Guide to the Human Genome
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Name: AMFR Sequence: fasta or formatted (643aa) NCBI GI: 21071001
Description:

autocrine motility factor receptor

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         48           4
 C cysteine            2.2         14           2
 D aspartate           4.2         27           2
 E glutamate           7.0         45           2
 F phenylalanine       5.0         32           2
 G glycine             4.5         29           2
 H histidine           3.4         22           2
 I isoleucine          3.7         24           2
 K lysine              2.0         13           1
 L leucine            12.6         81           2
 M methionine          3.3         21           1
 N asparagine          3.6         23           2
 P proline             5.1         33           2
 Q glutamine           5.0         32           2
 R arginine            7.2         46           3
 S serine              7.9         51           2
 T threonine           5.0         32           2
 V valine              7.2         46           2
 W tryptophan          1.7         11           1
 Y tyrosine            2.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   autocrine motility factor receptor 
SYVN1                 0.077   synoviolin 1 isoform b 
SYVN1                 0.077   synoviolin 1 isoform a 
RNF145                0.042   ring finger protein 145 
RNF126                0.026   ring finger protein 126 
RNF139                0.025   ring finger protein 139 
RNF115                0.024   Rabring 7 
RNF148                0.024   ring finger protein 148 
RNF150                0.024   ring finger protein 150 
RNF149                0.023   ring finger protein 149 
RNF130                0.023   ring finger protein 130 
DZIP3                 0.022   DAZ interacting protein 3, zinc finger 
RNF181                0.021   ring finger protein 181 
RNF128                0.020   ring finger protein 128 isoform 1 
RNF128                0.020   ring finger protein 128 isoform 2 
RNF133                0.020   ring finger protein 133 
RNF122                0.019   ring finger protein 122 
PEX10                 0.019   peroxisome biogenesis factor 10 isoform 1 
PEX10                 0.019   peroxisome biogenesis factor 10 isoform 2 
RNFT1                 0.018   PTD016 protein 
RNF165                0.017   ring finger protein 165 
RLIM                  0.017   ring finger protein, LIM domain interacting 
RLIM                  0.017   ring finger protein, LIM domain interacting 
RNF38                 0.017   ring finger protein 38 isoform 2 
RNF38                 0.017   ring finger protein 38 isoform 2 
RNF38                 0.017   ring finger protein 38 isoform 3 
RNF38                 0.017   ring finger protein 38 isoform 2 
RNF38                 0.017   ring finger protein 38 isoform 1 
TTC3                  0.017   tetratricopeptide repeat domain 3 
TTC3                  0.017   tetratricopeptide repeat domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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