Guide to the Human Genome
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Name: RNF146 Sequence: fasta or formatted (358aa) NCBI GI: 33636758
Description:

ring finger protein 146

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         29           2
 C cysteine            3.4         12           1
 D aspartate           7.0         25           1
 E glutamate           7.5         27           2
 F phenylalanine       1.4          5           1
 G glycine             7.0         25           3
 H histidine           2.2          8           1
 I isoleucine          2.8         10           2
 K lysine              3.6         13           2
 L leucine             7.5         27           2
 M methionine          1.1          4           1
 N asparagine          3.9         14           1
 P proline             5.3         19           1
 Q glutamine           3.6         13           2
 R arginine            7.3         26           3
 S serine             12.0         43           2
 T threonine           5.9         21           1
 V valine              7.3         26           2
 W tryptophan          1.1          4           2
 Y tyrosine            2.0          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 146 
PEX10                 0.031   peroxisome biogenesis factor 10 isoform 1 
PEX10                 0.031   peroxisome biogenesis factor 10 isoform 2 
HLTF                  0.031   helicase-like transcription factor 
HLTF                  0.031   helicase-like transcription factor 
RNF213                0.030   ring finger protein 213 
LONRF2                0.029   LON peptidase N-terminal domain and ring finger 2 [...
TRIM65                0.029   tripartite motif-containing 65 
TRIM47                0.029   tripartite motif-containing 47 
BRCA1                 0.027   breast cancer 1, early onset isoform 2 
BRCA1                 0.027   breast cancer 1, early onset isoform 5 
BRCA1                 0.027   breast cancer 1, early onset isoform 4 
BRCA1                 0.027   breast cancer 1, early onset isoform 1 
RNF168                0.026   ring finger protein 168 
TRIM8                 0.026   tripartite motif-containing 8 
LONRF3                0.026   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.026   LON peptidase N-terminal domain and ring finger 3 is...
TRIM15                0.024   tripartite motif protein 15 
LONRF1                0.024   LON peptidase N-terminal domain and ring finger 1 [H...
RNF151                0.023   ring finger protein 151 
RNF170                0.023   ring finger protein 170 isoform c 
RNF170                0.023   ring finger protein 170 isoform a 
RNF170                0.023   ring finger protein 170 isoform a 
LNX2                  0.023   ligand of numb-protein X 2 
RNF170                0.021   ring finger protein 170 isoform b 
DSPP                  0.021   dentin sialophosphoprotein preproprotein 
TRIM21                0.021   tripartite motif protein 21 
TRIM2                 0.021   tripartite motif-containing 2 isoform 2 
TRIM2                 0.021   tripartite motif-containing 2 isoform 1 
RNF125                0.021   ring finger protein 125 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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