Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BFAR Sequence: fasta or formatted (450aa) NCBI GI: 7706091
Description:

bifunctional apoptosis regulator

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         23           2
 C cysteine            2.4         11           2
 D aspartate           3.6         16           1
 E glutamate           7.8         35           3
 F phenylalanine       5.8         26           2
 G glycine             3.6         16           3
 H histidine           2.2         10           1
 I isoleucine          4.7         21           2
 K lysine              4.9         22           2
 L leucine            14.0         63           3
 M methionine          1.6          7           1
 N asparagine          3.6         16           2
 P proline             5.1         23           2
 Q glutamine           4.0         18           2
 R arginine            5.3         24           2
 S serine              7.3         33           2
 T threonine           4.9         22           2
 V valine              6.4         29           2
 W tryptophan          4.2         19           2
 Y tyrosine            3.6         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bifunctional apoptosis regulator 
LOC653192             0.035   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM43                0.035   tripartite motif-containing 43 
RNF135                0.033   ring finger protein 135 isoform 2 
RNF135                0.033   ring finger protein 135 isoform 1 
TRIM77                0.033   PREDICTED: tripartite motif-containing 77 
TRIM77                0.033   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.033   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.033   tripartite motif-containing 77 
TRIM60                0.031   ring finger protein 129 
RNF8                  0.030   ring finger protein 8 isoform 1 
TRIM65                0.030   tripartite motif-containing 65 
RNF125                0.030   ring finger protein 125 
TRIM35                0.029   tripartite motif-containing 35 isoform 2 
LOC100292251          0.029   PREDICTED: similar to Tripartite motif-containing p...
LOC100290015          0.029   PREDICTED: hypothetical protein XP_002348292 
LOC642446             0.027   PREDICTED: tripartite motif-containing protein 64B-...
LONRF1                0.027   LON peptidase N-terminal domain and ring finger 1 [H...
TRIM64                0.027   tripartite motif-containing 64 
TRIM39                0.027   tripartite motif-containing 39 isoform 2 
TRIM39                0.027   tripartite motif-containing 39 isoform 1 
LONRF2                0.027   LON peptidase N-terminal domain and ring finger 2 [...
TRIM11                0.026   tripartite motif-containing 11 
SPRYD5                0.026   SPRY domain containing 5 
LOC283116             0.026   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.026   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.026   PREDICTED: similar to ring finger protein 18 
LOC283116             0.026   PREDICTED: similar to ring finger protein 18 
TRIM48                0.026   tripartite motif-containing 48 
TRIM75                0.026   tripartite motif-containing 75 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press