 324
             RH
Sbjct: 69  PNRH 72


>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
           sapiens]
          Length = 347

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 267 VSRNPLCTLCLEERRHPTATPCGHLFCWECITA------WCSSKAECPLCREKFPPQKLI 320
           V     C +CLE    P +  CGH FC  C+TA          ++ CP+CR  + P+ + 
Sbjct: 9   VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68

Query: 321 YLRH 324
             RH
Sbjct: 69  PNRH 72


>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
           protein [Homo sapiens]
          Length = 1463

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 269 RNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKF 314
           R P+C  CL E+       C H+FC  CI  W  + A CP+ R+ F
Sbjct: 40  RCPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLASCPIDRKPF 85


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,846,852
Number of Sequences: 37866
Number of extensions: 631761
Number of successful extensions: 2836
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 2493
Number of HSP's gapped (non-prelim): 416
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.