Guide to the Human Genome
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Name: RNF185 Sequence: fasta or formatted (192aa) NCBI GI: 31542783
Description:

ring finger protein 185 isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt mRNA [192aa] ring finger protein 185 isoform 1
alt prot [136aa] ring finger protein 185 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         14           1
 C cysteine            3.6          7           1
 D aspartate           4.2          8           1
 E glutamate           4.2          8           1
 F phenylalanine       7.8         15           1
 G glycine            13.5         26           2
 H histidine           1.0          2           1
 I isoleucine          4.7          9           1
 K lysine              2.6          5           1
 L leucine             6.2         12           2
 M methionine          1.6          3           1
 N asparagine          3.6          7           1
 P proline             9.9         19           3
 Q glutamine           5.7         11           2
 R arginine            5.2         10           1
 S serine              8.3         16           2
 T threonine           3.6          7           1
 V valine              4.2          8           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 185 isoform 1 
RNF185                1.000   ring finger protein 185 isoform 1 
RNF5                  0.531   ring finger protein 5 
RNF185                0.458   ring finger protein 185 isoform 2 
CBLC                  0.078   Cas-Br-M (murine) ecotropic retroviral transforming...
CBLC                  0.078   Cas-Br-M (murine) ecotropic retroviral transforming...
HLTF                  0.068   helicase-like transcription factor 
HLTF                  0.068   helicase-like transcription factor 
TRIM26                0.065   tripartite motif-containing 26 
RFWD2                 0.062   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.062   ring finger and WD repeat domain 2 isoform d24 [Homo...
CBL                   0.060   Cas-Br-M (murine) ecotropic retroviral transforming ...
PEX10                 0.060   peroxisome biogenesis factor 10 isoform 1 
PEX10                 0.060   peroxisome biogenesis factor 10 isoform 2 
TRIM39                0.057   tripartite motif-containing 39 isoform 2 
TRIM39                0.057   tripartite motif-containing 39 isoform 1 
CBLB                  0.057   Cas-Br-M (murine) ecotropic retroviral transforming ...
RNF151                0.055   ring finger protein 151 
MEX3B                 0.052   mex-3 homolog B 
RNF114                0.052   zinc finger protein 313 
BRCA1                 0.052   breast cancer 1, early onset isoform 2 
BRCA1                 0.052   breast cancer 1, early onset isoform 5 
BRCA1                 0.052   breast cancer 1, early onset isoform 4 
BRCA1                 0.052   breast cancer 1, early onset isoform 1 
TRAIP                 0.052   TRAF interacting protein 
TRIM25                0.049   tripartite motif-containing 25 
TRIM77                0.049   PREDICTED: tripartite motif-containing 77 
TRIM77                0.049   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.049   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.049   tripartite motif-containing 77 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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